BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1830.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777897.1| two component response regulator protein [He...   154   6e-36
ref|ZP_06190712.1| transcriptional regulatory protein [Serratia ...    83   1e-14
ref|YP_001354109.1| hypothetical protein mma_2419 [Janthinobacte...    80   9e-14
ref|YP_004501528.1| response regulator receiver protein [Serrati...    80   1e-13
ref|YP_004115800.1| response regulator receiver protein [Pantoea...    80   1e-13

>ref|YP_003777897.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65989.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 125

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 91/124 (73%), Positives = 101/124 (81%)

Query: 9   PPSHRPIAVIDDDLGVRAALCNLLDSAGHRHCSFDGGEDFLTSTCLPVAACAIVDLNLPG 68
           P SH  IAVIDDD GVRAALCNLLDSAG+R C F  GE+FL S C+PVA CAI+DL L  
Sbjct: 2   PSSHGAIAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLAC 61

Query: 69  MSGFELAEQLRSLRPDLPVLFISAQVTPLQRQRATAMGMALLVKPVDADTLLVLLTSTLL 128
           MSGFELAE+L   RPDLP+LFISAQVTP Q+QRA+A+G ALL KPVDADTLL LLT+ LL
Sbjct: 62  MSGFELAERLALARPDLPLLFISAQVTPRQQQRASALGGALLAKPVDADTLLALLTACLL 121

Query: 129 YGPP 132
           YG P
Sbjct: 122 YGRP 125


>ref|ZP_06190712.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gb|EFA16218.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 127

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 2/115 (1%)

Query: 15  IAVIDDDLGVRAALCNLLDSAGHRHCSFDGGEDFLTS-TCLPVAACAIVDLNLPGMSGFE 73
           IA++DD+  VR+ L NLL S G+  C+F+  E FL   T L  A+  I+D+ L GM GFE
Sbjct: 7   IAIVDDERSVRSGLINLLQSDGYTTCAFESAEAFLNEKTALSDASLVIIDIKLKGMGGFE 66

Query: 74  LAEQLRSLRPDLPVLFISAQVTPLQRQRATAMG-MALLVKPVDADTLLVLLTSTL 127
           L E++++     PV+FIS       ++ A  +G +A L KP+D DTLL L+   L
Sbjct: 67  LYEKIKTYATPPPVIFISGHGDENMQRFALKLGAVAFLRKPIDIDTLLGLIQHAL 121


>ref|YP_001354109.1| hypothetical protein mma_2419 [Janthinobacterium sp. Marseille]
 gb|ABR91296.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 128

 Score = 80.5 bits (197), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 66/118 (55%)

Query: 15  IAVIDDDLGVRAALCNLLDSAGHRHCSFDGGEDFLTSTCLPVAACAIVDLNLPGMSGFEL 74
           IAV++DD G+RAA+  +L++ G     F   E FL S  +    C ++DL LPG+SGFEL
Sbjct: 10  IAVVEDDNGLRAAILRMLNACGWNPVGFASAEGFLESAVVESIDCLVLDLYLPGISGFEL 69

Query: 75  AEQLRSLRPDLPVLFISAQVTPLQRQRATAMGMALLVKPVDADTLLVLLTSTLLYGPP 132
            EQ+++   D+P++FI+AQ     R R   +G   L KP    +L   +   L +  P
Sbjct: 70  LEQIKAKGMDIPIIFITAQDDEKIRVRVEGVGKLYLPKPFTGQSLASKVKDCLKHAGP 127


>ref|YP_004501528.1| response regulator receiver protein [Serratia sp. AS12]
 ref|YP_004506480.1| response regulator receiver protein [Serratia sp. AS9]
 gb|AEF46219.1| response regulator receiver protein [Serratia sp. AS9]
 gb|AEF51171.1| response regulator receiver protein [Serratia sp. AS12]
 gb|AEG28879.1| response regulator receiver protein [Serratia sp. AS13]
          Length = 127

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 15  IAVIDDDLGVRAALCNLLDSAGHRHCSFDGGEDFLTS-TCLPVAACAIVDLNLPGMSGFE 73
           IA++DD+  VR+ L NLL S G+  C+F+  E FL   T L  A+  I+D+ L GM GFE
Sbjct: 7   IAIVDDERSVRSGLINLLQSDGYTTCAFESAEAFLNEKTALSDASLVIIDIKLKGMGGFE 66

Query: 74  LAEQLRSLRPDLPVLFISAQVTPLQRQRATAMG-MALLVKPVDADTLLVLLTSTL 127
             E++++     PV+FIS       ++ A  +G +A L KP+D D LL L+   L
Sbjct: 67  FYEKIKTYATPPPVIFISGHGDENMQRLALKLGAVAFLRKPIDIDALLGLIQHAL 121


>ref|YP_004115800.1| response regulator receiver protein [Pantoea sp. At-9b]
 gb|ADU69244.1| response regulator receiver protein [Pantoea sp. At-9b]
          Length = 127

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 8   TPPSHRPIAVIDDDLGVRAALCNLLDSAGHRHCSFDGGEDFLTS-TCLPVAACAIVDLNL 66
           T P H  I ++DD+  VR  L NLL S G+    ++ GE  L     L  AA  I+D+ L
Sbjct: 2   TLPQH--IVIVDDERSVRNGLSNLLHSDGYTTSLYESGEALLCDDNALTGAAMLIIDVRL 59

Query: 67  PGMSGFELAEQLRSLRPDLPVLFISAQVTPLQRQRATAMG-MALLVKPVDADTLLVLLTS 125
            GMSGFEL   L+     LPV+FISA+     +  A A+G +  L KP+D DTLL ++ +
Sbjct: 60  KGMSGFELFAVLQQQAVTLPVIFISAEQEEAVQWYAIALGAVTFLRKPIDVDTLLTIIRN 119

Query: 126 TLLYGPP 132
            L +G P
Sbjct: 120 ELSHGEP 126