BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1825.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777902.1| LysR family transcription regulator protein ... 507 e-141 ref|YP_544514.1| LysR family transcriptional regulator [Methylob... 357 2e-96 ref|YP_002872646.1| putative LysR family transcriptional regulat... 327 2e-87 ref|YP_004152529.1| LysR family transcriptional regulator [Vario... 326 4e-87 ref|YP_002942098.1| LysR family transcriptional regulator [Vario... 325 6e-87 >ref|YP_003777902.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65994.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 276/300 (92%), Positives = 288/300 (96%) Query: 62 MAFSSDNVRVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLVLFDRTARDARPT 121 MAFSSDNVRVFLAVLDSGSFSAAAR+LGRVPSSVSMTISQLEAELDL LFDRTARDARPT Sbjct: 1 MAFSSDNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARPT 60 Query: 122 ELARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSVPWAKPLAVLAEEFP 181 ++ARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLS PWAKPLAVLA+EFP Sbjct: 61 DMARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAQEFP 120 Query: 182 SLEVEVLSSPQADAMRMLYDNTAQLALVFERHAGNDREAFQEFSSEMMVAVIAPEHPARL 241 SLEVEVLSSPQADAMRMLYD+TAQLALVFER AGNDREAFQEFSSEM+VAVIAP+HPA Sbjct: 121 SLEVEVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHPALR 180 Query: 242 RKKRKLRYEDLYDIRQIAVASRDASISDPRFFLARHLWRTDNHLATLSLVREGLGWAYLP 301 RKKRKLRYEDLYDIRQIAVASRDA +SDPRFFLAR +WRTDNHLATLSLVREGLGWAYLP Sbjct: 181 RKKRKLRYEDLYDIRQIAVASRDARVSDPRFFLARQIWRTDNHLATLSLVREGLGWAYLP 240 Query: 302 HSLVQAQIEAGTLVVIDFDNISNQQRMWVDVVWNKDQPLGLGAQRFIALMREMAPSRRKR 361 SLVQAQIEAG L VIDFDNISNQQR WVDVVW KD+PLGLGAQRF+ALMREMAP+RRKR Sbjct: 241 QSLVQAQIEAGALTVIDFDNISNQQRQWVDVVWCKDRPLGLGAQRFVALMREMAPARRKR 300 >ref|YP_544514.1| LysR family transcriptional regulator [Methylobacillus flagellatus KT] gb|ABE48673.1| transcriptional regulator, LysR family [Methylobacillus flagellatus KT] Length = 295 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 188/293 (64%), Positives = 237/293 (80%) Query: 62 MAFSSDNVRVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLVLFDRTARDARPT 121 MAFSSDNV++FLAV+D GSFSAAAR LGRVPS+VSM I+QLEAELDL+LFDR+ PT Sbjct: 1 MAFSSDNVKIFLAVIDRGSFSAAARVLGRVPSAVSMAIAQLEAELDLLLFDRSGHSPIPT 60 Query: 122 ELARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSVPWAKPLAVLAEEFP 181 A ALEP AR L S L QL AHAL++HQGLE++L++A+APELLS PW+ PLA LAEEFP Sbjct: 61 PAALALEPLARQLMSQLTQLQAHALSLHQGLEKRLSIAIAPELLSAPWSLPLAHLAEEFP 120 Query: 182 SLEVEVLSSPQADAMRMLYDNTAQLALVFERHAGNDREAFQEFSSEMMVAVIAPEHPARL 241 +LE+EVLS+PQ DA+RML++ QLALVFER A ++REAFQE SE+++AV+AP H Sbjct: 121 ALEIEVLSAPQEDALRMLHEGCVQLALVFERPALDEREAFQELRSEVLIAVVAPSHAFCQ 180 Query: 242 RKKRKLRYEDLYDIRQIAVASRDASISDPRFFLARHLWRTDNHLATLSLVREGLGWAYLP 301 + RKLR DL RQI +ASRD ++DPRF + R +WRTD++LA+LS+V+ GLGWAYLP Sbjct: 181 PQGRKLRESDLMAARQIVIASRDEQLNDPRFIVGRQVWRTDSYLASLSMVQAGLGWAYLP 240 Query: 302 HSLVQAQIEAGTLVVIDFDNISNQQRMWVDVVWNKDQPLGLGAQRFIALMREM 354 +LV+ I+ GTL I+F+N+SNQ R+WVD+VW+KD+PLGLGA R IAL+REM Sbjct: 241 QALVEPLIKGGTLYAIEFENMSNQLRLWVDMVWSKDRPLGLGASRLIALLREM 293 >ref|YP_002872646.1| putative LysR family transcriptional regulator [Pseudomonas fluorescens SBW25] emb|CAY49298.1| putative