BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1854.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777871.1| short-chain dehydrogenase [Herbaspirillum se... 514 e-144 gb|ACN58875.1| D-xylose 1-dehydrogenase [uncultured bacterium BL... 336 2e-90 ref|YP_556561.1| D-xylose dehydrogenase [Burkholderia xenovorans... 324 9e-87 ref|YP_003544733.1| SDR-family protein [Sphingobium japonicum UT... 315 4e-84 ref|ZP_08870521.1| short-chain dehydrogenase/reductase SDR [Azos... 314 9e-84 >ref|YP_003777871.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65963.1| short-chain dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 252/263 (95%), Positives = 255/263 (96%) Query: 1 MTAATPTVFEHALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIATEPSEALV 60 MTAAT FEHALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIA EPS+ALV Sbjct: 1 MTAATTPAFEHALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIAAEPSQALV 60 Query: 61 ASLKDAAVAPRFFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHKSEDVTPAYW 120 ASLKDA +APRFFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHK+ DVTPAYW Sbjct: 61 ASLKDAPIAPRFFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHKTADVTPAYW 120 Query: 121 DERLAVNLRHQFFCAQAVLPGMRERKGGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTH 180 DERLAVNLRHQFFCAQAVLPGMRERK GVILNFGSISWHLGLPDLTLYMTAKAGIEGMTH Sbjct: 121 DERLAVNLRHQFFCAQAVLPGMRERKQGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTH 180 Query: 181 GMARDFGRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPVRVDPHDVAALALF 240 GMARDFGRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLP RVDPHDVAALALF Sbjct: 181 GMARDFGRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPTRVDPHDVAALALF 240 Query: 241 LSSDSGAKCTGREYYVDAGWLGA 263 LSSDSGAKCTGREYYVDAGWLGA Sbjct: 241 LSSDSGAKCTGREYYVDAGWLGA 263 >gb|ACN58875.1| D-xylose 1-dehydrogenase [uncultured bacterium BLR13] Length = 288 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 175/262 (66%), Positives = 207/262 (79%), Gaps = 2/262 (0%) Query: 2 TAATPTVFEHALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIATEPSEALVA 61 T A P + A Y SLA KRV+ITGGG+GIGAA+V+AFV QGA+V F+DIA E S+ LVA Sbjct: 29 TMAQPMAY--ATYPSLADKRVLITGGGTGIGAAIVDAFVKQGARVYFIDIAEEASKELVA 86 Query: 62 SLKDAAVAPRFFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHKSEDVTPAYWD 121 SL+ A PRFFPC+L +LEAL F +IE G ++++INNAAND+RH EDVTP YWD Sbjct: 87 SLQGAKYPPRFFPCDLTDLEALATVFAQIEREHGALEVMINNAANDNRHNIEDVTPKYWD 146 Query: 122 ERLAVNLRHQFFCAQAVLPGMRERKGGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHG 181 + LAVNLRHQFFCAQAV PGM+ GVILNFGSISWHL L +LTLYMTAKA IEGMT G Sbjct: 147 DSLAVNLRHQFFCAQAVAPGMKAAGTGVILNFGSISWHLALGNLTLYMTAKAAIEGMTRG 206 Query: 182 MARDFGRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPVRVDPHDVAALALFL 241 +ARD G DG+RVN IIPG++RTPRQ LWHTPE E IL AQCL RV+P DVAA+ALFL Sbjct: 207 LARDLGADGIRVNCIIPGSVRTPRQMALWHTPEGEQDILNAQCLHERVEPEDVAAMALFL 266 Query: 242 SSDSGAKCTGREYYVDAGWLGA 263 +SD+ +C+GR+Y+VDAGW GA Sbjct: 267 ASDNAGRCSGRDYFVDAGWYGA 288 >ref|YP_556561.1| D-xylose dehydrogenase [Burkholderia xenovorans LB400] gb|ABE37211.1| D-xylose dehydrogenase [Burkholderia xenovorans LB400] Length = 268 Score = 324 bits (830), Expect = 9e-87, Method: Composition-based stats. Identities = 153/252 (60%), Positives = 198/252 (78%) Query: 11 HALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIATEPSEALVASLKDAAVAP 