BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1850.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777875.1| D-alanyl-D-alanine carboxypeptidase [Herbasp... 526 e-147 ref|YP_441464.1| D-alanyl-D-alanine carboxypeptidase family prot... 278 2e-72 ref|YP_004361646.1| D-alanyl-D-alanine carboxypeptidase family p... 270 3e-70 ref|ZP_04814746.1| D-alanyl-D-alanine carboxypeptidase family pr... 269 9e-70 ref|ZP_02489022.1| D-alanyl-D-alanine carboxypeptidase family pr... 268 1e-69 >ref|YP_003777875.1| D-alanyl-D-alanine carboxypeptidase [Herbaspirillum seropedicae SmR1] gb|ADJ65967.1| D-alanyl-D-alanine carboxypeptidase protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 299/398 (75%), Positives = 326/398 (81%), Gaps = 13/398 (3%) Query: 65 MFRTQQSRSGNDLRFSLLILRRAGLLARLLLCSALLLVLSVISGKTSEAQAAGSTAGKHR 124 M T + G+ L +LRRAG +ARL++CS L+L+L+ ++GK SEAQAAGS+AGKHR Sbjct: 1 MLSTLRPPYGHATPLFLSLLRRAGAVARLMMCSLLVLMLATLAGKFSEAQAAGSSAGKHR 60 Query: 125 AVATGVKGRKRDLRKKTPVQSKARAPSHPRRHGRGRAPGAATAAAAVTAAGATAATDTAA 184 + ATG KGRKR +RKK + A P+ + A AA A A A Sbjct: 61 SAATGAKGRKRTVRKK----ASADKPA---------RTARSRRALRRPAAAAAVAGTAAT 107 Query: 185 PAEASAKTATAVATNTKPELLPRCGFTEASRRHIFSRGVYVLDEETNTPLFERNADTVAP 244 A A+ T + + KPELL RCGFTEASRRHIFSRGVYVLDE+T TPLFERNADTVAP Sbjct: 108 AATAATATPASAPASGKPELLARCGFTEASRRHIFSRGVYVLDEQTGTPLFERNADTVAP 167 Query: 245 IASVTKLMTAIVWLDQKSLPMANRLEVTEDDLDNLKFTHSRLNVGASLSRADMLHIALMS 304 IASVTKLMTAIVWLDQK L M NRLEVTEDDLD LKFTHSRL VGASLSRADMLHIALMS Sbjct: 168 IASVTKLMTAIVWLDQKQLAMGNRLEVTEDDLDTLKFTHSRLGVGASLSRADMLHIALMS 227 Query: 305 SENRAAAAMSRDYPGGRPAFIAAMNARAQALGMPHTHFENGTGLSPENVSTPRELAELVK 364 SENRAAAA+SRDYPGGRPAFIAAMNARAQALGM HTHFEN TGLSPENVSTPRELA LV+ Sbjct: 228 SENRAAAALSRDYPGGRPAFIAAMNARAQALGMSHTHFENATGLSPENVSTPRELAALVQ 287 Query: 365 AANRYQLIRNDSLDKQKIINIGRGQLQYINSNRLIRYGQVNATVQKTGFINESGHNMVLR 424 AANRYQLIRNDSLDKQK+INIGRGQLQYINSNRLIRYGQVNA+VQKTGFINESGHNMVLR Sbjct: 288 AANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQVNASVQKTGFINESGHNMVLR 347 Query: 425 LLVHDRRPVIVTMLGSGTADGSRLDGVRIAKWLNCSLN 462 +LVHDRRPVIVTMLGSG+ADGSRLDGVRIAKWLNCSLN Sbjct: 348 MLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWLNCSLN 385 >ref|YP_441464.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] ref|ZP_05588119.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] gb|ABC37756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia thailandensis E264] Length = 383 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 178/374 (47%), Positives = 224/374 (59%), Gaps = 5/374 (1%) Query: 89 LLARLLLCSALLLVLSVIS-GKTSEAQAAGSTAGKHRAVATGVKGRKRDLRKKTPVQSKA 147 L RLL + + SV+S S A+AAG+ + +VA G R T A Sbjct: 13 FLVRLLFVVCVFWISSVVSVAFASPARAAGANCAR-ASVAHGHACRVAR-HAHTKRTKHA 70 Query: 148 RAPSHPRRHGRGRAPGAATAAAAVTAAGATAATDTAAPAEASAKTATAVATNTKPELLPR 207 + +H