BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1829.p (452 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777898.1| PAS/PAC HisKA ATPase_c domains containing se... 633 e-179 ref|ZP_06190713.1| PAS sensor protein [Serratia odorifera 4Rx13]... 383 e-104 ref|YP_004501529.1| multi-sensor signal transduction multi-kinas... 377 e-102 ref|ZP_08497659.1| sensor histidine kinase [Enterobacter hormaec... 371 e-100 ref|YP_003611230.1| PAS sensor protein [Enterobacter cloacae sub... 369 e-100 >ref|YP_003777898.1| PAS/PAC HisKA ATPase_c domains containing sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65990.1| PAS/PAC HisKA ATPase_c domains containing sensor signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 524 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 337/431 (78%), Positives = 374/431 (86%) Query: 22 LTLRLSHRGQARGELLLYYDAPPAAAMTRCAHHLAAHAAVALANAADHAQALLEKEQLLC 81 L L L H QA G L L ++A A A +AAVALANA HA L E EQL C Sbjct: 94 LALPLMHGQQALGTLYLQWEAALPERTRALAAQFADYAAVALANALAHAHLLQENEQLTC 153 Query: 82 AERELRTSQELLKQGERFNHAGSMRYLVREDLMFCSDELCRIYGLPPGRNCITYDEFASI 141 AE+ELRTSQELLKQGERFNH GSMRYLVREDLM+CSDELCRIYGL PGRNCITY+EFA+I Sbjct: 154 AEKELRTSQELLKQGERFNHTGSMRYLVREDLMYCSDELCRIYGLAPGRNCITYEEFAAI 213 Query: 142 MHPDDRQEVIETVNAAVAMGGTIRVEHRICRQDTGEVRYLSGIGKPVWVDGTFTEYVGTA 201 MHPDDRQEV+ETVNAAVAMGGTIRVEHRICRQDTGEVRYLSGIGKP+W DGTFTEYVGTA Sbjct: 214 MHPDDRQEVVETVNAAVAMGGTIRVEHRICRQDTGEVRYLSGIGKPIWRDGTFTEYVGTA 273 Query: 202 TDITVRRQAEYAIRAAQVDMERVSRANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNR 261 TDITVRRQ EYAIRAAQ+DMERVSRANTVGQLTASIAHEINQPLMSIV+NAGASLRWL+R Sbjct: 274 TDITVRRQNEYAIRAAQIDMERVSRANTVGQLTASIAHEINQPLMSIVANAGASLRWLDR 333 Query: 262 PVPELEHARAGLRDIISEGQRAGGIISSLQNLTRNRAPQFERLNLAALIRHTLTLSRSEL 321 PVP+LEHAR GLRDII+EGQRAGGIIS L++LTRN AP ER+NL A+IRH LTLSRSEL Sbjct: 334 PVPDLEHARTGLRDIIAEGQRAGGIISGLRDLTRNAAPVCERVNLHAVIRHILTLSRSEL 393 Query: 322 EQREVHLSLSLPPAEVHVLGDTVQLQQVLLNLVVNAIDAMAAVPENARTLNIGVSCCNEQ 381 E+REV L LSL PA+ VLGD VQLQQV+LNLVVNAI+AM+++PE+AR L+I S C+EQ Sbjct: 394 ERREVSLLLSLTPADAFVLGDQVQLQQVMLNLVVNAIEAMSSMPEHARVLSITASSCDEQ 453 Query: 382 RVKVEIQDSGEGIAADAMPHIFDAFYTTKENGMGMGLAICRSIIETHRGRLRVEAAQPQG 441 R++V++QDSGEGIA +AM +FDAFYTTK++GMGMGLAICRSIIE HRGRLRV AAQP G Sbjct: 454 RIEVKVQDSGEGIAPEAMRRVFDAFYTTKDSGMGMGLAICRSIIENHRGRLRVAAAQPHG 513 Query: 442 TVFSFDLPRVP 452 +FSFDLPRVP