70 +A+Y SL+GK VVITGGGSGIGAA+VEAF QGA+V FLD+A + S AL SL DA P Sbjct: 16 YAIYPSLSGKTVVITGGGSGIGAAMVEAFARQGARVFFLDVAEDDSLALQQSLSDAPHPP 75 Query: 71 RFFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHKSEDVTPAYWDERLAVNLRH 130 F C+L +++A+ + F I + G +++L+NNA NDDRH+ + +TPAYWDER+AVNLRH Sbjct: 76 LFRRCDLRSVDAIHSAFAGIVEIAGPIEVLVNNAGNDDRHEVDAITPAYWDERMAVNLRH 135 Query: 131 QFFCAQAVLPGMRERKGGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDFGRDG 190 QFFCAQA GMR+ GVILN GS+SWHL LP+L +YM+AKAGIEG+T G+ARD G G Sbjct: 136 QFFCAQAAAAGMRKIGRGVILNLGSVSWHLALPNLAIYMSAKAGIEGLTRGLARDLGAAG 195 Query: 191 VRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPVRVDPHDVAALALFLSSDSGAKCT 250 +RVN IIPGA+RTPRQ LW +PE EAK++A+QCL +R++P VA +ALFL+SD ++C+ Sbjct: 196 IRVNCIIPGAVRTPRQMQLWQSPESEAKLVASQCLRLRIEPEHVARMALFLASDDASRCS 255 Query: 251 GREYYVDAGWLG 262 GR+Y+VDAGW G Sbjct: 256 GRDYFVDAGWYG 267 >ref|YP_003544733.1| SDR-family protein [Sphingobium japonicum UT26S] dbj|BAI96121.1| SDR-family protein [Sphingobium japonicum UT26S] Length = 252 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 163/249 (65%), Positives = 193/249 (77%), Gaps = 1/249 (0%) Query: 12 ALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIATEPSEALVASLKDAAVAPR 71 A+Y SL GKRV I+GGGSGIG LVEAF QGA+V F DIA E SEA+ LK A P Sbjct: 4 AVYPSLKGKRVFISGGGSGIGEGLVEAFAAQGARVAFCDIAQEESEAVAERLKGADFPPI 63 Query: 72 FFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHKSEDVTPAYWDERLAVNLRHQ 131 F PC+L ++EA++A +E +GGVDILINNAANDDRH E+VTPAYWDER+AVNLRH Sbjct: 64 FHPCDLRDIEAVQAMIATVEEQLGGVDILINNAANDDRHGIEEVTPAYWDERMAVNLRHL 123 Query: 132 FFCAQAVLPGMRERKGGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDFGRDGV 191 FF AQAV+P M+ GGVILNFGSISWHL LPDL LY TAKAGIEG+T +ARD GRD + Sbjct: 124 FFAAQAVVPAMKRAGGGVILNFGSISWHLALPDLVLYQTAKAGIEGLTRSLARDLGRDNI 183 Query: 192 RVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPVRVDPHDVAALALFLSSDSGAKCTG 251 RVN IIPG ++TPRQ + W+TPE EA+I+AAQCL R+ P DVAALA+FL+SD CTG Sbjct: 184 RVNTIIPGNVKTPRQ-MKWYTPEGEAEIVAAQCLNGRIMPADVAALAMFLASDDARMCTG 242 Query: 252 REYYVDAGW 260 +Y++DAGW Sbjct: 243 HDYFIDAGW 251 >ref|ZP_08870521.1| short-chain dehydrogenase/reductase SDR [Azospirillum amazonense Y2] gb|EGX99884.1| short-chain dehydrogenase/reductase SDR [Azospirillum amazonense Y2] Length = 265 Score = 314 bits (804), Expect = 9e-84, Method: Composition-based stats. Identities = 158/254 (62%), Positives = 192/254 (75%), Gaps = 2/254 (0%) Query: 8 VFEHALYRSLAGKRVVITGGGSGIGAALVEAFVGQGAQVCFLDIATEPSEALVASLKD-A 66 + HA+Y SL GKRV++TGGGSGIGAA+ EAFV QGAQV FLDIA S AL SL + A Sbjct: 12 IMTHAIYPSLQGKRVIVTGGGSGIGAAITEAFVRQGAQVSFLDIAETDSRALEQSLAEGA 71 Query: 67 AVAPRFFPCNLMNLEALRATFTEIETVMGGVDILINNAANDDRHKSEDVTPAYWDERLAV 126 A AP+F+ C+L NL+ L+AT EI+ G VD+L+NNAANDDRH E +TP YWD R+AV Sbjct: 72 AHAPKFYKCDLTNLDQLKATLAEIQNA-GPVDVLVNNAANDDRHTIEQITPEYWDNRMAV 130 Query: 127 NLRHQFFCAQAVLPGMRERKGGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDF 186 NLRH FF +QAV+PGM+ ++ G I+NFGSISWH+ LP+L +Y TAKAGIEGMT +ARD Sbjct: 131 NLRHMFFASQAVVPGMKAQRSGAIINFGSISWHVALPELLMYQTAKAGIEGMTRSLARDL 190 Query: 187 GRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPVRVDPHDVAALALFLSSDSG 246 G VRV ++PG +RT RQ LWH PEEEA+IL+ QCL RVDP VAA+ LFL+SD G Sbjct: 191 GEHNVRVTCVVPGGVRTERQMRLWHNPEEEARILSQQCLKERVDPPHVAAMVLFLASDDG 250 Query: 247 AKCTGREYYVDAGW 260 CT EY+VDAGW Sbjct: 251 RMCTSHEYFVDAGW 264