BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1832.p         (55 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_587444.1| hypothetical protein Rmet_5316 [Cupriavidus met...    60   1e-07
ref|YP_004680490.1| hypothetical protein CNE_2c02720 [Cupriavidu...    60   1e-07
ref|NP_518362.1| hypothetical protein RSc0241 [Ralstonia solanac...    60   2e-07
ref|YP_299042.1| hypothetical protein Reut_B4850 [Ralstonia eutr...    58   4e-07
ref|YP_003753780.1| hypothetical protein RPSI07_3170 [Ralstonia ...    57   1e-06

>ref|YP_587444.1| hypothetical protein Rmet_5316 [Cupriavidus metallidurans CH34]
 gb|ABF12175.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 91

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 41/46 (89%)

Query: 1  MSAYLISLGAGILIGVVYALFKVRSPAPPGIALIGLLGMVLAERLV 46
          M  YLISLGAGIL+G++YAL +VRSPAPP +ALIGLLGM++ E++V
Sbjct: 1  MKLYLISLGAGILVGIIYALMQVRSPAPPAVALIGLLGMLIGEQVV 46


>ref|YP_004680490.1| hypothetical protein CNE_2c02720 [Cupriavidus necator N-1]
 gb|AEI79258.1| hypothetical protein DUF1427 [Cupriavidus necator N-1]
          Length = 97

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/46 (71%), Positives = 41/46 (89%)

Query: 1  MSAYLISLGAGILIGVVYALFKVRSPAPPGIALIGLLGMVLAERLV 46
          M  YLISLGAGIL+G++YAL +VRSPAPP IALIGLLGM++ E++V
Sbjct: 1  MKLYLISLGAGILVGIIYALMQVRSPAPPAIALIGLLGMLIGEQVV 46


>ref|NP_518362.1| hypothetical protein RSc0241 [Ralstonia solanacearum GMI1000]
 emb|CAD13769.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 96

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 1  MSAYLISLGAGILIGVVYALFKVRSPAPPGIALIGLLGMVLAERLVNGLGPLLG 54
          M  YLISLGAGIL+G++YAL  VRSPAPP IAL+GLLGM++ E++V     LL 
Sbjct: 1  MKPYLISLGAGILVGIIYALLHVRSPAPPTIALVGLLGMLIGEQIVPAAQRLLA 54


>ref|YP_299042.1| hypothetical protein Reut_B4850 [Ralstonia eutropha JMP134]
 gb|AAZ64198.1| Protein of unknown function DUF1427 [Ralstonia eutropha JMP134]
          Length = 97

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 40/46 (86%)

Query: 1  MSAYLISLGAGILIGVVYALFKVRSPAPPGIALIGLLGMVLAERLV 46
          M  Y++SL AGIL+G++YAL +VRSPAPP IALIGLLGM++ E++V
Sbjct: 1  MKVYIVSLAAGILVGIIYALLQVRSPAPPAIALIGLLGMLIGEQVV 46


>ref|YP_003753780.1| hypothetical protein RPSI07_3170 [Ralstonia solanacearum PSI07]
 emb|CBJ52522.1| conserved protein of unknown function [Ralstonia solanacearum
          PSI07]
          Length = 97

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 39/46 (84%)

Query: 1  MSAYLISLGAGILIGVVYALFKVRSPAPPGIALIGLLGMVLAERLV 46
          M  YLISL AG+L+G++YAL  VRSPAPP IAL+GLLGM++ E++V
Sbjct: 1  MKPYLISLSAGVLVGIIYALLHVRSPAPPAIALVGLLGMLIGEQIV 46