R H TAA + AV KP+LL R Sbjct: 71 KRTTHARHHAPHVKHKRVAIPRKTGHRARTAAHSPHPKRKRPRTPRRAVVAAAKPQLLAR 130 Query: 208 CGFTEASRRHIFSRGVYVLDEETNTPLFERNADTVAPIASVTKLMTAIVWLDQKSLPMAN 267 CG+T ASR + SR +YV+DE T T L ERNA+ V PIASVTKLMT++V LD ++ PM+ Sbjct: 131 CGYTAASRHLLRSRAIYVVDERTGTVLIERNANCVVPIASVTKLMTSMVALDTRA-PMSR 189 Query: 268 RLEVTEDDLDNLKFTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAA 327 L V+ D D KFT SRL VG+ L R DMLHIALMSSENRAAAA+SRDYPGGRPAF+AA Sbjct: 190 PLRVSAQDRDYEKFTGSRLKVGSVLPRRDMLHIALMSSENRAAAALSRDYPGGRPAFVAA 249 Query: 328 MNARAQALGMPHTHFENGTGLSPENVSTPRELAELVKAANRYQLIRNDSLDKQKIINIGR 387 MN +A+ LGM HTHF N TGLSP NVST R+L+ LV AA+RY I++ S D K + GR Sbjct: 250 MNRKARTLGMKHTHFVNATGLSPRNVSTARDLSRLVAAASRYPHIKSFSTDTSKTVFPGR 309 Query: 388 GQLQYINSNRLIRYGQVNATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGTADGSR 447 GQL Y+NS+ L+R G + +QKTGFINE+GH +VLR V RPV + +LG+ Sbjct: 310 GQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRG-RPVDIVLLGAPGPHDHV 368 Query: 448 LDGVRIAKWLNCSL 461 D +I +WL CS+ Sbjct: 369 ADAAKIRRWLTCSM 382 >ref|YP_004361646.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] gb|AEA61690.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia gladioli BSR3] Length = 411 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 172/330 (52%), Positives = 219/330 (66%), Gaps = 5/330 (1%) Query: 133 RKRDLRKKTPVQSKARAPSHPRRHGRGRAPGAATAAAAVTAAGATAATDTAAPAEASAKT 192 RK+ R+ TP A A H R H + A G + G TA+ A+A+ Sbjct: 87 RKKPRRRVTP--KPAVAAQHERLHRKRAARGPHPKRKPLPTPGHAPRA-TASARAAAAQA 143 Query: 193 ATAVATNTKPELLPRCGFTEASRRHIFSRGVYVLDEETNTPLFERNADTVAPIASVTKLM 252 A A + +P+LL CG+T A++R + SR +YV+DE T T L ERNA + PIASV+KLM Sbjct: 144 AAAASAGARPQLLASCGYTPATKRLLRSRAIYVVDERTGTVLLERNASQIRPIASVSKLM 203 Query: 253 TAIVWLDQKSLPMANRLEVTEDDLDNLKFTHSRLNVGASLSRADMLHIALMSSENRAAAA 312 TA+V LD+ + P+A R+ VT D D +KFT SRL VG++LSR DMLHIALMSSENRAAAA Sbjct: 204 TAVVSLDRHA-PLARRISVTGADRDTIKFTGSRLKVGSTLSRRDMLHIALMSSENRAAAA 262 Query: 313 MSRDYPGGRPAFIAAMNARAQALGMPHTHFENGTGLSPENVSTPRELAELVKAANRYQLI 372 +SRDYPGGRPAF+AAMN +A+ LGM +THF N TGLSP NVST R+L+ LV AANRY I Sbjct: 263 LSRDYPGGRPAFVAAMNRKARTLGMSNTHFVNATGLSPRNVSTARDLSRLVAAANRYSTI 322 Query: 373 RNDSLDKQKIINIGRGQLQYINSNRLIRYGQVNATVQKTGFINESGHNMVLRLLVHDRRP 432 R S D+ +I+ G GQL Y+NSN L+R G T+QKTGFINE+GH +V+R + RP Sbjct: 323 RAFSTDRAQIVRPGHGQLSYVNSNALVRGGDRRITLQKTGFINEAGHCVVMRYQI-GARP 381 Query: 433 VIVTMLGSGTADGSRLDGVRIAKWLNCSLN 462 V V +L + D +RI WLNCSL+ Sbjct: 382 VDVVLLDAPGPRDHIADAIRIRNWLNCSLH 411 >ref|ZP_04814746.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gb|EES25371.