BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1835.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777892.1| transmembrane protein [Herbaspirillum serope...   199   1e-49
ref|YP_004501523.1| DoxX family protein [Serratia sp. AS12] >gi|...   155   2e-36
ref|ZP_06190709.1| DoxX family protein [Serratia odorifera 4Rx13...   154   4e-36
ref|ZP_08497665.1| DoxX protein [Enterobacter hormaechei ATCC 49...   154   6e-36
emb|CBK87538.1| Predicted membrane protein [Enterobacter cloacae...   152   1e-35

>ref|YP_003777892.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65984.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 121/140 (86%), Positives = 127/140 (90%)

Query: 1   MQAHHSARRTGWPVPPLDLGLLFLRVAGSFMLFYVHGLPKLMHYAHELTVIEDPFGLGPT 60
           MQ  H  +R   PVPPLDLGLLFLR+AGSFMLFYVHGLPKL+HYAHELTVIEDPFGLGPT
Sbjct: 1   MQTRHPTQRQALPVPPLDLGLLFLRLAGSFMLFYVHGLPKLLHYAHELTVIEDPFGLGPT 60

Query: 61  VSLWSAILAEALCPVLIALGLFTRLACLPIIGVLLVAMLAVHPGWSIAEGQFGWLLLVIF 120
           VSLW+AI AEALCP+LIA GLFTRLACLPIIGVLLVAMLAVHP WSIAEGQFGWLLLVIF
Sbjct: 61  VSLWAAIFAEALCPLLIAAGLFTRLACLPIIGVLLVAMLAVHPDWSIAEGQFGWLLLVIF 120

Query: 121 TAIALCGPGQWRLGQAAAQP 140
           TAIALCGPGQWR+G   AQP
Sbjct: 121 TAIALCGPGQWRVGHGMAQP 140


>ref|YP_004501523.1| DoxX family protein [Serratia sp. AS12]
 ref|YP_004506475.1| DoxX family protein [Serratia sp. AS9]
 gb|AEF46214.1| DoxX family protein [Serratia sp. AS9]
 gb|AEF51166.1| DoxX family protein [Serratia sp. AS12]
 gb|AEG28874.1| DoxX family protein [Serratia sp. AS13]
          Length = 142

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/120 (70%), Positives = 101/120 (84%)

Query: 15  PPLDLGLLFLRVAGSFMLFYVHGLPKLMHYAHELTVIEDPFGLGPTVSLWSAILAEALCP 74
           P +DLGL FLR+ GS +L +VHGLPK+ +++ ELT IEDPFG GP +SL  AILAE +CP
Sbjct: 11  PRIDLGLFFLRLTGSLLLLHVHGLPKVFNFSEELTRIEDPFGFGPYMSLLPAILAEVVCP 70

Query: 75  VLIALGLFTRLACLPIIGVLLVAMLAVHPGWSIAEGQFGWLLLVIFTAIALCGPGQWRLG 134
           VLI LG  TR+ACLPIIGVLLVAML VHPGWSIAEGQFGWLLL+IFT +A+ GPG+WR+G
Sbjct: 71  VLIILGFGTRIACLPIIGVLLVAMLFVHPGWSIAEGQFGWLLLIIFTTLAITGPGKWRIG 130


>ref|ZP_06190709.1| DoxX family protein [Serratia odorifera 4Rx13]
 gb|EFA16215.1| DoxX family protein [Serratia odorifera 4Rx13]
          Length = 142

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/120 (70%), Positives = 100/120 (83%)

Query: 15  PPLDLGLLFLRVAGSFMLFYVHGLPKLMHYAHELTVIEDPFGLGPTVSLWSAILAEALCP 74
           P +DLGL FLR+ GS +L +VHGLPK+ +++ ELT IEDPFG GP +SL  AILAE +CP
Sbjct: 11  PRIDLGLFFLRLTGSLLLLHVHGLPKVFNFSEELTRIEDPFGFGPYMSLLPAILAEVVCP 70

Query: 75  VLIALGLFTRLACLPIIGVLLVAMLAVHPGWSIAEGQFGWLLLVIFTAIALCGPGQWRLG 134
           V I LG  TR+ACLPIIGVLLVAML VHPGWSIAEGQFGWLLL+IFT +A+ GPG+WR+G
Sbjct: 71  VFIILGFGTRIACLPIIGVLLVAMLFVHPGWSIAEGQFGWLLLIIFTTLAITGPGKWRIG 130


>ref|ZP_08497665.1| DoxX protein [Enterobacter hormaechei ATCC 49162]
 gb|EGK61510.1| DoxX protein [Enterobacter hormaechei ATCC 49162]
          Length = 135

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/125 (66%), Positives = 100/125 (80%)

Query: 15  PPLDLGLLFLRVAGSFMLFYVHGLPKLMHYAHELTVIEDPFGLGPTVSLWSAILAEALCP 74
           P +D GL FLR+ GS +L YVHGLPK++H++ ELT IEDPFG GP  SL  AI+AE +CP
Sbjct: 8   PRVDPGLFFLRLTGSLLLLYVHGLPKVLHFSEELTRIEDPFGFGPYASLIPAIVAEVICP 67

Query: 75  VLIALGLFTRLACLPIIGVLLVAMLAVHPGWSIAEGQFGWLLLVIFTAIALCGPGQWRLG 134
           + I  G++TRLACLPII VLLVAMLAVHP WSIAEGQFGWLLL+IFT +AL GPGQWR+ 
Sbjct: 68  LFIIAGVYTRLACLPIIAVLLVAMLAVHPNWSIAEGQFGWLLLIIFTTLALTGPGQWRVQ 127

Query: 135 QAAAQ 139
           +   +
Sbjct: 128 RKTTE 132


>emb|CBK87538.1| Predicted membrane protein [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 135

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/125 (65%), Positives = 99/125 (79%)

Query: 15  PPLDLGLLFLRVAGSFMLFYVHGLPKLMHYAHELTVIEDPFGLGPTVSLWSAILAEALCP 74
           P +D GL FLR+ GS +L YVHGLPK++H++ ELT IEDPF  GP  SL  AI+AE +CP
Sbjct: 8   PRIDPGLFFLRLTGSLLLLYVHGLPKVLHFSEELTRIEDPFDFGPYASLIPAIVAEVICP 67

Query: 75  VLIALGLFTRLACLPIIGVLLVAMLAVHPGWSIAEGQFGWLLLVIFTAIALCGPGQWRLG 134
           + I  G++TRLACLPII VLLVAMLAVHP WSIAEGQFGWLLL+IFT +AL GPGQWR+ 
Sbjct: 68  LFIIAGIYTRLACLPIIAVLLVAMLAVHPNWSIAEGQFGWLLLIIFTTLALTGPGQWRVQ 127

Query: 135 QAAAQ 139
           +   +
Sbjct: 128 RKTTE 132