BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1831.p         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777896.1| transmembrane protein [Herbaspirillum serope...   103   7e-21
ref|YP_001796821.1| hypothetical protein RALTA_B0389 [Cupriavidu...    99   3e-19
ref|NP_518362.1| hypothetical protein RSc0241 [Ralstonia solanac...    97   9e-19
emb|CBJ39452.1| conserved protein of unknown function [Ralstonia...    96   2e-18
ref|YP_587444.1| hypothetical protein Rmet_5316 [Cupriavidus met...    96   2e-18

>ref|YP_003777896.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65988.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 80

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 72/78 (92%), Positives = 77/78 (98%)

Query: 1  MKPYLISLLMGLLAGLIYAALHVQSPAPPIIALLGLLGMLIGEQLVPIVRRKLAGEPLSA 60
          MKPYLISL MG+LAGLIYAALHVQSPAPPIIALLGLLGMLIGEQ+VPIVRRKLAGEPL+A
Sbjct: 1  MKPYLISLFMGILAGLIYAALHVQSPAPPIIALLGLLGMLIGEQVVPIVRRKLAGEPLTA 60

Query: 61 AWFHRECMPKITGTPPPD 78
          +WFHRECMPKITGTPPP+
Sbjct: 61 SWFHRECMPKITGTPPPE 78


>ref|YP_001796821.1| hypothetical protein RALTA_B0389 [Cupriavidus taiwanensis LMG
          19424]
 emb|CAP63584.1| conserved hypothetical protein (DUF1427); putative exported
          protein; putative membrane protein [Cupriavidus
          taiwanensis LMG 19424]
          Length = 92

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/77 (70%), Positives = 67/77 (87%)

Query: 1  MKPYLISLLMGLLAGLIYAALHVQSPAPPIIALLGLLGMLIGEQLVPIVRRKLAGEPLSA 60
          MK YL+SL  G+L G+IYA + V+SPAPP++AL+GLLGMLIGEQ+VP ++R LAGEP++A
Sbjct: 1  MKLYLVSLAAGILVGIIYALMQVRSPAPPVVALVGLLGMLIGEQVVPPIKRMLAGEPVTA 60

Query: 61 AWFHRECMPKITGTPPP 77
          AWFH ECMPKITGTP P
Sbjct: 61 AWFHSECMPKITGTPGP 77


>ref|NP_518362.1| hypothetical protein RSc0241 [Ralstonia solanacearum GMI1000]
 emb|CAD13769.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 96

 Score = 97.1 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/77 (72%), Positives = 64/77 (83%)

Query: 1  MKPYLISLLMGLLAGLIYAALHVQSPAPPIIALLGLLGMLIGEQLVPIVRRKLAGEPLSA 60
          MKPYLISL  G+L G+IYA LHV+SPAPP IAL+GLLGMLIGEQ+VP  +R LAGEPL+ 
Sbjct: 1  MKPYLISLGAGILVGIIYALLHVRSPAPPTIALVGLLGMLIGEQIVPAAQRLLAGEPLTV 60

Query: 61 AWFHRECMPKITGTPPP 77
          AWF  EC+PKITG P P
Sbjct: 61 AWFRHECVPKITGAPSP 77


>emb|CBJ39452.1| conserved protein of unknown function [Ralstonia solanacearum
          CMR15]
          Length = 97

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/75 (73%), Positives = 64/75 (85%)

Query: 1  MKPYLISLLMGLLAGLIYAALHVQSPAPPIIALLGLLGMLIGEQLVPIVRRKLAGEPLSA 60
          MKPYLISL +G+L G+IYA LHV+SPAPP IAL+GLLGMLIGEQ+VP  +R LAGEPL+ 
Sbjct: 1  MKPYLISLSVGILVGIIYALLHVRSPAPPTIALIGLLGMLIGEQIVPAAQRLLAGEPLTV 60

Query: 61 AWFHRECMPKITGTP 75
          AWF  EC+PKITG P
Sbjct: 61 AWFRHECVPKITGAP 75


>ref|YP_587444.1| hypothetical protein Rmet_5316 [Cupriavidus metallidurans CH34]
 gb|ABF12175.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 91

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/77 (68%), Positives = 66/77 (85%)

Query: 1  MKPYLISLLMGLLAGLIYAALHVQSPAPPIIALLGLLGMLIGEQLVPIVRRKLAGEPLSA 60
          MK YLISL  G+L G+IYA + V+SPAPP +AL+GLLGMLIGEQ+VP ++R +AGEP++ 
Sbjct: 1  MKLYLISLGAGILVGIIYALMQVRSPAPPAVALIGLLGMLIGEQVVPPIKRMIAGEPVTV 60

Query: 61 AWFHRECMPKITGTPPP 77
          AWFH+ECMPKITGTP P
Sbjct: 61 AWFHQECMPKITGTPGP 77