BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1839.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777889.1| AraC family transcription regulator protein ... 333 2e-89 ref|YP_002801335.1| AraC family transcriptional regulator [Azoto... 229 3e-58 ref|ZP_08868062.1| helix-turn-helix- domain containing protein A... 217 2e-54 ref|YP_001349325.1| putative transcriptional regulator [Pseudomo... 214 2e-53 ref|NP_251386.1| transcriptional regulator [Pseudomonas aerugino... 209 3e-52 >ref|YP_003777889.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65981.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 185/293 (63%), Positives = 220/293 (75%), Gaps = 10/293 (3%) Query: 25 IQPLPQRFIKRLRLQDGLGLTRAAQSQVTGVSSGAVPVIDIPGEDAFSVIVQLQDFRHHK 84 +Q P RF+K + LQ G+ L AAQ+Q + PVI+IPG DA+SVIVQLQDFR HK Sbjct: 1 MQDSPSRFMKLIPLQHGMALVHAAQAQPQ--ARVPAPVIEIPGADAWSVIVQLQDFREHK 58 Query: 85 LWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDNVRLQLPRATIEQWSEEGGRRISG 144 LWRGQ+LVHAG HR GE+A+TDLREQWRCQHLS Y+NVRL +PR +E+ EE R + Sbjct: 59 LWRGQRLVHAGAHRRGEVAVTDLREQWRCQHLSGYENVRLLVPRTAMEELGEEIARPVGE 118 Query: 145 LQQRQAVRDPVIWHLVQAMLPMLGEAANDG------DTVFMDSVTLALHTHLARHYGGQP 198 L+ Q DPV++HL QAMLP A G +T+F+DS+ LAL THL + YG Q Sbjct: 119 LRPVQGAADPVLFHLAQAMLPAARTAGAAGAASVASETLFLDSMMLALTTHLWQRYGQQS 178 Query: 199 L--ARNSGRLAGWQQVRVRDYMLAHLGQRLTLAELAAQCGLSRAHFSRAFKLSFGLPPHA 256 A +GRLAGWQ+ RVRD+ML+HL QRL+LAE+AAQ GLSRAHFSRAFK SFGL PHA Sbjct: 179 SRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHA 238 Query: 257 WLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFKQVMGVGPMGWVR 309 WLQ+QRIALAC+LL E GKSM+ IALECGFSDQSHFSRVFKQV G+GP W+R Sbjct: 239 WLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPAAWLR 291 >ref|YP_002801335.1| AraC family transcriptional regulator [Azotobacter vinelandii DJ] gb|ACO80360.1| transcriptional regulator, AraC family [Azotobacter vinelandii DJ] Length = 318 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 117/250 (46%), Positives = 163/250 (65%), Gaps = 3/250 (1%) Query: 62 VIDIPGEDAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDN 121 ++++P DAFS+IVQL+DF H+LWRG++L + GGH M+I L ++ RCQHL+ YDN Sbjct: 42 ILEVPCADAFSIIVQLRDFASHRLWRGKRLAYKGGHVRESMSIAYLGDEVRCQHLAPYDN 101 Query: 122 VRLQLPRATIEQWSEEGGRRISG-LQQRQAVRDPVIWHLVQAMLPMLGEAANDGDTVFMD 180 +RL LPRA++E+ E G G L Q DPV++HL A++P L + + +F+D Sbjct: 102 LRLNLPRASLEETFREAGAGAPGSLDCAQGTLDPVVYHLSLALVPAL-SMPGEANRLFVD 160 Query: 181 SVTLALHTHLARHYGGQ-PLARNSGRLAGWQQVRVRDYMLAHLGQRLTLAELAAQCGLSR 239 V LA+ TH+ YG PL G LA WQ+ R ++ + HL L++AELAA+C LSR Sbjct: 161 QVMLAMCTHIGSRYGKTGPLRDIPGGLAPWQERRAKEMLAEHLADGLSIAELAAECSLSR 220 Query: 240 AHFSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFKQV 299 A+FSRAFK S GL PH WL + R+ A +L+ S+S I L+CGF+DQSHFSRVF+++ Sbjct: 221 AYFSRAFKRSTGLAPHEWLLKMRVEKAKELMLHTSMSLSRIGLDCGFTDQSHFSRVFQKM 280 Query: 300 MGVGPMGWVR 309 G P W R Sbjct: 281 TGAAPSNWRR 290 >ref|ZP_08868062.1| helix-turn-helix- domain containing protein AraC type [Azospirillum amazonense Y2] gb|EGY02334.1| helix-turn-helix- domain containing protein AraC type [Azospirillum amazonense Y2] Length = 275 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 119/252 (47%), Positives = 169/252 (67%), Gaps = 8/252 (3%) Query: 64 DIPGEDAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDNVR 123 DIP D FSVIVQL+DF H+LWRG +LV AGGH +++T L E W C+HLS +DNVR Sbjct: 23 DIPCLDMFSVIVQLRDFARHELWRGGRLVFAGGHSRMALSVTHLGEGWACRHLSSFDNVR 82 Query: 124 LQLPRATIEQWSEEGGR-RISGLQQRQAVRDPVIWHLVQAMLPMLGEAANDGDTVFMDSV 