BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1826.p         (177 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777901.1| hypothetical protein Hsero_4527 [Herbaspiril...   254   3e-66
ref|YP_544515.1| transmembrane pair [Methylobacillus flagellatus...   176   1e-42
ref|YP_440131.1| hypothetical protein BTH_II1937 [Burkholderia t...   158   2e-37
ref|YP_002942099.1| transmembrane pair domain-containing protein...   156   1e-36
ref|ZP_04763683.1| transmembrane pair domain protein [Acidovorax...   155   2e-36

>ref|YP_003777901.1| hypothetical protein Hsero_4527 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65993.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  254 bits (650), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 144/150 (96%), Positives = 146/150 (97%)

Query: 28  MQGFKRKLVYACLFEGLAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 87
           MQGFKRKLVYACLFE LAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE
Sbjct: 1   MQGFKRKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 60

Query: 88  RWEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWNAFVLDFGLIVFFMIY 147
           RWEARQPRRGRNFARRAAHAIGFEGGLV+MLVPLFAWWL ISLWNAFVLD GLIVFFMIY
Sbjct: 61  RWEARQPRRGRNFARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAFVLDLGLIVFFMIY 120

Query: 148 TYLFNLPFDRVFGLPSSAMPAPSGQAAQVR 177
           TYLFNL FDR+FGLPSSAMPAPSGQAAQVR
Sbjct: 121 TYLFNLLFDRIFGLPSSAMPAPSGQAAQVR 150


>ref|YP_544515.1| transmembrane pair [Methylobacillus flagellatus KT]
 gb|ABE48674.1| transmembrane pair [Methylobacillus flagellatus KT]
          Length = 151

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/145 (64%), Positives = 109/145 (75%), Gaps = 1/145 (0%)

Query: 28  MQGFKRKLVYACLFEGLAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 87
           MQG KRKLVY  L+E  A++FT+VGL++  G    HA  A VASST+AF+WN I+N  FE
Sbjct: 1   MQGIKRKLVYVTLYEAFAMLFTSVGLALFSGRSLAHAGVAGVASSTVAFIWNLIYNTGFE 60

Query: 88  RWEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWNAFVLDFGLIVFFMIY 147
            WEARQP  GR+ ARR  HA GFE GLVV LVPLFAWWL +SLW A  +D GLI+FF+IY
Sbjct: 61  AWEARQPGTGRSVARRLLHAAGFEAGLVVTLVPLFAWWLQVSLWEALWMDIGLIIFFLIY 120

Query: 148 TYLFNLPFDRVFGLPSSAMPAPSGQ 172
           TYLFNL FD VFGLP+SA  A +GQ
Sbjct: 121 TYLFNLLFDHVFGLPASAQ-ATTGQ 144


>ref|YP_440131.1| hypothetical protein BTH_II1937 [Burkholderia thailandensis E264]
 gb|ABC35138.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 185

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 101/158 (63%), Positives = 112/158 (70%), Gaps = 3/158 (1%)

Query: 12  NTAGPTPCAFHRPEFIMQGFKRKLVYACLFEGLAIVFTTVGLSVLGGHDSGHATAAAVAS 71
           NTA P   A   P   MQGFKRK+VY   FE +AI  TT G S+L G    HA+ AAVAS
Sbjct: 25  NTASP---ASPVPHSAMQGFKRKIVYVTCFELIAIAITTTGFSLLTGQAPAHASIAAVAS 81

Query: 72  STIAFVWNFIFNGLFERWEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLW 131
           S IA  WN  +N  FE WEARQ RRGR   RR AHA+GFE GLVVMLVPLFAWWL +SLW
Sbjct: 82  SAIAVAWNLAYNTAFEWWEARQTRRGRGLLRRIAHAVGFEAGLVVMLVPLFAWWLDVSLW 141

Query: 132 NAFVLDFGLIVFFMIYTYLFNLPFDRVFGLPSSAMPAP 169
            AFVLD GLI FF+ YT+ FNL FDR+FGLP+SA PAP
Sbjct: 142 QAFVLDLGLIAFFLAYTFAFNLAFDRLFGLPASARPAP 179


>ref|YP_002942099.1| transmembrane pair domain-containing protein [Variovorax paradoxus
           S110]
 gb|ACS16833.1| transmembrane pair domain protein [Variovorax paradoxus S110]
          Length = 153

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 112/143 (78%)

Query: 28  MQGFKRKLVYACLFEGLAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 87
           MQGF+R++VY  L+EG+AIV  + GL+++     GH+   AVA+S IA +WN +FN LFE
Sbjct: 1   MQGFQRRVVYISLYEGIAIVAASAGLALMTDAGLGHSGVLAVAASVIAVIWNLVFNALFE 60

Query: 88  RWEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWNAFVLDFGLIVFFMIY 147
           RWE+RQ  RGR+  RR AHA+GFEGGL+ +LVPLFAW LG++LW A V+D GL+VFF+IY
Sbjct: 61  RWESRQAVRGRSVRRRVAHAVGFEGGLIAVLVPLFAWGLGVTLWQALVMDLGLVVFFLIY 120

Query: 148 TYLFNLPFDRVFGLPSSAMPAPS 170
           T++FN  FDRVFGLP+SA PA +
Sbjct: 121 TFVFNWGFDRVFGLPASAAPAKT 143


>ref|ZP_04763683.1| transmembrane pair domain protein [Acidovorax delafieldii 2AN]
 gb|EER59520.1| transmembrane pair domain protein [Acidovorax delafieldii 2AN]
          Length = 161

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/141 (63%), Positives = 109/141 (77%)

Query: 28  MQGFKRKLVYACLFEGLAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 87
           +QG  R+++Y  L+E +AI   TVGL+ L G  +GH++  A A+S IA VWN +FN  FE
Sbjct: 20  LQGPWRRVIYVTLYELIAIGAATVGLAQLTGQGAGHSSVVAAAASAIAVVWNIVFNWAFE 79

Query: 88  RWEARQPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWNAFVLDFGLIVFFMIY 147
           RWE+RQ  RGR+ ARRAAHAIGFEGGLV  LVPLFAWW GISLW AFV+D GLIVFF+ Y
Sbjct: 80  RWESRQAVRGRSVARRAAHAIGFEGGLVFTLVPLFAWWFGISLWQAFVMDLGLIVFFLCY 139

Query: 148 TYLFNLPFDRVFGLPSSAMPA 168
           T++FN  FDRVFGLP+SA+ A
Sbjct: 140 TFVFNWVFDRVFGLPASALQA 160