BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1847.p (523 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777877.1| autotransporter adhesin protein [Herbaspiril... 509 e-142 ref|YP_003774512.1| inner membrane protein [Herbaspirillum serop... 250 6e-64 ref|YP_003776437.1| cell wall surface anchor protein [Herbaspiri... 249 7e-64 ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspiril... 241 2e-61 >ref|YP_003777877.1| autotransporter adhesin protein [Herbaspirillum seropedicae SmR1] gb|ADJ65969.1| autotransporter adhesin protein; hemagglutinin/hemolysin protein [Herbaspirillum seropedicae SmR1] Length = 3631 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 293/437 (67%), Positives = 338/437 (77%), Gaps = 2/437 (0%) Query: 88 SLKSYQMFDKLGSGATSFSLLQQGSSLDTLGAWLRLGLKPATAGGRDNVTLEMLGGFKRN 147 +LKSY +F++ + +++QQ S D LG+WL L D+V L LG F N Sbjct: 3196 NLKSYTLFNQPLNPGQEVAVMQQAGS-DALGSWLSFTLVRQAGRQADDVYLNHLGSFVLN 3254 Query: 148 GVDQHKVQPDLETGLSDVGLANIGLLYQLSVANTSSRPVIRVRFDSSNNVAGNVIELYEG 207 +D ++ + + S LAN+GLLYQ+ + P ++V +D+S G+V+ L+EG Sbjct: 3255 HLDLYRSETSRDKSQSGYDLANVGLLYQIDTHRPNKTPTLQVGYDASRAAVGDVVALFEG 3314 Query: 208 GRLVGSKTLVASDLGGGPKEVDVAVFQSLSAGRHDLEVRYTDTGGNSVNSNLS-VNVAAG 266 G ++ K L A+DLG G K V++ V QSL+ G HD+ RYTD GN+VN V+VA G Sbjct: 3315 GTMLARKVLTAADLGSGTKTVNLTVAQSLAPGEHDIVARYTDLAGNTVNGTAQHVSVAGG 3374 Query: 267 GAPVTLSDLGVRGSKQSASEAQSLGQSGASYAVISDADTSFASGHGNQGPVFVGTVGGGS 326 G PVTL+DL VR SKQ+ + Q+L S YAVI+D DTS SGH GPV G VGGG Sbjct: 3375 GDPVTLTDLAVRSSKQAPAAVQALNASENRYAVINDLDTSDISGHSASGPVISGKVGGGR 3434 Query: 327 ASDRYLVTIQMGGKVVAFEDVGAGDFSISLSAGSLAPGLYRDLTVTASRASGNEPGQSTA 386 SDRY+VT++MGGKV+AF++VGAGDFSISLSAGSLAPGLYRDLTVTASRASGNEPGQSTA Sbjct: 3435 DSDRYVVTVEMGGKVLAFDEVGAGDFSISLSAGSLAPGLYRDLTVTASRASGNEPGQSTA 3494 Query: 387 VQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFVQTGAGQDKVIVGAFGRSDNL 446 VQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFVQTGAGQDKVIVGAFGRSDNL Sbjct: 3495 VQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFVQTGAGQDKVIVGAFGRSDNL 3554 Query: 447 AATVGDFVLGVDKVEVFNQSLTQANLSRFVTASAGVNPNDTRLSIDLDGAGPGTLTYTLM 506 AATVGDFVLGVDKVEVFNQSLTQANLSRFVTASAGVNPNDTRLSIDLDGAGPGTLTYTLM Sbjct: 3555 AATVGDFVLGVDKVEVFNQSLTQANLSRFVTASAGVNPNDTRLSIDLDGAGPGTLTYTLM 3614 Query: 507 LQNVAYNSANTATIFGL 523 LQNVAYNSANTATIFGL Sbjct: 3615 LQNVAYNSANTATIFGL 3631 >ref|YP_003774512.1| inner membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62604.1| inner membrane protein (Large repetitive