BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1846.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777878.1| outer membrane protein [Herbaspirillum serop... 441 e-121 ref|YP_001353339.1| hypothetical protein mma_1649 [Janthinobacte... 266 4e-69 ref|ZP_08569524.1| hypothetical protein Rhein_0887 [Rheinheimera... 212 1e-52 ref|ZP_05968804.1| conserved hypothetical protein [Enterobacter ... 210 3e-52 ref|ZP_08779655.1| hypothetical protein Mettu_0621 [Methylobacte... 202 8e-50 >ref|YP_003777878.1| outer membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65970.1| outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 328/372 (88%), Positives = 343/372 (92%), Gaps = 7/372 (1%) Query: 67 MTTSTIHPLPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG 126 MTTSTIH LPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG Sbjct: 1 MTTSTIHSLPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSG 60 Query: 127 EGVSAKAIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV 186 EGVSAK IGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV Sbjct: 61 EGVSAKTIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAV 120 Query: 187 ASLATAALLGSAVGSVISGGAKTLGAAGGVLGTGAAATAAAMGPEGAQQAGNLADRASGY 246 ASLATAALLGSAVGSVISGGAKT+GAAGG LGTGAAATAAA+G EGAQQAGNLADRASGY Sbjct: 121 ASLATAALLGSAVGSVISGGAKTVGAAGGALGTGAAATAAAVGSEGAQQAGNLADRASGY 180 Query: 247 FIDSMFRSGTANGTANTSAA-------PAAPVTPAAGSDAANAAPAAPLAAPTPADGREL 299 FID+MFR+ TA G+ +T+++ A + AA AA +APAAPLAA TPADGREL Sbjct: 181 FIDAMFRTPTAGGSNSTNSSAAPAAPVTPAAGSDAATGAAAASAPAAPLAASTPADGREL 240 Query: 300 TSAQRMEVVRVFGYSLANQQLADNDKRYLGQLVARHTGLSQADAEKRVADTFAAYQRNLD 359 +SAQRMEV RVF YSLANQQLAD DKRYLGQLVARHTG+SQADAEKRV DTFAAYQRNL+ Sbjct: 241 SSAQRMEVARVFAYSLANQQLADGDKRYLGQLVARHTGMSQADAEKRVGDTFAAYQRNLE 300 Query: 360 QAATKAKEAADAARKAAAYASLWMFLALLCGAFVASLLATYGGRLRDRNELYGEPVLRHE 419 QAATKAKEAADAARKAAAYASLWMFLALLCGAF+ASLLATYGGRLRDRNELY EPVLRHE Sbjct: 301 QAATKAKEAADAARKAAAYASLWMFLALLCGAFIASLLATYGGRLRDRNELYAEPVLRHE 360 Query: 420 VHEHRAGGPEHQ 431 VHEHRAGGPEHQ Sbjct: 361 VHEHRAGGPEHQ 372 >ref|YP_001353339.1| hypothetical protein mma_1649 [Janthinobacterium sp. Marseille] gb|ABR90759.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 331 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 177/304 (58%), Positives = 210/304 (69%), Gaps = 25/304 (8%) Query: 106 SFILVMLGFGLGFSSISPWSGEGVSAKAIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWA 165 SF+LV+LGFGLGFSS+SPWSG G+SA+AIGYST W+ FTQIAASAIGG++AGRLRVKW Sbjct: 37 SFVLVILGFGLGFSSVSPWSGSGLSAQAIGYSTIIWVAFTQIAASAIGGYIAGRLRVKWT 96 Query: 166 