BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1851.p (501 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777874.1| transmembrane protein [Herbaspirillum serope... 588 e-166 ref|YP_003778010.1| transmembrane protein [Herbaspirillum serope... 414 e-113 ref|YP_003777421.1| transmembrane protein [Herbaspirillum serope... 402 e-110 ref|YP_003280076.1| diguanylate cyclase [Comamonas testosteroni ... 298 2e-78 ref|ZP_07047362.1| diguanylate cyclase [Comamonas testosteroni S... 294 2e-77 >ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65966.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 295/472 (62%), Positives = 364/472 (77%), Gaps = 3/472 (0%) Query: 11 MAGVITSVVLYQSYKQVEHISVNHTLNVARIAQRSISRNMELLSLALDSLAWRYRHTQLH 70 M ++ VLYQS++QVE ++ H N+ARIAQRSISRN+ELL+LALDSL WRYRHTQLH Sbjct: 1 MTATVSCAVLYQSHRQVERAAIEHGANIARIAQRSISRNVELLTLALDSLTWRYRHTQLH 60 Query: 71 RMPAQQQLEFLLGEKIEAGYIAAQGIIDADGERVVGSPVLDEIMPGNFSGRDFFDGPR-Q 129 MP QQ++EFLLGE IEA Y+AA GI+D DGE VVGS L +I+PG ++ DFF + Sbjct: 61 EMPLQQKMEFLLGENIEARYVAALGIVDTDGELVVGSAALSQILPGPYAQSDFFTAHQTH 120 Query: 130 DARGT--LFISSPQAVRLERRAQVIVLSKRLVHVDGSFGGVVFMVLYLDYFRQLFEAMSL 187 A+G L+IS+P VRLERR QV+VLSKRL DGSF G+ MVLYLDYFR LF+ ++L Sbjct: 121 HAQGDTGLYISAPLTVRLERRMQVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGLTL 180 Query: 188 EKNAVMSLYSVEGVAYMRLPYDEAFIGSRVENAPQLQKLLAASAPAEGSYFTRSQQDGVQ 247 E + V+SLYS +G+AYMR+PY+EAFIGSR+ + L+++ + S PA+GSYF R+QQDG + Sbjct: 181 ENDGVISLYSADGLAYMRIPYNEAFIGSRLNISEDLERIFSPSGPAQGSYFARAQQDGPR 240 Query: 248 RLYTYVRVPQTRWVVFIGHTKAALFREWMRMFYAVVFLMALFSTAAFYLISRVREELFRR 307 LYT+ RVP T W VFIG T A +FREW M YAV+FLMA F A+ YLI RVR EL RR Sbjct: 241 WLYTFARVPGTGWTVFIGRTGARIFREWYNMLYAVLFLMASFCIASIYLIRRVRVELQRR 300 Query: 308 SKLDQQLEEQARTDKLTTLLNRRALDEVLQEAWHKCQRNDSARFAVLFADVDFFKLYNDT 367 S LDQQLEE ARTDKLT+LLNRRALDE L AW + + N A F++LF DVDFFKLYNDT Sbjct: 301 SALDQQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDT 360 Query: 368 YGHKAGDYALVAVARCIKGAVSRHCDRAGRYGGEEFVVLLDEADAEGAMHVGKLILAALQ 427 YGHKAGDYAL+AV+RCI AVSR D++GRYGGEEFVVLL+ D GA HV K I++A+Q Sbjct: 361 YGHKAGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQ 420 Query: 428 AQKIPHERSPFGRLTISIGVACLERGVHRSVDEIIKAADEALYQAKREGRNR 479 + KIPHERSPF LT+SIGV L R H S+++++K AD ALY+AK++GRN+ Sbjct: 421 SLKIPHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472 >ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66102.