182 +Q+PRA+++ SEE R +SG + ++ DPV + LV A+LP L + + G+ +F+D V Sbjct: 83 VQIPRASLDALSEELERPAVSGFARARSTVDPVAYGLVSALLPAL-DVPDRGNRLFVDQV 141 Query: 183 TLALHTHLARHYGGQ-PLA----RNSGRLAGWQQVRVRDYMLAHLGQRLTLAELAAQCGL 237 LAL H+A+ YGG PLA R G L+ WQ+ R ++++ +LG + +AE+AA+CGL Sbjct: 142 ILALTIHVAQTYGGMAPLAPPGGRRMGGLSQWQEARAKEFLTTNLGDDVAIAEVAAECGL 201 Query: 238 SRAHFSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFK 297 SR+HF +AF+ + G P+ WL R+A A +LLR +S++ IAL CGF+DQSH +RVF Sbjct: 202 SRSHFIKAFRETTGQTPYRWLLDHRVARARELLR-GPQSIAEIALACGFADQSHLTRVFA 260 Query: 298 QVMGVGPMGWVR 309 G+ P W R Sbjct: 261 ATTGMPPAAWRR 272 >ref|YP_001349325.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR82381.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 272 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 108/250 (43%), Positives = 161/250 (64%), Gaps = 3/250 (1%) Query: 62 VIDIPGEDAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDN 121 VI IP D+FSVIVQL+DF H+LW G++LV GGH ++I L ++ +CQH + YDN Sbjct: 14 VIHIPCADSFSVIVQLRDFNSHRLWNGKKLVFDGGHPQKSISIAYLGDEIKCQHRATYDN 73 Query: 122 VRLQLPRATIEQWSEEGGRRISGLQQRQ-AVRDPVIWHLVQAMLPMLGEAANDGDTVFMD 180 VR LPRA+I+++ E G+R+S +R V DPV++HL A+LP A + + +F++ Sbjct: 74 VRFMLPRASIKEFLYEEGQRMSAEPERIIGVDDPVVYHLALALLPSFARAG-ERNELFIE 132 Query: 181 SVTLALHTHLARHYGGQPLARNSGR-LAGWQQVRVRDYMLAHLGQRLTLAELAAQCGLSR 239 V LAL TH+ + P+ +G+ LA WQ R ++ + HL + +++A LA +CGLSR Sbjct: 133 QVMLALLTHVQDRFASTPVPACTGKGLAPWQLRRAKELIAGHLSEGVSVARLAEECGLSR 192 Query: 240 AHFSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFKQV 299 ++F++AFK S G+ PH WL R R+ A +L+ + +S I + CGFSDQ HFSR+F ++ Sbjct: 193 SYFTKAFKCSTGVSPHEWLMRMRVDRAKELMLGSDEPLSQIGVACGFSDQPHFSRIFLRL 252 Query: 300 MGVGPMGWVR 309 G P W R Sbjct: 253 AGASPSTWRR 262 >ref|NP_251386.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] ref|YP_790499.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002440009.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] ref|ZP_04928999.1| hypothetical protein PACG_01611 [Pseudomonas aeruginosa C3719] ref|ZP_04934444.1| hypothetical protein PA2G_01810 [Pseudomonas aeruginosa 2192] gb|AAG06084.1|AE004697_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gb|ABJ11917.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ53118.1| hypothetical protein PACG_01611 [Pseudomonas aeruginosa C3719] gb|EAZ58563.1| hypothetical protein PA2G_01810 [Pseudomonas aeruginosa 2192] emb|CAW27135.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 297 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 107/250 (42%), Positives = 158/250 (63%), Gaps = 3/250 (1%) Query: 62 VIDIPGEDAFSVIVQLQDFRHHKLWRGQQLVHAGGHRSGEMAITDLREQWRCQHLSDYDN 121 VI IP D+FSVIVQL+DF H+LW G +LV GGH ++I L ++ +CQH + YDN Sbjct: 39 VIHIPCADSFSVIVQLRDFNSHRLWNGNKLVFDGGHPRKSISIAYLGDEIKCQHRTTYDN 98 Query: 122 VRLQLPRATIEQWSEEGGRRISGLQQRQ-AVRDPVIWHLVQAMLPMLGEAANDGDTVFMD 180 VR LPRA+I+++ E G+R S +R V DPV++HL A+LP A + + +F++ Sbjct: 99 VRFMLPRASIKEFLYEEGQRASAEPERIIGVDDPVVYHLALALLPSFARAG-ERNELFIE 157 Query: 181 SVTLALHTHLARHYGGQPLARNSGR-LAGWQQVRVRDYMLAHLGQRLTLAELAAQCGLSR 239 V LAL TH+ + + +G+ LA WQ R ++ + HL + +++A LA +CGLSR Sbjct: 158 QVMLALLTHVQDRFASTQVPVCTGKGLAPWQLRRAKELIAGHLAEGVSVARLAEECGLSR 217 Query: 240 AHFSRAFKLSFGLPPHAWLQRQRIALACQLLREDGKSMSVIALECGFSDQSHFSRVFKQV 299 ++F++AFK S G+ PH WL R R+ A +L+ + +S I + CGFSDQ HFSR+F ++ Sbjct: 218 SYFTKAFKCSTGVSPHEWLMRMRVDRAKELMLGSDEPLSQIGVACGFSDQPHFSRIFLRL 277 Query: 300 MGVGPMGWVR 309 G P W R Sbjct: 278 AGASPSTWRR 287