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] Length = 428 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 182/376 (48%), Positives = 225/376 (59%), Gaps = 12/376 (3%) Query: 89 LLARLLLCSALLLVLSVIS-GKTSEAQAAGSTAGKHRAVATGVKGRKRDLRKKTPVQSKA 147 L RLL ++ + SV+ G S A AAG + A A G R Q A Sbjct: 61 LPVRLLFAVCIVWIASVLGVGFASPAHAAGKACARTSA-AHGHACRSARAAHAKHAQRAA 119 Query: 148 RAPSHP--RRHGRGRAPGAATAAAAVTAAGATAATDTAAPAEASAKTATAVATNTKPELL 205 RA H +H R PG A A TAA + V KP+LL Sbjct: 120 RARHHAPHAKHKRAAIPGKAGHRAR------TAAHRHHPKRKRPRAARDTVVAAAKPQLL 173 Query: 206 PRCGFTEASRRHIFSRGVYVLDEETNTPLFERNADTVAPIASVTKLMTAIVWLDQKSLPM 265 RCG+T ASR + SR +YV+DE T T L ERNA+ V PIASVTKLMT++V LD ++ PM Sbjct: 174 ARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRA-PM 232 Query: 266 ANRLEVTEDDLDNLKFTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFI 325 + L V+ D D KFT SRL VG+ LSR DMLHIALMSSENRAAAA+SRDYPGGRPAF+ Sbjct: 233 SRPLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 292 Query: 326 AAMNARAQALGMPHTHFENGTGLSPENVSTPRELAELVKAANRYQLIRNDSLDKQKIINI 385 AAMN +A+ LGM THF N TGLSP NVST R+L+ LV AA+RY I+ S K + Sbjct: 293 AAMNRKARTLGMKRTHFVNATGLSPRNVSTARDLSRLVAAASRYPRIKTFSTATSKTVFP 352 Query: 386 GRGQLQYINSNRLIRYGQVNATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGTADG 445 GRGQL+Y+NS+ L+R G + +QKTGFINE+GH +VLR V RPV + +LG+ Sbjct: 353 GRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRG-RPVDIVLLGAPGPHD 411 Query: 446 SRLDGVRIAKWLNCSL 461 D +I +WL CS+ Sbjct: 412 HVADAAKIRRWLTCSM 427 >ref|ZP_02489022.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei NCTC 13177] Length = 378 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 181/376 (48%), Positives = 226/376 (60%), Gaps = 12/376 (3%) Query: 89 LLARLLLCSALLLVLSVIS-GKTSEAQAAGSTAGKHRAVATGVKGRKRDLRKKTPVQSKA 147 L RLL ++ + SV+ G S A AAG + ++ A G R Q A Sbjct: 11 LPVRLLFAVCIVWIASVLGVGFASPAHAAGKACAR-KSAAHGHACRSARAAHAKHAQRAA 69 Query: 148 RAPSHP--RRHGRGRAPGAATAAAAVTAAGATAATDTAAPAEASAKTATAVATNTKPELL 205 RA H +H R PG A A TAA + V KP+LL Sbjct: 70 RARHHAPHAKHKRAAIPGKAGHRAR------TAAHRHHPKRKRPRAARDTVVAAAKPQLL 123 Query: 206 PRCGFTEASRRHIFSRGVYVLDEETNTPLFERNADTVAPIASVTKLMTAIVWLDQKSLPM 265 RCG+T ASR + SR +YV+DE T T L ERNA+ V PIASVTKLMT++V LD ++ PM Sbjct: 124 ARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRA-PM 182 Query: 266 ANRLEVTEDDLDNLKFTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFI 325 + L V+ D D KFT SRL VG+ LSR DMLHIALMSSENRAAAA+SRDYPGGRPAF+ Sbjct: 183 SRPLRVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGGRPAFV 242 Query: 326 AAMNARAQALGMPHTHFENGTGLSPENVSTPRELAELVKAANRYQLIRNDSLDKQKIINI 385 AAMN +A+ LGM THF N TGLSP NVST R+L+ LV AA+RY I+ S K + Sbjct: 243 AAMNRKARTLGMKRTHFVNATGLSPRNVSTARDLSRLVAAASRYPRIKTFSTATSKTVFP 302 Query: 386 GRGQLQYINSNRLIRYGQVNATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGTADG 445 GRGQL+Y+NS+ L+R G + +QKTGFINE+GH +VLR V RPV + +LG+ Sbjct: 303 GRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRG-RPVDIVLLGAPGPHD 361 Query: 446 SRLDGVRIAKWLNCSL 461 D +I +WL CS+ Sbjct: 362 HVADAAKIRRWLTCSM 377