BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1855.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777870.1| D-xylose ABC transporter permease [Herbaspir... 523 e-146 ref|YP_004753800.1| Xylose ABC transporter permease xylH [Collim... 498 e-139 gb|ACN58870.1| xylose ABC transporter [uncultured bacterium BLR13] 452 e-125 ref|YP_002871906.1| xylose ABC transporter permease [Pseudomonas... 449 e-124 ref|YP_348032.1| inner-membrane translocator [Pseudomonas fluore... 441 e-121 >ref|YP_003777870.1| D-xylose ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65962.1| ABC-type D-xylose transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 368/377 (97%), Positives = 373/377 (98%) Query: 20 MANLKLVFRRYKIIALLIAIAIIWGFFSFMTDGGFLTPRNLSNLLRQMSVTGILACGMVL 79 MA+LK VFRRYKIIALLIAIAIIWGFFSFMTDGGF+TPRNLSNLLRQMSVTGILACGMVL Sbjct: 9 MADLKQVFRRYKIIALLIAIAIIWGFFSFMTDGGFVTPRNLSNLLRQMSVTGILACGMVL 68 Query: 80 VIIAGEIDLSVGSLLGLLGGIAALLDVSHHLPLALNLVLALGFGLGLGLLNGYLTAYLGI 139 VIIAGEIDLSVGSLLGLLGG+AALLDVSHHLPLALNLVLALGFGL LGLLNGYLTAYLGI Sbjct: 69 VIIAGEIDLSVGSLLGLLGGLAALLDVSHHLPLALNLVLALGFGLALGLLNGYLTAYLGI 128 Query: 140 PSFIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQIGVALGIALFVLAVAL 199 PSFIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQ+GVALGIALFVLAVAL Sbjct: 129 PSFIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQMGVALGIALFVLAVAL 188 Query: 200 TWMSRVNRSRHGLPLAALWRDGLKVLVIGAVLLAFVRTLNSYDGIPVPVLLLLGLLGLFS 259 TWMSRVNRSRHGLPLAALWRD LKV+VIGAVLLAFVRTLNSYDGIPVPVLLLL LLGLFS Sbjct: 189 TWMSRVNRSRHGLPLAALWRDALKVVVIGAVLLAFVRTLNSYDGIPVPVLLLLALLGLFS 248 Query: 260 YVSTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSP 319 YVSTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSP Sbjct: 249 YVSTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSP 308 Query: 320 SAGNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKG 379 SAGNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKG Sbjct: 309 SAGNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKG 368 Query: 380 SILVLAVWVDVSTRSGR 396 SILVLAVWVDVSTRSGR Sbjct: 369 SILVLAVWVDVSTRSGR 385 >ref|YP_004753800.1| Xylose ABC transporter permease xylH [Collimonas fungivorans Ter331] gb|AEK62977.1| Xylose ABC transporter, permease protein xylH [Collimonas fungivorans Ter331] Length = 379 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 315/375 (84%), Positives = 347/375 (92%) Query: 22 NLKLVFRRYKIIALLIAIAIIWGFFSFMTDGGFLTPRNLSNLLRQMSVTGILACGMVLVI 81 N+K +FR+YKI+ALLIAIAIIW FFS+ T+GGF+TPRNLSNLLRQMS+TGILACGMVLVI Sbjct: 5 NIKQLFRQYKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMSITGILACGMVLVI 64 Query: 82 IAGEIDLSVGSLLGLLGGIAALLDVSHHLPLALNLVLALGFGLGLGLLNGYLTAYLGIPS 141 I GEIDLSVGS+LGLLGG+AA+L+V+HHLPL LNL L L GL LGL NGYLTAY+ IPS Sbjct: 65 IGGEIDLSVGSMLGLLGGVAAVLNVTHHLPLPLNLCLVLLLGLALGLFNGYLTAYMRIPS 124 Query: 142 FIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQIGVALGIALFVLAVALTW 201 FIVGLGGMLAFRGILLG+TGGLTIAPVS ++VYLGQGYL PQ+G+ LG+ LF+L +ALTW Sbjct: 125 FIVGLGGMLAFRGILLGVTGGLTIAPVSSDLVYLGQGYLTPQLGIVLGVGLFILTLALTW 184 Query: 202 MSRVNRSRHGLPLAALWRDGLKVLVIGAVLLAFVRTLNSYDGIPVPVLLLLGLLGLFSYV 261 R NR +H LP+ LWRDG++VL+IG VLLAFV TLN+YDGIPVPVLLLL LLGLFSYV Sbjct: 185 RQRRNRMQHALPVPPLWRDGVRVLLIGLVLLAFVSTLNTYDGIPVPVLLLLALLGLFSYV 244 Query: 262 STQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSPSA 321 +TQTVFGRRIYSVGSNMEATRLSGVNVQAVKLW+FGIMGVMCALAGLVNTARLAAGSPSA Sbjct: 245 TTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWIFGIMGVMCALAGLVNTARLAAGSPSA 304 Query: 322 GNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKGSI 381 GNMGELDAIAACFIGGTSMRGGSGT+YGALIGALVMASLDNGMSMLDV TYWQMIVKGSI Sbjct: 305 GNMGELDAIAACFIGGTSMRGGSGTVYGALIGALVMASLDNGMSMLDVDTYWQMIVKGSI 364 Query: 382 LVLAVWVDVSTRSGR 396 L+LAVWVDVSTRSGR Sbjct: 365 LMLAVWVDVSTRSGR 379 >gb|ACN58870.1| xylose ABC transporter [uncultured bacterium BLR13] Length = 380 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 292/375 (77%), Positives = 342/375 (91%) Query: 22 NLKLVFRRYKIIALLIAIAIIWGFFSFMTDGGFLTPRNLSNLLRQMSVTGILACGMVLVI 81 N+K +F +YK++ALLIA+A+IWGFFS+ T+GGF+TPRNLSNL+RQM++TGI+ACGM LVI Sbjct: 5 NIKQLFTQYKMLALLIAVALIWGFFSYHTEGGFITPRNLSNLMRQMAITGIVACGMSLVI 64 Query: 82 IAGEIDLSVGSLLGLLGGIAALLDVSHHLPLALNLVLALGFGLGLGLLNGYLTAYLGIPS 141 IAGEIDLSVGSLLGLLGG+AA+LDV+HHLPL LNL++ LG GL +GL NGYLTAYL IPS Sbjct: 65 IAGEIDLSVGSLLGLLGGVAAVLDVTHHLPLPLNLLIVLGIGLVIGLFNGYLTAYLKIPS 124 Query: 142 FIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQIGVALGIALFVLAVALTW 201 FIVGLGGMLA+RGI+LG+TGG+TIAPVSD++VYLGQ YL P +GVALG+ LF +AV L W Sbjct: 125 FIVGLGGMLAYRGIVLGVTGGVTIAPVSDDLVYLGQAYLSPTLGVALGVVLFAVAVYLVW 184 Query: 202 MSRVNRSRHGLPLAALWRDGLKVLVIGAVLLAFVRTLNSYDGIPVPVLLLLGLLGLFSYV 261 R + + +GL +A +WRDG KV+V+GAVLLAFV T NSY+GIP+PVLLLL LLG+FSYV Sbjct: 185 QQRRSHAAYGLAVAPVWRDGAKVVVLGAVLLAFVTTFNSYEGIPLPVLLLLALLGIFSYV 244 Query: 262 STQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSPSA 321 +TQTVFGRR+Y+VGSNMEATRLSG+NVQAVKLW+FGIMG+MCALAGLVNTARLAAGSPSA Sbjct: 245 TTQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGLMCALAGLVNTARLAAGSPSA 304 Query: 322 GNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKGSI 381 G GELDAIAACFIGGTSMRGGSGT++GALIGALVMASLDNGMSMLDV TYWQMIVKG I Sbjct: 305 GTSGELDAIAACFIGGTSMRGGSGTVHGALIGALVMASLDNGMSMLDVDTYWQMIVKGCI 364 Query: 382 LVLAVWVDVSTRSGR 396 L LAVWVDV+TR+G+ Sbjct: 365 LTLAVWVDVATRAGK 379 >ref|YP_002871906.1| xylose ABC transporter permease [Pseudomonas fluorescens SBW25] emb|CAY48533.1| xylose ABC transport system, permease protein [Pseudomonas fluorescens SBW25] Length = 378 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 296/377 (78%), Positives = 335/377 (88%) Query: 20 MANLKLVFRRYKIIALLIAIAIIWGFFSFMTDGGFLTPRNLSNLLRQMSVTGILACGMVL 79 M LK +F RYK++AL+IA+A+IW FFS+ T+GGFLTPRNLSNLLRQMS+TGILACGMVL Sbjct: 1 