BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1844.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777882.1| permease [Herbaspirillum seropedicae SmR1] >... 322 4e-86 ref|YP_001352270.1| hypothetical protein mma_0580 [Janthinobacte... 212 3e-53 ref|YP_001098940.1| putative permease [Herminiimonas arsenicoxyd... 199 2e-49 ref|YP_004754060.1| putative permease transmembrane protein [Col... 185 4e-45 ref|ZP_03697355.1| protein of unknown function DUF1275 [Lutiella... 176 3e-42 >ref|YP_003777882.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ65974.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 322 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 212/229 (92%), Positives = 221/229 (96%) Query: 3 AAQRNRLQSSGLAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALADTSQMSILLKFLA 62 AAQRNRLQSS LAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALAD+SQMSILLKFLA Sbjct: 23 AAQRNRLQSSTLAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALADSSQMSILLKFLA 82 Query: 63 FPAFILGVAVARLFIAAIQRRDGRALGWSLLLQLLLLTGFMLCGIAAAPVQSPTAGWVMA 122 FPAFILGVA ARLFIAAIQRR GRALGWSLLLQL+LL GFM+CG+AAAPVQSPTAGWVMA Sbjct: 83 FPAFILGVAAARLFIAAIQRRQGRALGWSLLLQLVLLLGFMVCGVAAAPVQSPTAGWVMA 142 Query: 123 SGLLGTASMGVHSAISRLLLAHLAPTSLMTGNVTQVVIDVVDMLRGAADAGTTERCIKFV 182 +GLLGTASMGVHSAISRLLLAHLAPTSLMTGNVTQVVIDVVDMLRGAADAGTTERC+KFV Sbjct: 143 AGLLGTASMGVHSAISRLLLAHLAPTSLMTGNVTQVVIDVVDMLRGAADAGTTERCVKFV 202 Query: 183 WPVLSFGAGAIAAAFAYHAIGFAGLIVPVLILVAMVVWEFRQPLPAKAA 231 WPVLSFG GAIAAAFAYHAIGFAGLI PVLILVA++V EFRQPLPA +A Sbjct: 203 WPVLSFGVGAIAAAFAYHAIGFAGLIAPVLILVALIVAEFRQPLPADSA 251 >ref|YP_001352270.1| hypothetical protein mma_0580 [Janthinobacterium sp. Marseille] gb|ABR90406.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 253 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 117/216 (54%), Positives = 159/216 (73%) Query: 6 RNRLQSSGLAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALADTSQMSILLKFLAFPA 65 R+++Q+S L FLA YVDTLGF+ALFGLFTAHVTGNF+LIGA +A +LLK LAFPA Sbjct: 7 RHKIQNSSLGFLAGYVDTLGFVALFGLFTAHVTGNFVLIGAEMAHPQGGPLLLKILAFPA 66 Query: 66 FILGVAVARLFIAAIQRRDGRALGWSLLLQLLLLTGFMLCGIAAAPVQSPTAGWVMASGL 125 F+ GV ARLFIA++ +R AL ++ +LQL+LL FM+ G A+P+ + +G+ Sbjct: 67 FVFGVVFARLFIASLLKRGRHALWYAYILQLVLLIAFMVLGYLASPIGNEPTLMAELAGI 126 Query: 126 LGTASMGVHSAISRLLLAHLAPTSLMTGNVTQVVIDVVDMLRGAADAGTTERCIKFVWPV 185 +G +MG HSA RLLL HLAPT++MTGNVTQ+VID VD++ G+A+ +RCIKF+WPV Sbjct: 127 VGAMAMGTHSASGRLLLPHLAPTAMMTGNVTQLVIDSVDVIFGSANDAVKQRCIKFLWPV 186 Query: 186 LSFGAGAIAAAFAYHAIGFAGLIVPVLILVAMVVWE 221 ++FG GA+ AAFAY GF L++P+ IL+ ++ E Sbjct: 187 VAFGVGAVGAAFAYQYAGFLALLLPIFILLYLMYIE 222 >ref|YP_001098940.1| putative permease [Herminiimonas arsenicoxydans] emb|CAL60813.1| conserved hypothetical protein, putative membrane protein [Herminiimonas arsenicoxydans] Length = 236 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 113/216 (52%), Positives = 153/216 (70%) Query: 6 RNRLQSSGLAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALADTSQMSILLKFLAFPA 65 R++ Q+ L FLA YVDTLGF+ALFGLFTAHVTGNF+LIG+ LA+ S+LLK LAFPA Sbjct: 7 RHKTQNISLGFLAGYVDTLGFVALFGLFTAHVTGNFVLIGSELANPQGGSLLLKILAFPA 66 Query: 66 FILGVAVARLFIAAIQRRDGRALGWSLLLQLLLLTGFMLCGIAAAPVQSPTAGWVMASGL 125 F+ GV RL +A + + AL ++ +LQL+LL F++ G A+P+ S +G+ Sbjct: 67 FVFGVVFTRLMVAVLLKFKLHALWYAYILQLVLLIAFLVTGTMASPIGSDPTLMAEIAGV 126 Query: 126 LGTASMGVHSAISRLLLAHLAPTSLMTGNVTQVVIDVVDMLRGAADAGTTERCIKFVWPV 185 +G+ +MG HSA RLLL H PT++MTGNVTQ+VID VD+LRGAAD RC+KF+WPV Sbjct: 127 IGSMAMGAHSAAGRLLLPHFVPTAMMTGNVTQLVIDSVDVLRGAADENVKRRCVKFLWPV 186 Query: 186 LSFGAGAIAAAFAYHAIGFAGLIVPVLILVAMVVWE 221 ++F GA+ AAFAY GF L++P+ IL+ ++ E Sbjct: 187 VAFAIGAVGAAFAYKFAGFYALLLPICILLYLMYIE 222 >ref|YP_004754060.1| putative permease transmembrane protein [Collimonas fungivorans Ter331] gb|AEK63237.1| putative permease transmembrane protein [Collimonas fungivorans Ter331] Length = 246 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 110/199 (55%), Positives = 141/199 (70%), Gaps = 1/199 (0%) Query: 1 MNAAQRNRLQSSGLAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALADTSQMSILLKF 60 M A+ R QS L+FLA YVDT+GF+ALFGLFTAHVTGNF+LIG+ LA+ S +L+K Sbjct: 13 MQASNRRTHQSVVLSFLAGYVDTVGFVALFGLFTAHVTGNFVLIGSELANHSH-GVLIKL 71 Query: 61 LAFPAFILGVAVARLFIAAIQRRDGRALGWSLLLQLLLLTGFMLCGIAAAPVQSPTAGWV 120 LAFPAFI VA+ R+ + ++R + + L+LQL+ L GFM G A P+ A Sbjct: 72 LAFPAFIFAVALTRVTLIWLERGARPPMPYLLMLQLIFLLGFMTAGCLAQPLGDTEAPLA 131 Query: 121 MASGLLGTASMGVHSAISRLLLAHLAPTSLMTGNVTQVVIDVVDMLRGAADAGTTERCIK 180 + +G+ G A MGV +A SRL+L HL PT++MTGNVTQ+VID+VD+LRGAAD +RCIK Sbjct: 132 LLAGICGAACMGVQNASSRLVLQHLTPTTVMTGNVTQLVIDLVDILRGAADEAVRQRCIK 191 Query: 181 FVWPVLSFGAGAIAAAFAY 199 F WPV+ FG GAI AFAY Sbjct: 192 FFWPVVMFGVGAIGGAFAY 210 >ref|ZP_03697355.1| protein of unknown function DUF1275 [Lutiella nitroferrum 2002] gb|EEG09841.1| protein of unknown function DUF1275 [Lutiella nitroferrum 2002] Length = 234 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 105/217 (48%), Positives = 143/217 (65%), Gaps = 1/217 (0%) Query: 3 AAQRNRLQSSGLAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALADTSQMSILLKFLA 62 AA R S L F A YVDTLGF+ALFGLFTAHVTGNF+LIG+ LA S +L+KFLA Sbjct: 10 AAPRISWTSVALGFTAGYVDTLGFVALFGLFTAHVTGNFVLIGSELARPSH-GVLIKFLA 68 Query: 63 FPAFILGVAVARLFIAAIQRRDGRALGWSLLLQLLLLTGFMLCGIAAAPVQSPTAGWVMA 122 FPAF+ G+A+ R + + R L W +QL+LL GFML G+ A P+ + + Sbjct: 69 FPAFVAGIALTRAIVRQQEPRGTSPLPWLYGMQLMLLAGFMLAGLYALPLSDSRSTAALV 128 Query: 123 SGLLGTASMGVHSAISRLLLAHLAPTSLMTGNVTQVVIDVVDMLRGAADAGTTERCIKFV 182 +G+ G A MGV +A SRL L+ L PT++MTGNVTQ+VID++D+ D ER ++F+ Sbjct: 129 AGMFGAAGMGVQNAASRLALSKLTPTTVMTGNVTQLVIDLLDLTCPTPDPAVRERIVRFL 188 Query: 183 WPVLSFGAGAIAAAFAYHAIGFAGLIVPVLILVAMVV 219 WP+L+F GAI AF Y + F L++P+ IL A+++ Sbjct: 189 WPILAFAVGAIGGAFGYVNLSFWALLLPIGILAALLL 225