protein) [Herbaspirillum seropedicae SmR1] Length = 1882 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 167/448 (37%), Positives = 251/448 (56%), Gaps = 19/448 (4%) Query: 84 TSIGSLKSYQMFDKLGSGATSFSLLQQGSSLDTLGAWLRLGLKP--ATAGGRDNVTLEML 141 T+ KSY +FDK + SF + Q GA+++ + ATA G+ + L Sbjct: 1446 TTFAEYKSYLVFDKPLTSGQSFGMAHQS------GAYVKGNMFSFTATADGK-GLVLTNK 1498 Query: 142 GGFKRNGVDQHKVQPDLETGLSDVGLANIGLLYQLSVANTSSRPVIRVRFDSSNNVAGNV 201 GG + +D ++ ++ + + NI +LYQ+ ++ P ++V+F++S G++ Sbjct: 1499 GGSYASNLDMYQFGGSEQSTNGNYDIGNIRILYQVDTGMSNLNPTVKVKFNASEASVGDI 1558 Query: 202 IELYEGGRLVGSKTLVASDLGGGPKEVDVAVFQSLSAGRHDLEVRYTDTGGNSVNSNLSV 261 + + G V SKTL A+DL V + + +S+ + L Y + GN ++N Sbjct: 1559 VSVRSGNS-VASKTLTANDLASPEASVSLTLAESILGSDNYLYTEYKEASGNIASANEIT 1617 Query: 262 NVA----AGGAPVTLSDLGVRGSKQSASEAQSLGQSGASYAVISDADTSFASGHGNQGPV 317 A + APV LSDL V + Q+L S YA ISD +A G+ +G + Sbjct: 1618 AYADRPQSVVAPV-LSDLNVASPNKGG--VQALNDSTTQYASISDPGAPWAPGNYERGLL 1674 Query: 318 FVGTVGGGSASDRYLVTIQMGGKVVAFEDVGAGDFSISLSAGSLAPGLYRDLTVTASR-A 376 F G VG +SD+YL+T++MG KV+AF+ V AGDF++S +A +APGL+ DL+ TA+ Sbjct: 1675 FGGKVGAEGSSDKYLITVKMGSKVLAFDTVNAGDFTLSSAANLIAPGLHEDLSFTATNIT 1734 Query: 377 SGNEPGQSTAVQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFVQTGAGQDKVI 436 SGN G ++ V GLKLG YWA Q + D GG+GND+ ++G T + +QT G D + Sbjct: 1735 SGNNNGMTSTVTGLKLGHYWATQFLGDTRGGHGNDNFLLGATKNGLNTLIQTNGGDDTLT 1794 Query: 437 VGAFGRSDNLAATVGDFVLGVDKVEVFNQSLTQANLSRFVTASAGVN-PNDTRLSIDLDG 495 +GAFG+ N AAT+ DF G DK+ VF +S+ NL +FV A + N T++ +DLDG Sbjct: 1795 LGAFGKQGNFAATITDFTAGADKIAVFGKSIDLGNLQQFVKEVAPIQGGNGTKVVVDLDG 1854 Query: 496 AGPGTLTYTLMLQNVAYNSANTATIFGL 523 A G TYTL LQNVAY ANT T+FG+ Sbjct: 1855 AAAGNQTYTLHLQNVAYQPANTHTLFGI 1882 >ref|YP_003776437.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1] gb|ADJ64529.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1] Length = 7175 Score = 249 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 174/404 (43%), Positives = 238/404 (58%), Gaps = 14/404 (3%) Query: 129 TAGGRDNVTLEMLGGFKRNGVDQHKVQPDLETGLSDVGLANIGLLYQLSVANTSSRPVIR 188 TA + L GF D PD + N+ LL+Q AN +++P I+ Sbjct: 6777 TAPDAKTLVLNAQAGFDDVNTDVFAFNPDGVPMDKGYDIGNLRLLFQAPTANVNTQPTIQ 6836 Query: 189 VRFDSSNNVAGNVIELYEGGRLVGSKTLVASDLGGGPKEVDVAVFQSLSAGRHDLEVRYT 248 V FD + AG+VI L EGG+++ S+TL +DLG + + SL AG+H L +Y Sbjct: 6837 VSFDGTRAAAGDVIRLMEGGQVLASRTLSDADLGSSNVTLSLTPASSLGAGQHTLSSKYI 6896 Query: 249 DTGGNSVNSN-LSVNVAAGGAPVTLSDLGVRGSKQSASEAQSLGQSGASYAVISDA--DT 305 D GN+V N + NV G LS+L