Sbjct: 514 ALFSFDLPRVP 524 >ref|ZP_06190713.1| PAS sensor protein [Serratia odorifera 4Rx13] gb|EFA16219.1| PAS sensor protein [Serratia odorifera 4Rx13] Length = 1827 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 208/404 (51%), Positives = 268/404 (66%), Gaps = 1/404 (0%) Query: 46 AAMTRCAHHLAAHAAVALANAADHAQALLEKEQLLCAERELRTSQELLKQGERFNHAGSM 105 A ++ + L AHAAV+L A +A+ L E Q E+ELR+SQ L GE+ +H GS Sbjct: 1414 AEHSKVVNLLGAHAAVSLETARLYAELLEENIQRRRVEKELRSSQTSLMLGEQISHTGSW 1473 Query: 106 RYLVREDLMFCSDELCRIYGLPPGRNCITYDEFASIMHPDDRQEVIETVNAAVAMGGTIR 165 R+ + +DLMF S+E RI GLP + I+ EF + +HPDD V V V G +R Sbjct: 1474 RWELEQDLMFMSEEYARILGLPEKQKMISMAEFLTFVHPDDYARVSTVVTDGVRDGLPLR 1533 Query: 166 VEHRICRQDTGEVRYLSGIGKPVWVDGTFTEYVGTATDITVRRQAEYAIRAAQVDMERVS 225 E RI D G RY+ GIG PV V EY GT TDIT +RQ E A+R AQ ++ RVS Sbjct: 1534 AEFRIMSAD-GVCRYILGIGNPVGVGTEVYEYYGTITDITAQRQTEDAVRVAQAELARVS 1592 Query: 226 RANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPELEHARAGLRDIISEGQRAGG 285 RA TVGQLT+SIAHEINQPLMSIVSNAGASLRWLN ++ R GL +II+EGQRAG Sbjct: 1593 RATTVGQLTSSIAHEINQPLMSIVSNAGASLRWLNHDPVRHDNIRTGLEEIIAEGQRAGE 1652 Query: 286 IISSLQNLTRNRAPQFERLNLAALIRHTLTLSRSELEQREVHLSLSLPPAEVHVLGDTVQ 345 II SLQ LTR + P F R++L L+RH +TLSRSE+EQR V + L A+ + GD+VQ Sbjct: 1653 IIRSLQTLTRKQEPVFSRIDLHYLVRHIMTLSRSEIEQRRVVVDYELKAADSFIFGDSVQ 1712 Query: 346 LQQVLLNLVVNAIDAMAAVPENARTLNIGVSCCNEQRVKVEIQDSGEGIAADAMPHIFDA 405 +QQVL+NLV+NAI+A++ V + RTL I ++ RV++ I D+G G+ D M +FD+ Sbjct: 1713 IQQVLINLVMNAIEALSEVSDRTRTLRITTLNPDDGRVELRIMDNGVGLDPDVMERVFDS 1772 Query: 406 FYTTKENGMGMGLAICRSIIETHRGRLRVEAAQPQGTVFSFDLP 449 FYTTK GMGMGL I +IIE HRG L+ +AA+P G+ FSF +P Sbjct: 1773 FYTTKAQGMGMGLTISHAIIERHRGVLKAQAAEPCGSCFSFVVP 1816 >ref|YP_004501529.1| multi-sensor signal transduction multi-kinase [Serratia sp. AS12] ref|YP_004506481.1| multi-sensor signal transduction multi-kinase [Serratia sp. AS9] gb|AEF46220.1| multi-sensor signal transduction multi-kinase [Serratia sp. AS9] gb|AEF51172.1| multi-sensor signal transduction multi-kinase [Serratia sp. AS12] gb|AEG28880.1| multi-sensor signal transduction multi-kinase [Serratia sp. AS13] Length = 1868 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 205/406 (50%), Positives = 266/406 (65%), Gaps = 1/406 (0%) Query: 46 AAMTRCAHHLAAHAAVALANAADHAQALLEKEQLLCAERELRTSQELLKQGERFNHAGSM 105 A ++ + L AHAAV+L A +A+ L E Q E+ELR SQ L GE+ +H GS Sbjct: 1455 AEHSKVVNLLGAHAAVSLETARLYAELLEENIQRRRVEKELRASQTSLMLGEQISHTGSW 1514 Query: 106 RYLVREDLMFCSDELCRIYGLPPGRNCITYDEFASIMHPDDRQEVIETVNAAVAMGGTIR 165 R+ + +DLMF S+E RI GLP + I+ EF + +HPDD V V V G +R Sbjct: 1515 RWELEQDLMFMSEEYARILGLPEKQKMISMAEFLTFVHPDDYARVSTVVTDGVRDGLPLR 1574 Query: 166 VEHRICRQDTGEVRYLSGIGKPVWVDGTFTEYVGTATDITVRRQAEYAIRAAQVDMERVS 225 E RI D G RY+ GIG PV V EY GT TDIT +RQ E A+R AQ ++ RVS Sbjct: 1575 AEFRIMSAD-GVCRYILGIGNPVGVGTEVYEYYGTITDITAQRQTEDAVRVAQAELARVS 1633 Query: 226 RANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPELEHARAGLRDIISEGQRAGG 285 RA TVGQLT+SIAHEINQPLMSIVSNAGASLRWLN ++ R GL +II+EGQRAG Sbjct: 1634 RATTVGQLTSSIAHEINQPLMSIVSNAGASLRWLNHDPVRHDNIRTGLEEIIAEGQRAGE 1693 Query: 286 IISSLQNLTRNRAPQFERLNLAALIRHTLTLSRSELEQREVHLSLSLPPAEVHVLGDTVQ 345 II SLQ LTR + P F R++L L+RH +TLSRSE+EQR V + A+ + GD+VQ Sbjct: 1694 IIRSLQTLTRKQEPVFSRIDLHYLVRHIMTLSRSEIEQRRVAVEYEPKAADSFIFGDSVQ 1753 Query: 346 LQQVLLNLVVNAIDAMAAVPENARTLNIGVSCCNEQRVKVEIQDSGEGIAADAMPHIFDA 405 +QQVL+NLV+NAI+A++ V + RTL I ++ +V++ I D+G G+ + M +FD+ Sbjct: 1754 IQQVLINLVMNAIEALSEVSDRTRTLRITTLNPDDGKVELRIMDNGIGLDPEVMERVFDS 1813 Query: 406 FYTTKENGMGMGLAICRSIIETHRGRLRVEAAQPQGTVFSFDLPRV 451 FYTTK GMGMGL I +IIE HRG L+ +A +P G+ FSF +P V Sbjct: 1814 FYTTKAQGMGMGLTISLAIIERHRGALKAQAVEPYGSCFSFVVPTV 1859 >ref|ZP_08497659.1| sensor histidine kinase [Enterobacter hormaechei ATCC 49162] gb|EGK61504.1| sensor histidine kinase [Enterobacter hormaechei ATCC 49162] Length = 1861 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 206/404 (50%), Positives = 261/404 (64%), Gaps = 1/404 (0%) Query: 46 AAMTRCAHHLAAHAAVALANAADHAQALLEKEQLLCAERELRTSQELLKQGERFNHAGSM 105 A +R L A AAV+L A +A+ L E Q E+ELR SQ L GE+ +H GS Sbjct: 1453 AEHSRVVSLLGAQAAVSLETARLYAELLAENIQRRRVEKELRASQTSLMLGEQISHTGSW 1512 Query: 106 RYLVREDLMFCSDELCRIYGLPPGRNCITYDEFASIMHPDDRQEVIETVNAAVAMGGTIR 165 R+ + +DLMF S+E RI GLP + I+ EF + +H DD + VN +V G ++R Sbjct: 1513 RWELVQDLMFMSEEYARILGLPEQQKMISMAEFLTFVHEDDYGRISTLVNQSVRDGLSMR 1572 Query: 166 VEHRICRQDTGEVRYLSGIGKPVWVDGTFTEYVGTATDITVRRQAEYAIRAAQVDMERVS 225 E RI R D G VRY+ GIG PV V EY G TDIT +R AE A+R AQ D+ RVS Sbjct: 1573 AEFRIIRTD-GSVRYILGIGDPVGVGSEVNEYYGIITDITSQRAAEDAMRVAQADLARVS 1631 Query: 226 RANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPELEHARAGLRDIISEGQRAGG 285 RA TVGQLT+SIAHEINQPLMSIVSNAGASLRWLNR L+ R GL +I +EG+RAG