BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1842.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777883.1| response regulator protein [Herbaspirillum s... 324 4e-87 ref|YP_004501520.1| two component LuxR family transcriptional re... 229 2e-58 ref|ZP_07377065.1| two component transcriptional regulator, LuxR... 228 5e-58 ref|YP_004115798.1| LuxR family two component transcriptional re... 226 1e-57 ref|ZP_06190706.1| transcriptional regulatory protein [Serratia ... 226 1e-57 >ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65975.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 181/206 (87%), Positives = 186/206 (90%) Query: 1 MESTVYVVDDDGMVRTALLRLLASAGLTARGFASADEFLRESLPGAPCCLLLDMKMPGSD 60 ME TV+VVDDD MVRTALLRLLASAG A GFASADEFL+ LP PCCLLLDMKMPGSD Sbjct: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 Query: 61 GFEVVRRLEQRGDAIPVIFISGYGTIPVTVQAMKAGAHEFLTKPIEDERLLGAVQEALAI 120 GFEVVRRLE+RGDAIPVIFISGYGTIP TVQAMKAGAHEFLTKPI+DERLLGAV+EAL I Sbjct: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 Query: 121 AGRDLHQRVEQAASTSRLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 A R L R E AA TSRLE LTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM Sbjct: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQIHSARQR 206 DKMQTKTLADLVRAAERLQI SARQR Sbjct: 181 DKMQTKTLADLVRAAERLQISSARQR 206 >ref|YP_004501520.1| two component LuxR family transcriptional regulator [Serratia sp. AS12] ref|YP_004506472.1| two component LuxR family transcriptional regulator [Serratia sp. AS9] gb|AEF46211.1| two component transcriptional regulator, LuxR family [Serratia sp. AS9] gb|AEF51163.1| two component transcriptional regulator, LuxR family [Serratia sp. AS12] gb|AEG28871.1| two component transcriptional regulator, LuxR family [Serratia sp. AS13] Length = 206 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 122/204 (59%), Positives = 149/204 (73%) Query: 1 MESTVYVVDDDGMVRTALLRLLASAGLTARGFASADEFLRESLPGAPCCLLLDMKMPGSD 60 ME VYVVDDD VR +++RLL SAG +A F A+ FL S P P C++LDM+MP D Sbjct: 1 MEHVVYVVDDDHSVRQSIVRLLNSAGYSAVDFDCAEAFLSHSFPAIPGCIILDMRMPSGD 60 Query: 61 GFEVVRRLEQRGDAIPVIFISGYGTIPVTVQAMKAGAHEFLTKPIEDERLLGAVQEALAI 120 GFEV L+ G +PVIF++GYGTIP++VQAMKAGAHEFLTKP+ + LL AVQEAL + Sbjct: 61 GFEVTDALKASGREMPVIFLTGYGTIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNL 120 Query: 121 AGRDLHQRVEQAASTSRLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 A + Q E R LTPRE+EVLEL I GL+NKQIA ELG+SEITVKVH+RRVM Sbjct: 121 AAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQIAAELGVSEITVKVHRRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQIHSAR 204 DKMQ ++LADLVR AERL + ++ Sbjct: 181 DKMQVRSLADLVRDAERLNLSKSK 204 >ref|ZP_07377065.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gb|EFM21797.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 206 Score = 228 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 121/206 (58%), Positives = 152/206 (73%) Query: 1 MESTVYVVDDDGMVRTALLRLLASAGLTARGFASADEFLRESLPGAPCCLLLDMKMPGSD 60 M S VY+VDDD V +AL LL + T F+SAD+FL +L PCCL+LD+ +PG+D Sbjct: 1 MNSIVYIVDDDAAVTSALTNLLIADDYTVISFSSADDFLSHALTPLPCCLILDINLPGAD 60 Query: 61 GFEVVRRLEQRGDAIPVIFISGYGTIPVTVQAMKAGAHEFLTKPIEDERLLGAVQEALAI 120 GF+V + L RG AIP IF++G+GTIPVTV+AMK GA+EFLTKP+E ER+L AV EAL I Sbjct: 61 GFDVAQALIDRGYAIPTIFLTGFGTIPVTVRAMKTGAYEFLTKPVEPERILQAVAEALEI 120 Query: 121 AGRDLHQRVEQAASTSRLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 A ++L E+ R + LTPRE EV+ LAI GLLNKQIA E+G+SEIT KVHKRRVM Sbjct: 121 AEQNLASSQERREIVQRHQTLTPRESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQIHSARQR 206 +KM ++L DLVRAAERL I +R+R Sbjct: 181 EKMNARSLTDLVRAAERLNIEHSRRR 206 >ref|YP_004115798.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gb|ADU69242.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 206 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 124/206 (60%), Positives = 147/206 (71%) Query: 1 MESTVYVVDDDGMVRTALLRLLASAGLTARGFASADEFLRESLPGAPCCLLLDMKMPGSD 60 M VYVVDDD VR+AL LL+S FA+A FL P P CL+LD+ MPG+D Sbjct: 1 MNHIVYVVDDDESVRSALSNLLSSENYDVIAFATAQAFLDHPFPAVPGCLILDINMPGAD 60 Query: 61 GFEVVRRLEQRGDAIPVIFISGYGTIPVTVQAMKAGAHEFLTKPIEDERLLGAVQEALAI 120 GF VV L RG AIP IF++G+GTIPVTV+AMK GA EFLTKP++ E+LL AV EAL + Sbjct: 61 GFAVVNALNARGYAIPTIFLTGFGTIPVTVRAMKTGACEFLTKPVDPEQLLQAVAEALQM 120 Query: 121 AGRDLHQRVEQAASTSRLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 A +L E+ TSR LTPRE EV+ LAI GLLNKQIA E+GISEIT KVHKRRVM Sbjct: 121 AEENLASSQEKYDITSRHLSLTPRESEVMLLAISGLLNKQIAAEMGISEITAKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQIHSARQR 206 +KM ++L+DLVRAAERL I S R+R Sbjct: 181 EKMNVRSLSDLVRAAERLNILSTRRR 206 >ref|ZP_06190706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA16212.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 206 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 120/204 (58%), Positives = 147/204 (72%) Query: 1 MESTVYVVDDDGMVRTALLRLLASAGLTARGFASADEFLRESLPGAPCCLLLDMKMPGSD 60 ME VYVVDDD VR +++RLL SAG A F A+ FL + P P C++LDM+MP D Sbjct: 1 MEHVVYVVDDDHSVRQSIVRLLNSAGYNAVDFDCAEAFLTHAFPAIPGCIILDMRMPSGD 60 Query: 61 GFEVVRRLEQRGDAIPVIFISGYGTIPVTVQAMKAGAHEFLTKPIEDERLLGAVQEALAI 120 GF V L+ G +PVIF++GYGTIP++VQAMKAGAHEFLTKP+ + LL AVQEAL + Sbjct: 61 GFAVTDALKASGREMPVIFLTGYGTIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNL 120 Query: 121 AGRDLHQRVEQAASTSRLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 A + Q E R LTPRE+EVLEL I GL+NKQIA ELG+SEITVKVH+RRVM Sbjct: 121 AAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQIAAELGVSEITVKVHRRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQIHSAR 204 DKMQ ++LADLVR AERL + ++ Sbjct: 181 DKMQVRSLADLVRHAERLNLSKSK 204