GLHTREVYFRDTAHGLLAWAVASLATAALLGSAVGSVISGGAKTLGAAGGVLGTGAAATA 225 +H EVYFRDTAHG LAWAVASLATAALL SA GSV++GGAK G+AG + A Sbjct: 97 NIHNDEVYFRDTAHGFLAWAVASLATAALLSSAFGSVLAGGAKVAGSAGAAVVAVGGAGM 156 Query: 226 AAMGPEGAQQAGNLADRASGYFIDSMFRSGTANGTANTSAAPAAPVTPAAGSDAANAAPA 285 A+ G GN D +GYF+DS+FR PA A AAN Sbjct: 157 ASEG------TGNAGDGMAGYFVDSLFR-------------PATSAAAANDGQAANG--T 195 Query: 286 APLAAPTPADGRELTSAQRMEVVRVFGYSLANQQLADNDKRYLGQLVARHTGLSQADAEK 345 A LA PA +T AQR EV R+F ++ L D DK YL QL+A+ TG+SQAD EK Sbjct: 196 ATLATEAPA----VTPAQRAEVTRIFANAIRVGSLPDADKNYLTQLLAKRTGMSQADVEK 251 Query: 346 RVADTFAAYQRNLDQAATKAKEAADAARKAAAYASLWMFLALLCGAFVASLLATYGGRLR 405 R+ + +A Y++N+D KAKEAAD+ARKAAAY SLWMF+ALLCGAFVAS AT+GGRLR Sbjct: 252 RINEIYATYKKNVDDGIAKAKEAADSARKAAAYGSLWMFIALLCGAFVASFTATFGGRLR 311 Query: 406 DRNE 409 DR E Sbjct: 312 DRIE 315 >ref|ZP_08569524.1| hypothetical protein Rhein_0887 [Rheinheimera sp. A13L] gb|EGM79029.1| hypothetical protein Rhein_0887 [Rheinheimera sp. A13L] Length = 372 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 166/357 (46%), Positives = 216/357 (60%), Gaps = 26/357 (7%) Query: 75 LPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSGEGVSAKAI 134 +P V+A N S VSW AI AGA AAALS +L++LG GLGFS++SPWS EG+SA + Sbjct: 16 VPSHIVDASGGNQSAVSWAAIFAGAAGAAALSLLLMILGTGLGFSAVSPWSMEGISATSF 75 Query: 135 GYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAVASLATAAL 194 G + WL FTQ+AAS +GG+LAGRLR KW LHT EVYFRDTAHG L WAVASL TA + Sbjct: 76 GVAAIIWLSFTQLAASGMGGYLAGRLRTKWTDLHTDEVYFRDTAHGFLTWAVASLLTAVI 135 Query: 195 LGSAVGSVISGGAKTLGAAGGVLGTGAAATAAAMGPEGAQQAGNLADR-ASGYFIDSMFR 253 + S V +V SG + GG G A A + A + G+ ++ A GYF+DS+FR Sbjct: 136 MTSVVSAVGSGMRASAEMVGGAAGVVAGTAAGSAATMAANENGSGDNKDALGYFVDSLFR 195 Query: 254 SGTANGTANTSAAPAAP---------------VTPAAGSDAANAAPAAPLAAPTPAD--- 295 + + T NT++ P +TP A + A APA A+ + Sbjct: 196 TDAQSSTENTTSRAIQPSPDVLAGRVASSTNALTPEAQAQGA-IAPANETASQVQTERTA 254 Query: 296 GRELTSAQRM------EVVRVFGYSLANQQLADNDKRYLGQLVARHTGLSQADAEKRVAD 349 R S Q + EV R+F +L +L D+ Y+ QL+A+ T LSQ DAE+RV++ Sbjct: 255 SRSNGSDQDIRDIPAGEVTRIFARALYAGELPQEDQSYIAQLIAQQTDLSQQDAEQRVSE 314 Query: 350 TFAAYQRNLDQAATKAKEAADAARKAAAYASLWMFLALLCGAFVASLLATYGGRLRD 406 F + L+ A T A+EAAD ARKA+AYA+LWM +ALL GAFVASL+A YGGR RD Sbjct: 315 GFDKVKTMLENAETTAREAADDARKASAYAALWMAVALLFGAFVASLMAVYGGRQRD 371 >ref|ZP_05968804.1| conserved hypothetical protein [Enterobacter cancerogenus ATCC 35316] gb|EFC55744.1| conserved hypothetical protein [Enterobacter cancerogenus ATCC 35316] Length = 319 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 160/339 (47%), Positives = 210/339 (61%), Gaps = 29/339 (8%) Query: 