BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1828.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777899.1| AraC family transcription regulator protein ... 439 e-121 ref|ZP_06845546.1| transcriptional regulator, AraC family [Burkh... 282 5e-74 ref|ZP_06687759.1| AraC family transcriptional regulator [Achrom... 281 8e-74 ref|YP_552960.1| AraC family transcriptional regulator [Burkhold... 280 3e-73 ref|YP_001889835.1| AraC family transcriptional regulator [Burkh... 271 1e-70 >ref|YP_003777899.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65991.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 224/299 (74%), Positives = 256/299 (85%), Gaps = 1/299 (0%) Query: 26 MTAQVPLATAPARSDSLGCSSTALKQSQELQGSQFSFYRKRVEGREVSQVYTPASDRGFL 85 M A PL+T RSDSLGCS+ +LK SQELQGS FSFYRKRVEG E++QV TPASDRGFL Sbjct: 1 MAALAPLSTIAERSDSLGCSARSLKHSQELQGSDFSFYRKRVEGEEIAQVVTPASDRGFL 60 Query: 86 VGISMASQHRRSIFRGRQGAQFEFGRGAVYIRDFSEDYRADLQTPFDFLLVELPLSWFAT 145 +GIS+A HRRSIFRGRQGA+FEF GA+Y RDFSEDYRADLQ PFDFLLVE+PLSWFA Sbjct: 61 LGISLAP-HRRSIFRGRQGAKFEFAPGAIYTRDFSEDYRADLQAPFDFLLVEMPLSWFAA 119 Query: 146 VNEDLRGRKASGLATITGHDDPVLAHLAAALAPALAQPDADNHLFVDQLGLAMGTHLLQR 205 +++LR R+ +GLAT+TG DPVL HLA AL PALA PD D+ LF+DQLG+A+GTHLLQR Sbjct: 120 ASDELRRRRVAGLATVTGQHDPVLQHLAYALTPALANPDPDSRLFIDQLGVALGTHLLQR 179 Query: 206 YGGASLSAPRHVRLSRLHEERAKQMLLQKNRDQVSIPEIARECNMSASYFLRAFKASTGH 265 YGGA R LSRLHEERAK MLL+K + VSIPEIARECNMSASYFLRAFKASTGH Sbjct: 180 YGGAPAPTLRTAPLSRLHEERAKMMLLEKVKGNVSIPEIARECNMSASYFLRAFKASTGH 239 Query: 266 TPHQWLLLQRVDMAREYLRHSGLSLAEIAVACDFYDQSHFSRVFSQIVGSSPGAWRRRL 324 TPHQWL++QRV+MA++YLR + L+LAEIA+ACDFYDQSHFSRVFSQ+VGS+PGAWRRRL Sbjct: 240 TPHQWLMVQRVEMAQQYLRSTQLTLAEIALACDFYDQSHFSRVFSQVVGSTPGAWRRRL 298 >ref|ZP_06845546.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] gb|EFG66845.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] Length = 304 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 146/293 (49%), Positives = 192/293 (65%), Gaps = 1/293 (0%) Query: 34 TAPARSDSLGCSSTALKQSQELQGSQFSFYRKRVEGREVSQVYTPASDRGFLVGISMASQ 93 TA + DSLGC + L + EL+ F+FYRK + S+V TPASDRG L+G+S+++ Sbjct: 11 TAARKKDSLGCLANQLHKDIELEAGDFTFYRKCRRQEKTSEVATPASDRGVLIGVSLSAG 70 Query: 94 HRRSIFRGRQGAQFEFGRGAVYIRDFSEDYRADLQTPFDFLLVELPLSWFATVNEDLRGR 153 HRR I G + A EF + +VYIR+F EDYRADL FDF+LVE ++ + G Sbjct: 71 HRRRIISGNRSAMHEFDKDSVYIRNFEEDYRADLHGAFDFVLVEFSRAFITNTGYERSGT 130 Query: 154 KASGLATITGHDDPVLAHLAAALAPALAQPDADNHLFVDQLGLAMGTHLLQRYGGA-SLS 212 +G + G DP+ HLA LA AL + + LF++QLG+ +GTHL+ YGGA + S Sbjct: 131 HMTGFSAQPGGKDPIFGHLAQVLALALDRESEASPLFIEQLGVTIGTHLVDHYGGAPAQS 190 Query: 213 APRHVRLSRLHEERAKQMLLQKNRDQVSIPEIARECNMSASYFLRAFKASTGHTPHQWLL 272 RLS LHE RAK MLL K +D VS+ EIA CN+S SYF+RAF+ +T TPHQWLL Sbjct: 191 VKPGRRLSGLHEARAKDMLLAKTQDNVSLEEIANACNLSRSYFIRAFRETTNRTPHQWLL 250 Query: 273 LQRVDMAREYLRHSGLSLAEIAVACDFYDQSHFSRVFSQIVGSSPGAWRRRLG 325 QR++ AR LR S SL+EIA+AC F DQSHF+R F+Q+VG+ PG+WRR G Sbjct: 251 EQRIERARHLLRSSDASLSEIAIACGFSDQSHFTRTFTQLVGTPPGSWRRLAG 303 >ref|ZP_06687759.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75204.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 312 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 150/307 (48%), Positives = 199/307 (64%), Gaps = 6/307 (1%) Query: 21 STRSPMTAQVPLATAPAR-SDSLGCSSTALKQSQELQGSQFSFYRKRVEGREVSQVYTPA 79 S P +A + A APAR +D+LGCS+T L SQ +G +FYRK + V TPA Sbjct: 4 SAPGPESAHLS-AVAPARATDALGCSATKLVTSQYFEGGGLTFYRKSTDNERFGNVETPA 62 Query: 80 SDRGFLVGISMASQHRRSIFRGRQGAQFEFGRGAVYIRDFSEDYRADLQTPFDFLLVELP 139 SDRG+LVG++M HRR I +G +F +G+VYIRDF++DYRADLQ FDF+L+ELP Sbjct: 63 SDRGYLVGVAMQGGHRRRILQGNHATTHDFDKGSVYIRDFTDDYRADLQGGFDFVLIELP 122 Query: 140 LSWFATVNEDLRGRKASGLATITGHDDPVLAHLAAALAPALAQPDADNHLFVDQLGLAMG 199 ++ VN++ G + S L TG DPVLA+L+ LA LAQP N+LFV L LA+G Sbjct: 123 RAFIERVNDEKGGPRVSSLLPRTGEGDPVLANLSQVLANVLAQPAPSNNLFVQHLSLAIG 182 Query: 200 THLLQRYGGASLS----APRHVRLSRLHEERAKQMLLQKNRDQVSIPEIARECNMSASYF 255 HLL YG + S + LSR E RAK ML+ R+ +SI +IA CN+S SYF Sbjct: 183 AHLLSNYGAGATSGWADSGGARVLSRKLEARAKDMLMSTLREDLSIADIADACNLSRSYF 242 Query: 256 LRAFKASTGHTPHQWLLLQRVDMAREYLRHSGLSLAEIAVACDFYDQSHFSRVFSQIVGS 315 ++AF+ + G TPH+WLL QRV A+E LR G S+ +IA+ C F DQ+H +RVF+ +VG Sbjct: 243 IKAFRQTVGTTPHRWLLEQRVQKAQELLRVPGQSITDIALLCGFADQAHLTRVFTSVVGV 302 Query: 316 SPGAWRR 322 SPGAWR+ Sbjct: 303 SPGAWRK 309 >ref|YP_552960.1| AraC family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE33610.1| transcriptional regulator, AraC family [Burkholderia xenovorans LB400] Length = 304 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 145/290 (50%), Positives = 191/290 (65%), Gaps = 1/290 (0%) Query: 34 TAPARSDSLGCSSTALKQSQELQGSQFSFYRKRVEGREVSQVYTPASDRGFLVGISMASQ 93 TA + DSLGC S L + EL+ F+FYRK + S+V TPASDRG L+G+S+++ Sbjct: 11 TAARKKDSLGCLSNQLHKDIELEAGDFTFYRKCRRQEKTSEVATPASDRGVLIGVSLSAG 70 Query: 94 HRRSIFRGRQGAQFEFGRGAVYIRDFSEDYRADLQTPFDFLLVELPLSWFATVNEDLRGR 153 HRR I G + A EF + +VYIR+F EDYRADL FDF+LVE ++ + G Sbjct: 71 HRRRIISGNRSAMHEFDKDSVYIRNFEEDYRADLHGAFDFVLVEFSRAFITNTGYERSGS 130 Query: 154 KASGLATITGHDDPVLAHLAAALAPALAQPDADNHLFVDQLGLAMGTHLLQRYGGA-SLS 212 +G + G DP+ HLA LA AL + + LF++QLG+ +GTHL+ YGGA + S Sbjct: 131 HMTGFSAQPGGKDPIFGHLAQVLALALDRESQASPLFIEQLGVTIGTHLVDHYGGAPAQS 190 Query: 213 APRHVRLSRLHEERAKQMLLQKNRDQVSIPEIARECNMSASYFLRAFKASTGHTPHQWLL 272 RLS LHE RAK MLL K +D VS+ EIA CN+S SYF+RAF+ +T TPHQWLL Sbjct: 191 VKPGRRLSSLHETRAKDMLLAKTQDNVSLEEIASACNLSRSYFIRAFRETTNRTPHQWLL 250 Query: 273 LQRVDMAREYLRHSGLSLAEIAVACDFYDQSHFSRVFSQIVGSSPGAWRR 322 QR++ +R LR S SL+EIA+AC F DQSHF+R F+Q+VG+ PG+WRR Sbjct: 251 EQRIERSRHLLRSSDASLSEIAIACGFSDQSHFTRTFTQLVGTPPGSWRR 300 >ref|YP_001889835.1| AraC family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD20464.1| transcriptional regulator, AraC family [Burkholderia phytofirmans PsJN] Length = 305 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 141/285 (49%), Positives = 189/285 (66%), Gaps = 1/285 (0%) Query: 40 DSLGCSSTALKQSQELQGSQFSFYRKRVEGREVSQVYTPASDRGFLVGISMASQHRRSIF 99 DSLGC S L + EL +F FYRK + S V SDRGFL+G+S+ HRR I+ Sbjct: 18 DSLGCLSNQLGRDLELDTGEFKFYRKSTVDDQASAVAMHGSDRGFLIGVSLKPGHRRRIY 77 Query: 100 RGRQGAQFEFGRGAVYIRDFSEDYRADLQTPFDFLLVELPLSWFATVNEDLRGRKASGLA 159 + +F + +VYIRDF++DY+ADLQ FDF+L+EL ++ A + G + LA Sbjct: 78 SAHRWTTHDFSQDSVYIRDFADDYKADLQRGFDFVLIELSRAFIANACYERNGSNVARLA 137 Query: 160 TITGHDDPVLAHLAAALAPALAQPDADNHLFVDQLGLAMGTHLLQRYGGASLSA-PRHVR 218 T+ G +DP L H A L+ L + + LFV+QLG+A+GTHLL +YG + S+ + R Sbjct: 138 TLAGRNDPTLGHFAQILSLTLDRKSEASPLFVEQLGIAVGTHLLDQYGDTACSSFSKTRR 197 Query: 219 LSRLHEERAKQMLLQKNRDQVSIPEIARECNMSASYFLRAFKASTGHTPHQWLLLQRVDM 278 LS L E RAK MLL K++ VSI EIA CN+S SYF+RAF+ +T TPHQWLL QR+D Sbjct: 198 LSSLQETRAKDMLLAKSQGSVSIEEIANACNLSRSYFIRAFRETTHRTPHQWLLEQRIDR 257 Query: 279 AREYLRHSGLSLAEIAVACDFYDQSHFSRVFSQIVGSSPGAWRRR 323 AR+ LR+S SL++IA+AC F DQSHF+R FSQ+VG+ PG WRR+ Sbjct: 258 ARDLLRNSDYSLSQIAIACGFSDQSHFTRTFSQLVGTPPGTWRRQ 302