Sbjct: 1632 RATTVGQLTSSIAHEINQPLMSIVSNAGASLRWLNRDPARLDKVREGLEEIAAEGERAGE 1691 Query: 286 IISSLQNLTRNRAPQFERLNLAALIRHTLTLSRSELEQREVHLSLSLPPAEVHVLGDTVQ 345 II S+Q+LTR + P F R++L LI H + LSRSELE R + + L ++GD+VQ Sbjct: 1692 IIRSIQSLTRKQDPTFTRIDLHFLIHHIIMLSRSELELRHISVDYLLNADNSFIIGDSVQ 1751 Query: 346 LQQVLLNLVVNAIDAMAAVPENARTLNIGVSCCNEQRVKVEIQDSGEGIAADAMPHIFDA 405 +QQVLLNLV+NA++AMA V + ++ I + C E +V EI D+G GI + IFD+ Sbjct: 1752 IQQVLLNLVMNAMEAMAEVTDRPCSITISTANCAEGKVIFEIADTGSGIEPEHTERIFDS 1811 Query: 406 FYTTKENGMGMGLAICRSIIETHRGRLRVEAAQPQGTVFSFDLP 449 FY+TK GMGMGL I SIIE HRG+L +P GTVF+F LP Sbjct: 1812 FYSTKAQGMGMGLTISASIIERHRGKLSARRREPYGTVFTFALP 1855 >ref|YP_003611230.1| PAS sensor protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gb|ADF60281.1| PAS sensor protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1860 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 206/404 (50%), Positives = 261/404 (64%), Gaps = 2/404 (0%) Query: 46 AAMTRCAHHLAAHAAVALANAADHAQALLEKEQLLCAERELRTSQELLKQGERFNHAGSM 105 A +R L A AAV+L A +A+ L E Q E+ELR+SQ L GE+ +H GS Sbjct: 1453 AEHSRVVSLLGAQAAVSLETARLYAELLAENIQRRRVEKELRSSQTSLMLGEQISHTGSW 1512 Query: 106 RYLVREDLMFCSDELCRIYGLPPGRNCITYDEFASIMHPDDRQEVIETVNAAVAMGGTIR 165 R+ + +DLMF S+E RI GLP + I+ EF + +H DD + V +V G ++R Sbjct: 1513 RWELEQDLMFISEEYARILGLPEQQKKISMAEFLTFVHQDDYARISTIVTQSVREGLSMR 1572 Query: 166 VEHRICRQDTGEVRYLSGIGKPVWVDGTFTEYVGTATDITVRRQAEYAIRAAQVDMERVS 225 E RI R D G RY+ GIG PV V EY G TDIT +R AE A+R AQ D+ RVS Sbjct: 1573 AEFRINRTD-GSTRYILGIGDPVGVGSEVNEYYGIITDITSQRAAEDAMRVAQADLARVS 1631 Query: 226 RANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPELEHARAGLRDIISEGQRAGG 285 RA TVGQLT+SIAHEINQPLMSIVSNAGASLRWLNR L+ R GL +I +EG RAG Sbjct: 1632 RATTVGQLTSSIAHEINQPLMSIVSNAGASLRWLNREPARLDKVREGLEEIAAEGARAGE 1691 Query: 286 IISSLQNLTRNRAPQFERLNLAALIRHTLTLSRSELEQREVHLSLSLPPAEVHVLGDTVQ 345 II S+Q+LTR + P F R++L L+ H + LSRSELEQR + + L + + GD+VQ Sbjct: 1692 IIRSIQSLTRKQDPTFSRIDLHYLVHHIIALSRSELEQRHISVDYLLQAHDSFITGDSVQ 1751 Query: 346 LQQVLLNLVVNAIDAMAAVPENARTLNIGVSCCNEQRVKVEIQDSGEGIAADAMPHIFDA 405 +QQVLLNLV+NA++AMA V + + T+ I S E RV VEI D+G GI + + IFD+ Sbjct: 1752 IQQVLLNLVMNAVEAMAEVKDRSCTITISTSNA-EGRVLVEIADTGSGIEPERLEKIFDS 1810 Query: 406 FYTTKENGMGMGLAICRSIIETHRGRLRVEAAQPQGTVFSFDLP 449 FY+TK GMGMGL I SIIE H G+L +P GTVF+F LP Sbjct: 1811 FYSTKAQGMGMGLTISASIIERHCGKLSARRREPHGTVFAFTLP 1854