V G Q+ AQ++ S YA++S A D+ Sbjct: 6897 DVAGNTVTGNDIVFNVQGGATAPVLSNLKVSGDGQA---AQAINDSTTRYAMVSAAAGDS 6953 Query: 306 SFASGHGNQGPVFVGTVGGGSASDRYLVTIQMGGKVVAFEDVGAGDFSISLSAGSLAPGL 365 + +SG +Q F GTVG + YLVT+ MGGK++AF AGDF + A LAPG Sbjct: 6954 TGSSGLQHQLS-FTGTVGTAGSGHSYLVTVSMGGKLLAFNQFAAGDFKLEAPANVLAPGF 7012 Query: 366 YRDLTVTASRAS-GNEPGQSTAVQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAAS 424 Y+DL++ A+ + G GQSTA+ G LGWYWA QS++++ G G+D I +G + Sbjct: 7013 YKDLSIVATDVTDGPSNGQSTAIGGQTLGWYWAPQSLTNLTAGAGDDMIPLGAAATANGI 7072 Query: 425 F---VQTGAGQDKVIVGAFGRSDN--LAATVGDFVLGVDKVEVFNQSLTQANLSRFVTAS 479 + VQTGAG+D ++VGA G +D+ L A V DF++G+DKV V Q++T ANL RFVTAS Sbjct: 7073 YNTEVQTGAGKDTLVVGASGATDSARLMARVSDFMVGMDKVSVAGQTVTAANLDRFVTAS 7132 Query: 480 AGVNPNDTRLSIDLDGAGPGTLTYTLMLQNVAYNSANTATIFGL 523 A N T LSIDLDG GPG+LTYTL+L NV Y +NT TIFG+ Sbjct: 7133 AA-PANGTILSIDLDGPGPGSLTYTLLLVNVQYAQSNTHTIFGV 7175 >ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1] gb|ADJ62605.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1] Length = 8016 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 150/378 (39%), Positives = 226/378 (59%), Gaps = 17/378 (4%) Query: 160 TGLSDVGLANIGLLYQLSVANTSSRPVIRVRFDSSNNVAGNVIELYEGGRLVGSKTLVAS 219 TG D+G N+ LLYQ + AN +S P V +D + G+VI LYEG +L+ SKTL ++ Sbjct: 7642 TGGYDMG--NLRLLYQTTTANVNSTPTFAVSYDRARVAVGDVIGLYEGNKLLASKTLESA 7699 Query: 220 DLGG-GPKEVDVAVFQSLSAGRHDLEVRYTD-TGGNSVNSNLSVNVAAGGAPVTLSDLGV 277 D+GG G +++ + SL+ G H + +YT TG S ++ +VN+ L+DL V Sbjct: 7700 DVGGTGTATLNLKISDSLAPGNHAIVSKYTSATGLTSQSTATTVNITGDAKTPLLTDLKV 7759 Query: 278 RGSKQSASEAQSLGQSGASYAVISDADTSFASGHGNQGPVFVGTVG--GGSASDRYLVTI 335 + S A+++ G +Y I+D G ++G +F G+V G + +YLVT+ Sbjct: 7760 KAGYGEESTAKAILLGGDAYTSITDPGRVGTEGTYDKGLIFSGSVNTPGLTGPQKYLVTV 7819 Query: 336 QMGGKVVAFE--------DVGAGDFSISLSAGSLAPGLYRDLTVTASRASGN--EPGQST 385 +GGK++ ++ D F++ ++ LAPGLYRDLT T + + GQ++ Sbjct: 7820 SLGGKLLGYDTFTLSTTDDPATSKFTLQAASNLLAPGLYRDLTATVTNVTEGSIHNGQTS 7879 Query: 386 AVQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFVQTGAGQDKVIVGAFGRSDN 445 ++ LGWYW Q + ++ GG GND +++G + ++ V TGAG + +GAFG+S N Sbjct: 7880 VIKDASLGWYWVGQGMGNLIGGQGNDGMLLGASQTTSPFTVTTGAGAGTLTLGAFGKSSN 7939 Query: 446 LAATVGDFVLGVDKVEVFNQSLTQANLSRFVTASAGVNPNDTRLSIDLDGAGPGTLTYTL 505 L ATV DF LG+DKV+V+ QS+T ANLS F +A+A N T L++DLDG G L+YTL Sbjct: 7940 LTATVTDFQLGLDKVQVWGQSITSANLSSFASATASDNGRSTTLTVDLDGV-RGGLSYTL 7998 Query: 506 MLQNVAYNSANTATIFGL 523 LQNVA+N+ANT TIFG+ Sbjct: 7999 QLQNVAFNAANTQTIFGV 8016