BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1827.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777900.1| transcription regulator protein [Herbaspiril... 371 e-101 ref|YP_586658.1| Negative transcriptional regulator [Cupriavidus... 307 7e-82 ref|ZP_07674452.1| transcription antitermination factor NusB [Ra... 295 2e-78 ref|ZP_03265989.1| FMN-binding negative transcriptional regulato... 294 5e-78 ref|YP_004417405.1| negative transcriptional regulator [Pusillim... 294 7e-78 >ref|YP_003777900.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65992.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 212 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 192/211 (90%), Positives = 196/211 (92%) Query: 1 MYIPDHFADQDTASLHQLITAHPFGVLVSHTASGLDANHLPCHLDPAQGALGTLHLHVAR 60 MYIP HFAD DTASLHQLI AHPFGVLVSHTASGLDANHLPCHLD AQG LGTLHLHVAR Sbjct: 1 MYIPAHFADNDTASLHQLIAAHPFGVLVSHTASGLDANHLPCHLDTAQGPLGTLHLHVAR 60 Query: 61 ANPLWRELADGDEVLVVFSAGDAYISPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDE 120 AN LWRELADGD VLVVFSAGDAY+SPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDE Sbjct: 61 ANALWRELADGDPVLVVFSAGDAYVSPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDE 120 Query: 121 RYLRGVVARLTRTHEAGEAKPWKMSDAPADYTDTLLKAIVGIEIEITRLEGKRKLSQNKD 180 RYLRGVVARLTRTHEAGE KPWKMSDAPAD+TDTLLKAIVGIEIEITRLEGKRKLSQNK+ Sbjct: 121 RYLRGVVARLTRTHEAGEEKPWKMSDAPADFTDTLLKAIVGIEIEITRLEGKRKLSQNKE 180 Query: 181 VRDIEGAGRTLAERGHLQLGEAMLQEAARKQ 211 VRDIEGAG TL RGH LG+AML EA RKQ Sbjct: 181 VRDIEGAGHTLVARGHEALGQAMLAEAQRKQ 211 >ref|YP_586658.1| Negative transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11389.1| Negative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 216 Score = 307 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 149/212 (70%), Positives = 177/212 (83%) Query: 1 MYIPDHFADQDTASLHQLITAHPFGVLVSHTASGLDANHLPCHLDPAQGALGTLHLHVAR 60 MY+P HF + +LH L+TA+PFG LV+H +GLDANH+P HLDP+QG G L HVAR Sbjct: 1 MYVPAHFEESRPEALHALMTAYPFGTLVTHGRNGLDANHIPFHLDPSQGPNGMLKAHVAR 60 Query: 61 ANPLWRELADGDEVLVVFSAGDAYISPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDE 120 ANP+W+++ADGDEVLV+F A DAYISP+WYPSKHEAH+QVPTWNY V HAHGR+TIRDDE Sbjct: 61 ANPVWQDVADGDEVLVIFRAADAYISPNWYPSKHEAHKQVPTWNYMVVHAHGRITIRDDE 120 Query: 121 RYLRGVVARLTRTHEAGEAKPWKMSDAPADYTDTLLKAIVGIEIEITRLEGKRKLSQNKD 180 R++RGVVA LTRTHEA + +PWKMSDAP+D+ DT+LKAIVGIEIEITRLEGK KLSQNK+ Sbjct: 121 RFVRGVVAHLTRTHEATQPRPWKMSDAPSDFVDTMLKAIVGIEIEITRLEGKLKLSQNKE 180 Query: 181 VRDIEGAGRTLAERGHLQLGEAMLQEAARKQQ 212 VRDI GAG LAE+G LGEAML A K++ Sbjct: 181 VRDIRGAGTALAEQGSTTLGEAMLARADAKER 212 >ref|ZP_07674452.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] gb|EFP67272.