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 219/483 (45%), Positives = 308/483 (63%), Gaps = 1/483 (0%) Query: 1 MTLLVGSLTLMAGVITSVVLYQSYKQVEHISVNHTLNVARIAQRSISRNMELLSLALDSL 60 + +++ LM I++ LYQSY+Q +V++ NV ++QR+ISRN+E+LSL+LD+L Sbjct: 29 LVVILAIAVLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEMLSLSLDTL 88 Query: 61 AWRYRHT-QLHRMPAQQQLEFLLGEKIEAGYIAAQGIIDADGERVVGSPVLDEIMPGNFS 119 A+R++H R+ Q+ +L G +IA ++DADG V S + +++ Sbjct: 89 AYRFQHPLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRGNGAPHYA 148 Query: 120 GRDFFDGPRQDARGTLFISSPQAVRLERRAQVIVLSKRLVHVDGSFGGVVFMVLYLDYFR 179 R +F R L++S P L QV+VLSKRL + DGSF GVV M L L YFR Sbjct: 149 DRAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYFR 208 Query: 180 QLFEAMSLEKNAVMSLYSVEGVAYMRLPYDEAFIGSRVENAPQLQKLLAASAPAEGSYFT 239 +LFE ++L ++SLYS EG+AYMR+PY E IG + Q+L A + EGS+F Sbjct: 209 ELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGSFFA 268 Query: 240 RSQQDGVQRLYTYVRVPQTRWVVFIGHTKAALFREWMRMFYAVVFLMALFSTAAFYLISR 299 + DGV+RLYT+ R+P + +VF+G+ + A+F+ W + FYAV+ +A+F +L+ Sbjct: 269 HATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAIFGLLTAWLLLH 328 Query: 300 VREELFRRSKLDQQLEEQARTDKLTTLLNRRALDEVLQEAWHKCQRNDSARFAVLFADVD 359 VR+EL RR ++QLE ARTD LT LLNRRALDE LQ W +CQRN A F+VLF DVD Sbjct: 329 VRQELRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWERCQRNLGASFSVLFIDVD 388 Query: 360 FFKLYNDTYGHKAGDYALVAVARCIKGAVSRHCDRAGRYGGEEFVVLLDEADAEGAMHVG 419 +FK YNDTYGHK GD L VA + + RH D AGRYGGEEFVVLL++ D +GA + Sbjct: 389 YFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMMA 448 Query: 420 KLILAALQAQKIPHERSPFGRLTISIGVACLERGVHRSVDEIIKAADEALYQAKREGRNR 479 + + A++ + I H SP +TIS+GVA LER HR V++++ AAD ALY+AK+ GR+R Sbjct: 449 QRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAADAALYRAKQAGRDR 508 Query: 480 VRL 482 V L Sbjct: 509 VHL 511 >ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65513.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 212/482 (43%), Positives = 299/482 (62%), Gaps = 2/482 (0%) Query: 1 MTLLVGSLTLMAGVITSVVLYQSYKQVEHISVNHTLNVARIAQRSISRNMELLSLALDSL 60 + L++G + +M I LY+ Y+Q ++ NV I QR+ISRNME+LSLA+D+L Sbjct: 8 LALILGLIIMMVLSICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTL 67 Query: 61 AWRYRHT-QLHRMPAQQQLEFLLGEKIEAGYIAAQGIIDADGE-RVVGSPVLDEIMPGNF 118 A+RY+H L +++ +L G A +I A I+DADG RV + N+ Sbjct: 68 AYRYQHPLDLTHASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVNY 127 Query: 119 SGRDFFDGPRQDARGTLFISSPQAVRLERRAQVIVLSKRLVHVDGSFGGVVFMVLYLDYF 178 S R +F R A LFIS P L V+VLSKRL DGSF GVV M L + YF Sbjct: 128 SERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYF 187 Query: 179 RQLFEAMSLEKNAVMSLYSVEGVAYMRLPYDEAFIGSRVENAPQLQKLLAASAPAEGSYF 238 R LF ++L ++ +MSLYS +GV YMR+PY + IG + N P Q+L A +G++F Sbjct: 188 RDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFF 247 Query: 239 TRSQQDGVQRLYTYVRVPQTRWVVFIGHTKAALFREWMRMFYAVVFLMALFSTAAFYLIS 298 R+ DGV+RLYT+ R+P +V +G ++ +F+ W Y+V+ L+ +F+ A L+ Sbjct: 248 ARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVLLM 307 Query: 299 RVREELFRRSKLDQQLEEQARTDKLTTLLNRRALDEVLQEAWHKCQRNDSARFAVLFADV 358 VR EL +R ++QLE+ ARTD LT LLNRR+LDE L W + QR+ +A F+ LF DV Sbjct: 308 LVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGFSTLFIDV 367 Query: 359 DFFKLYNDTYGHKAGDYALVAVARCIKGAVSRHCDRAGRYGGEEFVVLLDEADAEGAMHV 418 D+FK YNDTYGH+ GD L AVA ++ + R D AGRYGGEEFVVLL++ D GA+ + Sbjct: 368 DYFKRYNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTDEHGALRM 427 Query: 419 GKLILAALQAQKIPHERSPFGRLTISIGVACLERGVHRSVDEIIKAADEALYQAKREGRN 478 + + A+ + IPH SP G +++SIGVA + R H+ +++++ AAD ALY AKREGRN Sbjct: 428 AQQLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRMEDVLNAADHALYIAKREGRN 487 Query: 479 RV 480 RV Sbjct: 488 RV 489 >ref|YP_003280076.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gb|ACY34780.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 521 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 175/497 (35%), Positives = 269/497 (54%), Gaps = 9/497 (1%) Query: 1 MTLLVGSLTLMAGVITSVVLYQSYKQVEHISVNHTLNVARIAQRSISRNMELLSLALDSL 60 M + G++ L I + LYQS +V + NVA +A+ + RN+EL SL+L ++ Sbjct: 21 MLFVAGAIALSMAAICAAALYQSRLDTMKHAVETSRNVALLAENDVVRNLELYSLSLQAV 80 Query: 61 AWRYRHTQLHRMPAQQQLEFLLGEKIEAGYIAAQGIIDADGERVVGSPVLDEIMPGN--F 118 ++ + L + A Y+ + I+D +G + + +I PGN Sbjct: 81 IDGLNDPEVMAASPHLREVALFDKAATASYLGSILILDTEGNIAIDA---QKINPGNVNL 137 Query: 119 SGRDFFDGPRQDARGTLFISSPQAVRLERRAQVIVLSKRLVHVDGSFGGVVFMVLYLDYF 178 SG DFF R+++ L++ P A L A I LS+R+ H DGSF GVV + + L+YF Sbjct: 138 SGHDFFTVHRENSAKGLYVGDPYASPLHDGALSIPLSRRISHADGSFAGVVLIDVQLEYF 197 Query: 179 RQLFEAMSLEKNAVMSLYSVEGVAYMRLPYDEAFIGSRVENAPQLQKLLAASAPAEGSYF 238 R+LF +SL +N ++L +G MR P+D IG + NA ++ +A EGS+ Sbjct: 198 RKLFSGLSLGENGSLALIRKDGAMMMRQPFDAKVIGRNIRNASTFKRFIAEP---EGSFS 254 Query: 239 TRSQQDGVQRLYTYVRVPQTRWVVFIGHTKAALFREWMRMFYAVVFLMALFSTAAFYLIS 298 S DG RLY + +P +++ + + +F W + + LM + + A L Sbjct: 255 DTSYLDGTHRLYYFKNLPSLPFIIMVAKAHSDIFTAWRKRALIIACLMGVLTAAFIGLSF 314 Query: 299 RVREELFRRSKLDQQLEEQARTDKLTTLLNRRALDEVLQEAWHKCQRNDSARFAVLFADV 358 +L RR + +L ARTD LT L NRR LDE+L + WH+ +RN S F++LF D+ Sbjct: 315 AFVTQLQRRIHAESELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSI-FSLLFVDI 373 Query: 359 DFFKLYNDTYGHKAGDYALVAVARCIKGAVSRHCDRAGRYGGEEFVVLLDEADAEGAMHV 418 D FK+YNDTYGH+AGD + +A+CI + R D A RYGGEEF+V+L + EGA + Sbjct: 374 DRFKVYNDTYGHQAGDDVIATIAQCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCL 433 Query: 419 GKLILAALQAQKIPHERSPFGRLTISIGVACLERGVHRSVDEIIKAADEALYQAKREGRN 478 + I AA+ + H S FG +T+SIG A E V +I++ADEALY+AK GRN Sbjct: 434 AESIRAAVSQLSVEHSGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRN 493 Query: 479 RVRLYQATAKVVPAEWQ 495 +V ++ + A+++ Sbjct: 494 KVVVFTKSPTQRAADFR 510 >ref|ZP_07047362.1| diguanylate cyclase [Comamonas testosteroni S44] gb|EFI58924.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 501 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 173/482 (35%), Positives = 261/482 (54%), Gaps = 9/482 (1%) Query: 1 MTLLVGSLTLMAGVITSVVLYQSYKQVEHISVNHTLNVARIAQRSISRNMELLSLALDSL 60 M + G++ L I + LYQS +V + NVA +A+ + RN+EL SL+L ++ Sbjct: 1 MLFVAGAIALSMAAICAAALYQSRLDTMKHAVETSRNVALLAENDVVRNLELYSLSLQAV 60 Query: 61 AWRYRHTQLHRMPAQQQLEFLLGEKIEAGYIAAQGIIDADGERVVGSPVLDEIMPGN--F 118 ++ + L + A Y+ + I+D +G + + ++ PGN Sbjct: 61 IDGLNDPEVMAASPHLREVALFDKAATASYLGSILILDTEGNIAIDA---QKVNPGNVNL 117 Query: 119 SGRDFFDGPRQDARGTLFISSPQAVRLERRAQVIVLSKRLVHVDGSFGGVVFMVLYLDYF 178 SG DFF R+++ L++ P A L A I LS+R+ H DGSF GVV + + L+YF Sbjct: 118 SGHDFFTVHRENSAKGLYVGDPYASPLHGGALSIPLSRRISHADGSFAGVVLIDVQLEYF 177 Query: 179 RQLFEAMSLEKNAVMSLYSVEGVAYMRLPYDEAFIGSRVENAPQLQKLLAASAPAEGSYF 238 R+LF +SL +N ++L +G MR P+D IG + NA ++ +A EGS+ Sbjct: 178 RKLFSGLSLGENGSLALIRKDGAMMMRQPFDAKVIGRNIRNASTFKRFIAEP---EGSFS 234 Query: 239 TRSQQDGVQRLYTYVRVPQTRWVVFIGHTKAALFREWMRMFYAVVFLMALFSTAAFYLIS 298 S DG RLY + +P +++ + + +F W + + LM + + A L Sbjct: 235 DISYLDGTHRLYYFKNLPSLPFIIMVAKAHSDIFTAWRQRALIIACLMGVLTAAFIGLSF 294 Query: 299 RVREELFRRSKLDQQLEEQARTDKLTTLLNRRALDEVLQEAWHKCQRNDSARFAVLFADV 358 +L RR + +L ARTD LT L NRR LDE+L + WH+ +RN S F++LF D+ Sbjct: 295 AFVTQLKRRIHAESELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSI-FSLLFVDI 353 Query: 359 DFFKLYNDTYGHKAGDYALVAVARCIKGAVSRHCDRAGRYGGEEFVVLLDEADAEGAMHV 418 D FK YNDTYGH+AGD + +A+CI + R D A RYGGEEF+V+L + EGA + Sbjct: 354 DRFKAYNDTYGHQAGDDVIATIAKCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCL 413 Query: 419 GKLILAALQAQKIPHERSPFGRLTISIGVACLERGVHRSVDEIIKAADEALYQAKREGRN 478 + I AA+ + H S FG +T+SIG A E V +I++ADEALY+AK GRN Sbjct: 414 AESIRAAVSQLSVEHSGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRN 473 Query: 479 RV 480 +V Sbjct: 474 KV 475