68 TTSTIHPLPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSGE 127 TT P +S+ A +N S VSWGAI AGA AAA+LS IL+MLG GLG +SISPW + Sbjct: 9 TTLRRDPETYSSLPAASN--SAVSWGAIFAGAAAAASLSMILLMLGAGLGLTSISPWEND 66 Query: 128 GVSAKAIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAVA 187 G+ A +G + WL FTQIAAS +GG+LAGRLR KW H+ EVYFRDTAHG L WAVA Sbjct: 67 GLDASTVGIAAIVWLAFTQIAASGMGGYLAGRLRTKWVATHSNEVYFRDTAHGFLTWAVA 126 Query: 188 SLATAALLGSAVGSVISGGAKTLGAAGGVLGTGAAATAAAMGPEGAQQAGNLADRASGYF 247 SL +A LL + GS+I G AK +GA A A MG G A + +D ++ YF Sbjct: 127 SLISAILLTTTAGSIIGGSAKAIGA------VAGGAATATMG--GVANATSGSDPSTQYF 178 Query: 248 IDSMFRSGTANGTANTSAAPAAPVTPAAGSDAANAAPAAPLAAPTPADGRELTSAQRMEV 307 I S+FR+ + TANTSA TP PA +E++ A+ EV Sbjct: 179 IQSLFRTMNTD-TANTSAVSTNTQTPG------------------PAPQQEVSPAELGEV 219 Query: 308 VRVFGYSLANQQLADNDKRYLGQLVARHTGLSQADAEKRVADTFAAYQRNLDQAATKAKE 367 +F +S+ L D++Y+ QL+++ TG+SQ++AE+RV T+ Q L +A TKA++ Sbjct: 220 TGIFAHSITTGSLPKEDQQYVAQLISQKTGISQSEAEQRVTATYEKAQNALKEAKTKAQQ 279 Query: 368 AADAARKAAAYASLWMFLALLCGAFVASLLATYGGRLRD 406 AAD ARK +Y +LW F++LL GAFVASL AT+GGR RD Sbjct: 280 AADEARKTTSYITLWTFISLLIGAFVASLCATFGGRQRD 318 >ref|ZP_08779655.1| hypothetical protein Mettu_0621 [Methylobacter tundripaludum SV96] gb|EGW21830.1| hypothetical protein Mettu_0621 [Methylobacter tundripaludum SV96] Length = 329 Score = 202 bits (515), Expect = 8e-50, Method: Composition-based stats. Identities = 165/333 (49%), Positives = 207/333 (62%), Gaps = 21/333 (6%) Query: 74 PLPPASVEAVNNNGSGVSWGAILAGAFAAAALSFILVMLGFGLGFSSISPWSGEGVSAKA 133 PL E++ N S VSW AI+AGA A AAL+ IL+MLG GLG SS+SPW+ GVSA Sbjct: 17 PLSGIYPESMQANASAVSWSAIVAGAAATAALALILLMLGTGLGLSSVSPWAYSGVSATT 76 Query: 134 IGYSTAGWLLFTQIAASAIGGFLAGRLRVKWAGLHTREVYFRDTAHGLLAWAVASLATAA 193 G S+ WL FTQ+ AS +GG+LAGRLR +W +HT EVYFRDTAHG L+WAVA+LATAA Sbjct: 77 FGVSSILWLTFTQLVASGMGGYLAGRLRSRWVSVHTDEVYFRDTAHGFLSWAVAALATAA 136 Query: 194 LLGSAVGSVISGGAKTLGAAGGVLGTGAAATAAAMGPEGAQQAGNLADRASGYFIDSMFR 253 LL S +GS++SGG + G A TA G+ GYF+D +FR Sbjct: 137 LLTSVIGSIVSGGIQAGGVAATAAVVTTGNTATV----GSDMTKYHNGEPMGYFVDLLFR 192 Query: 254 SGTANGTANTSAAPAAPVTPAAGSDAANAAPAAPLAAPTPADGRELTSAQRMEVVRVFGY 313 N +A +AP D + A P L P +T+A R EV R+F Sbjct: 193 KDI-----NAAATASAP-------DESGAMPRYNLENLEP-----ITAASRSEVTRIFMN 235 Query: 314 SLANQQLADNDKRYLGQLVARHTGLSQADAEKRVADTFAAYQRNLDQAATKAKEAADAAR 373 S+ L +D RY+G++VA+ TGL++ DAEKRV DT+A Q L +A T AKEAAD+AR Sbjct: 236 SIRTDPLPADDTRYVGRIVAQRTGLTELDAEKRVLDTYARIQTKLREAETAAKEAADSAR 295 Query: 374 KAAAYASLWMFLALLCGAFVASLLATYGGRLRD 406 KA YASLW+F++LL GAFVAS ATYGGR RD Sbjct: 296 KAFIYASLWLFISLLIGAFVASFAATYGGRQRD 328