BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1843.p (477 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777880.1| integral membrane protein [Herbaspirillum se... 248 1e-63 ref|ZP_03630404.1| protein of unknown function DUF1211 [bacteriu... 209 1e-51 ref|YP_002008378.1| hypothetical protein RALTA_B1737 [Cupriavidu... 209 1e-51 ref|ZP_07721800.1| ferrochelatase [Algoriphagus sp. PR1] >gi|126... 206 9e-51 ref|YP_981576.1| hypothetical protein Pnap_1340 [Polaromonas nap... 204 3e-50 >ref|YP_003777880.1| integral membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65972.1| integral membrane protein [Herbaspirillum seropedicae SmR1] Length = 191 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 120/185 (64%), Positives = 140/185 (75%) Query: 287 VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 346 +NKSR+EAFSDGVIAIAITIMVL L TP A L L L P +LSY+LSF+Y+GIYW+NH Sbjct: 1 MNKSRVEAFSDGVIAIAITIMVLELHTPDSASLDALLSLAPQILSYLLSFIYVGIYWLNH 60 Query: 347 HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 406 HHL +A +VDR VL ANL+LLFWLSL+PFVT W+A HHR S PVA YGVVLLMCSVSFL Sbjct: 61 HHLFSMAERVDRSVLLANLNLLFWLSLIPFVTGWIAGHHRDSLPVASYGVVLLMCSVSFL 120 Query: 407 LLKRALRHSEAAHPSLAAMLGHGRKNALSILFYAVAIPLSLATPLGATAIYVLLALLWFL 466 LK LR + HP A +G+ RKN SIL Y +AI S PLGA+ +YV+LALLWF+ Sbjct: 121 WLKLTLRDAVKDHPLAATAIGNSRKNKWSILLYGMAIASSFWLPLGASLLYVILALLWFI 180 Query: 467 PDHHF 471 PD F Sbjct: 181 PDRRF 185 >ref|ZP_03630404.1| protein of unknown function DUF1211 [bacterium Ellin514] gb|EEF59243.1| protein of unknown function DUF1211 [bacterium Ellin514] Length = 194 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 99/186 (53%), Positives = 130/186 (69%) Query: 287 VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 346 + K+RLEAFSDGVIAI ITIMVL ++ P GA + L PL+P LSYVLSFVY+GIYW NH Sbjct: 1 MQKNRLEAFSDGVIAIIITIMVLEMKVPHGADFSALRPLLPVFLSYVLSFVYVGIYWNNH 60 Query: 347 HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 406 HHLL QV+ ++WANLHLLFW SL+PFVT W+ +H + P A YG VLLM ++++ Sbjct: 61 HHLLHATQQVNGPIMWANLHLLFWQSLVPFVTGWMGENHFAALPTALYGFVLLMSAIAYF 120 Query: 407 LLKRALRHSEAAHPSLAAMLGHGRKNALSILFYAVAIPLSLATPLGATAIYVLLALLWFL 466 +L+RA+ + L LG RK LSI+FY++AI L+ A A+YVL+A++WF+ Sbjct: 121 ILQRAIIAKQGRGSLLVGALGRDRKGKLSIVFYSLAIGLAFVNQWLADALYVLVAVMWFV 180 Query: 467 PDHHFE 472 PD E Sbjct: 181 PDRRIE 186 >ref|YP_002008378.1| hypothetical protein RALTA_B1737 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72324.1| conserved hypothetical protein; membrane; DUF1211 [Cupriavidus taiwanensis LMG 19424] Length = 191 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 101/186 (54%), Positives = 128/186 (68%) Query: 287 VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 346 ++K RLEAFSDGVIA+ ITIMVL ++TP G L LAP++P LSYVLS+VY+GIYW NH Sbjct: 1 MDKQRLEAFSDGVIAVIITIMVLEMKTPHGVDLDALAPVLPVFLSYVLSYVYVGIYWNNH 60 Query: 347 HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 406 HHL +L V+ +LWANLHLLFWLSL+PFVT W A +H P A YGVVL+M +++ Sbjct: 61 HHLFRLVEDVNGPILWANLHLLFWLSLVPFVTGWTAENHLSPWPTALYGVVLMMAGIAYY 120 Query: 407 LLKRALRHSEAAHPSLAAMLGHGRKNALSILFYAVAIPLSLATPLGATAIYVLLALLWFL 466 +L L L+A +G K LS++ YA AI LSLA P G AIYVL+A++W + Sbjct: 121 ILTHVLIRHHGEDSPLSAAIGRDFKGKLSVVLYAAAIVLSLAIPWGGVAIYVLVAIMWII 180 Query: 467 PDHHFE 472 PD E Sbjct: 181 PDPRVE 186 >ref|ZP_07721800.1| ferrochelatase [Algoriphagus sp. PR1] gb|EAZ79353.1| ferrochelatase [Algoriphagus sp. PR1] Length = 195 Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 126/186 (67%) Query: 287 VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 346 + K RLEAFSDGV+AI ITIMVL ++ P G L+DL PL+P LLSY+LSF+YIGIYW NH Sbjct: 1 MQKGRLEAFSDGVLAIVITIMVLEIKVPHGDELSDLKPLIPILLSYILSFIYIGIYWNNH 60 Query: 347 HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 406 HH+L V +LWANLHLLFWLSL+PFVT W+ +H S P+A YG++LLM ++++ Sbjct: 61 HHMLHTVKHVSGSILWANLHLLFWLSLIPFVTGWLGENHFASLPMALYGIILLMSAIAYF 120 Query: 407 LLKRALRHSEAAHPSLAAMLGHGRKNALSILFYAVAIPLSLATPLGATAIYVLLALLWFL 466 +L+R + ++ LA +G K LS +FY + I S P A Y+L+AL+W + Sbjct: 121 ILQRIIIKAQGKESILAKAIGKDLKGNLSPIFYILGILASFYKPWIAGIFYILVALMWLI 180 Query: 467 PDHHFE 472 PD E Sbjct: 181 PDPRIE 186 >ref|YP_981576.1| hypothetical protein Pnap_1340 [Polaromonas naphthalenivorans CJ2] gb|ABM36655.1| protein of unknown function DUF1211 [Polaromonas naphthalenivorans CJ2] Length = 191 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 104/186 (55%), Positives = 124/186 (66%) Query: 287 VNKSRLEAFSDGVIAIAITIMVLGLQTPQGAGLADLAPLMPPLLSYVLSFVYIGIYWVNH 346 + K RLEAFSDGVIAI ITIMVL L+ P G L PL+P LSYVLSFV++GIYW NH Sbjct: 1 MGKGRLEAFSDGVIAIIITIMVLELKVPHGTEWETLHPLIPVFLSYVLSFVFVGIYWNNH 60 Query: 347 HHLLQLATQVDRRVLWANLHLLFWLSLLPFVTSWVANHHRQSAPVACYGVVLLMCSVSFL 406 HH+L QV+ +LWANLHLLFWLSL+PFVTSW+ +H + PVA YG VLLM + ++ Sbjct: 61 HHMLHATRQVNGGILWANLHLLFWLSLIPFVTSWMGENHFAALPVALYGTVLLMAACAYF 120 Query: 407 LLKRALRHSEAAHPSLAAMLGHGRKNALSILFYAVAIPLSLATPLGATAIYVLLALLWFL 466 +L RAL LA LG K +SIL YAVAIPLS A A+YV +A +W L Sbjct: 121 ILSRALIALHGKGSPLALALGGDFKGKVSILVYAVAIPLSFVNAWMAIALYVSVASMWLL 180 Query: 467 PDHHFE 472 PD E Sbjct: 181 PDRRIE 186