MNQLKQLFTRYKMLALVIAVAVIWLFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVL 60 Query: 80 VIIAGEIDLSVGSLLGLLGGIAALLDVSHHLPLALNLVLALGFGLGLGLLNGYLTAYLGI 139 VII+GEIDLSVGSLLGLLGG+AA+LDV +H+PL NL L GL +GL NGY+TAYL I Sbjct: 61 VIISGEIDLSVGSLLGLLGGLAAILDVVYHIPLLANLSLVALCGLMIGLANGYMTAYLRI 120 Query: 140 PSFIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQIGVALGIALFVLAVAL 199 PSFIVGLGGMLAFRGILLGITGG TIAPVS ++VY+GQGYLP +G+ LG+ LF L + L Sbjct: 121 PSFIVGLGGMLAFRGILLGITGGTTIAPVSPSLVYVGQGYLPHSVGIGLGVLLFALTLFL 180 Query: 200 TWMSRVNRSRHGLPLAALWRDGLKVLVIGAVLLAFVRTLNSYDGIPVPVLLLLGLLGLFS 259 TW R NR+ HGL + RDG++V VIGAVL FV TLNSYDGIPVPVLLLL LLG+FS Sbjct: 181 TWKQRRNRALHGLAAHSRVRDGVRVAVIGAVLAGFVTTLNSYDGIPVPVLLLLVLLGVFS 240 Query: 260 YVSTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSP 319 YV++QTVFGRR+Y+VGSNMEATRLSG+NVQAVKLW+FGIMGVMCALAGLVNTARLAAGSP Sbjct: 241 YVTSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCALAGLVNTARLAAGSP 300 Query: 320 SAGNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKG 379 SAGNMGELDAIAACFIGGTSMRGGSGT+YGAL+GALV+ SLDNGMSMLDV +YWQMIVKG Sbjct: 301 SAGNMGELDAIAACFIGGTSMRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKG 360 Query: 380 SILVLAVWVDVSTRSGR 396 SILVLAVWVDVSTR+GR Sbjct: 361 SILVLAVWVDVSTRTGR 377 >ref|YP_348032.1| inner-membrane translocator [Pseudomonas fluorescens Pf0-1] gb|ABA74043.1| xylose ABC transporter membrane protein [Pseudomonas fluorescens Pf0-1] Length = 378 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 292/377 (77%), Positives = 332/377 (88%) Query: 20 MANLKLVFRRYKIIALLIAIAIIWGFFSFMTDGGFLTPRNLSNLLRQMSVTGILACGMVL 79 M +K +F RYK++AL+ A+A+IW FFS+ T+GGFLTPRNLSNLLRQMS+TGILACGMVL Sbjct: 1 MNQVKQLFTRYKMLALVFAVALIWLFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVL 60 Query: 80 VIIAGEIDLSVGSLLGLLGGIAALLDVSHHLPLALNLVLALGFGLGLGLLNGYLTAYLGI 139 VII+GEIDLSVGSLLGLLGG+AA+LDV +H+PL NL L + GL +GL NGY+ AYL I Sbjct: 61 VIISGEIDLSVGSLLGLLGGVAAILDVVYHIPLLANLSLVVVCGLLIGLANGYMAAYLRI 120 Query: 140 PSFIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQIGVALGIALFVLAVAL 199 PSFIVGLGGMLAFRGILLGITGG TIAPVS +VY+GQGYLP +G LG+ LF L + L Sbjct: 121 PSFIVGLGGMLAFRGILLGITGGTTIAPVSPELVYIGQGYLPHTVGAGLGVLLFALTLFL 180 Query: 200 TWMSRVNRSRHGLPLAALWRDGLKVLVIGAVLLAFVRTLNSYDGIPVPVLLLLGLLGLFS 259 TW R NR+ HGL +L RD +VL+IGAVL FV+TLNSYDGIPVPVLLLL LLG FS Sbjct: 181 TWKQRRNRALHGLAAHSLARDVARVLLIGAVLAGFVQTLNSYDGIPVPVLLLLILLGGFS 240 Query: 260 YVSTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSP 319 YV++QTVFGRR+YSVGSNMEATRLSG+NVQAVKLW+FGIMGVMCALAG+VNTARLAAGSP Sbjct: 241 YVTSQTVFGRRVYSVGSNMEATRLSGINVQAVKLWIFGIMGVMCALAGVVNTARLAAGSP 300 Query: 320 SAGNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKG 379 SAG+MGELDAIAACFIGGTSMRGGSGT+YGAL+GALV+ SLDNGMSMLDV +YWQMIVKG Sbjct: 301 SAGSMGELDAIAACFIGGTSMRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKG 360 Query: 380 SILVLAVWVDVSTRSGR 396 SILVLAVWVDVSTR+GR Sbjct: 361 SILVLAVWVDVSTRTGR 377