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] Length = 212 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 144/212 (67%), Positives = 169/212 (79%) Query: 1 MYIPDHFADQDTASLHQLITAHPFGVLVSHTASGLDANHLPCHLDPAQGALGTLHLHVAR 60 MYIP HF + +LH LI +PFG LV+H GLDANH+P L P +G LG LH HVAR Sbjct: 1 MYIPAHFEESRPEALHDLIAQNPFGTLVTHGEHGLDANHIPFLLLPEEGKLGVLHAHVAR 60 Query: 61 ANPLWRELADGDEVLVVFSAGDAYISPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDE 120 ANP+W+++A+GDEVLV+F AGDAYISP+WYPSKHEAHRQVPTWNY VAH HGR+T+RDDE Sbjct: 61 ANPVWKDVANGDEVLVIFRAGDAYISPTWYPSKHEAHRQVPTWNYRVAHTHGRITVRDDE 120 Query: 121 RYLRGVVARLTRTHEAGEAKPWKMSDAPADYTDTLLKAIVGIEIEITRLEGKRKLSQNKD 180 R++RGVVARLTRT+EA + PWKMSDAP+DYTD LLK IVGIEIEITR+EGK KLSQNK+ Sbjct: 121 RFVRGVVARLTRTYEASQPAPWKMSDAPSDYTDALLKMIVGIEIEITRIEGKLKLSQNKE 180 Query: 181 VRDIEGAGRTLAERGHLQLGEAMLQEAARKQQ 212 RDI GAG L G +G+AML AA K + Sbjct: 181 TRDIVGAGEALRASGERVIGDAMLACAAAKTE 212 >ref|ZP_03265989.1| FMN-binding negative transcriptional regulator [Burkholderia sp. H160] gb|EEA02412.1| FMN-binding negative transcriptional regulator [Burkholderia sp. H160] Length = 212 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 143/212 (67%), Positives = 168/212 (79%) Query: 1 MYIPDHFADQDTASLHQLITAHPFGVLVSHTASGLDANHLPCHLDPAQGALGTLHLHVAR 60 MY+P HF + D LH LIT HPFG LV+H SGLDANH+P L P + GTL HVAR Sbjct: 1 MYVPAHFNESDPEVLHALITQHPFGTLVTHGKSGLDANHIPFELLPGERTPGTLQAHVAR 60 Query: 61 ANPLWRELADGDEVLVVFSAGDAYISPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDE 120 ANPL +++ADGDEVLV+F AGDAYISP+WYPSKHE HRQVPTWNY V HAHGR+ IRDDE Sbjct: 61 ANPLLQDIADGDEVLVIFRAGDAYISPTWYPSKHEQHRQVPTWNYVVVHAHGRIRIRDDE 120 Query: 121 RYLRGVVARLTRTHEAGEAKPWKMSDAPADYTDTLLKAIVGIEIEITRLEGKRKLSQNKD 180 +++RGVVARLTRTHEA E PWKM DAP+DY D +LKAIVG+EI+ITRL GKRKL QNK+ Sbjct: 121 KFVRGVVARLTRTHEANEETPWKMGDAPSDYLDGMLKAIVGLEIDITRLVGKRKLGQNKE 180 Query: 181 VRDIEGAGRTLAERGHLQLGEAMLQEAARKQQ 212 RDI GAG L RG++Q+ +AML AA+K + Sbjct: 181 ARDIRGAGEALRARGNVQISDAMLACAAQKPE 212 >ref|YP_004417405.1| negative transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC20781.1| negative transcriptional regulator [Pusillimonas sp. T7-7] Length = 212 Score = 294 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 138/212 (65%), Positives = 169/212 (79%) Query: 1 MYIPDHFADQDTASLHQLITAHPFGVLVSHTASGLDANHLPCHLDPAQGALGTLHLHVAR 60 MY+P HF + +LH LI HPFG L++H ASGLDANH+P LDP QG +G L HVAR Sbjct: 1 MYVPTHFDEPGAEALHNLIRQHPFGTLITHGASGLDANHIPFELDPQQGEMGLLTAHVAR 60 Query: 61 ANPLWRELADGDEVLVVFSAGDAYISPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDE 120 ANP+W++++DGDEVLVVF GDAYISP+WYPSKH+ H+Q PTWNY VAHA+GR+TIRDDE Sbjct: 61 ANPVWQDVSDGDEVLVVFRTGDAYISPNWYPSKHKLHKQAPTWNYVVAHAYGRITIRDDE 120 Query: 121 RYLRGVVARLTRTHEAGEAKPWKMSDAPADYTDTLLKAIVGIEIEITRLEGKRKLSQNKD 180 R++RG+VARLTRTHEA E PWKM+D+P D+ DT+LKAIVG+E+EITRL GK KLSQNKD Sbjct: 121 RFVRGMVARLTRTHEASEPTPWKMTDSPKDFIDTMLKAIVGLEVEITRLVGKSKLSQNKD 180 Query: 181 VRDIEGAGRTLAERGHLQLGEAMLQEAARKQQ 212 V DI GAG+ L +G +G+AML A K + Sbjct: 181 VDDIRGAGKALKAKGDRVIGDAMLACADVKSR 212