LysR-family transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 301 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 168/300 (56%), Positives = 230/300 (76%) Query: 62 MAFSSDNVRVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLVLFDRTARDARPT 121 MAF+S++++VFL+V+DSGSFSAAAR+LGRVPS+++M +SQLEAELDL+LFDR+ R A PT Sbjct: 1 MAFTSESLKVFLSVVDSGSFSAAARKLGRVPSAINMAVSQLEAELDLLLFDRSTRKAIPT 60 Query: 122 ELARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSVPWAKPLAVLAEEFP 181 A+ALEP AR +AS L LDAHAL +HQGLE +L LA+APEL + W +PL+++A EFP Sbjct: 61 AAAKALEPQARQVASQLNLLDAHALQLHQGLEGRLVLAMAPELQTGIWNRPLSIIAREFP 120 Query: 182 SLEVEVLSSPQADAMRMLYDNTAQLALVFERHAGNDREAFQEFSSEMMVAVIAPEHPARL 241 +LE+E+ S+ +AMRML++ QLAL FER ++RE F E S+++VAV +P+HPA Sbjct: 121 TLEIEIRSASHPEAMRMLHEGRVQLALGFERPGLDERETFLEAGSQLLVAVASPDHPAAA 180 Query: 242 RKKRKLRYEDLYDIRQIAVASRDASISDPRFFLARHLWRTDNHLATLSLVREGLGWAYLP 301 KK L E L ++RQI VA+ + SDPR L+R +W +DN+LATL LV++GLGWAYLP Sbjct: 181 GKKSPLGEEQLVNVRQIIVATGGPTDSDPRVVLSRRIWHSDNYLATLDLVQQGLGWAYLP 240 Query: 302 HSLVQAQIEAGTLVVIDFDNISNQQRMWVDVVWNKDQPLGLGAQRFIALMREMAPSRRKR 361 LVQ I +G L + FDN+ +Q R+WVD++W K++PLGLGA+R+++LMREMA +R Sbjct: 241 QPLVQPLITSGALTEVVFDNMPSQMRLWVDIIWVKNRPLGLGARRYLSLMREMAEGEPRR 300 >ref|YP_004152529.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU34418.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 306 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 175/291 (60%), Positives = 224/291 (76%), Gaps = 1/291 (0%) Query: 62 MAFSSDNVRVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLVLFDRTARDARPT 121 MAFSSDNV VFLAV+D GSFSAAAR L +VPS+VSM I+ LEAEL+L LFDR R+ +PT Sbjct: 1 MAFSSDNVEVFLAVIDHGSFSAAARALHKVPSAVSMAIAGLEAELNLPLFDRKGREPQPT 60 Query: 122 ELARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSVPWAKPLAVLAEEFP 181 AR+LEP AR+LA+ L+QL ALA+ QGLE +LTLA+APELL+ PW+ PLA LA+E+P Sbjct: 61 AAARSLEPQARMLAAQLKQLQVQALALTQGLENRLTLAIAPELLAAPWSGPLAELAQEYP 120 Query: 182 SLEVEVLSSPQADAMRMLYDNTAQLALVFERHAGNDREAFQEFSSEMMVAVIAPEHPARL 241 L+VEVL++PQADA+ +L+ AQLALVFER + + RE FQE S+ MVAV+AP+HPA + Sbjct: 121 LLQVEVLAAPQADALALLHSGRAQLALVFERPSLDGREGFQEVGSDTMVAVMAPDHPALV 180 Query: 242 RKK-RKLRYEDLYDIRQIAVASRDASISDPRFFLARHLWRTDNHLATLSLVREGLGWAYL 300 +LR E L + RQI VA RD + SDPRF ARH+WRTDN LA LSL+ GLGW +L Sbjct: 181 AAAGERLREEHLTNTRQIVVAGRDLATSDPRFVFARHVWRTDNALAALSLITAGLGWGWL 240 Query: 301 PHSLVQAQIEAGTLVVIDFDNISNQQRMWVDVVWNKDQPLGLGAQRFIALM 351 P + + + AG L+ I F+N+SN +WVDVVW++++PLGLGAQRF+AL+ Sbjct: 241 PRNFARPHVAAGALIEIPFENLSNGLDLWVDVVWSRERPLGLGAQRFVALI 291 >ref|YP_002942098.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS16832.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 309 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 178/291 (61%), Positives = 222/291 (76%), Gaps = 1/291 (0%) Query: 62 MAFSSDNVRVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLVLFDRTARDARPT 121 MAFSSDNV VFLAV+D GSFSAAAR L +VPS+VSM I+ LEAEL L LFDR+ R+ +PT Sbjct: 1 MAFSSDNVEVFLAVIDHGSFSAAARALRKVPSAVSMAIANLEAELALPLFDRSGREPQPT 60 Query: 122 ELARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSVPWAKPLAVLAEEFP 181 AR+LEP ARLLA+ L+QL ALA+ QGLE +LTLA+APELL+ PW+ PLA LAEE+P Sbjct: 61 AAARSLEPQARLLAAQLKQLQVQALALTQGLENRLTLAIAPELLAAPWSGPLAALAEEYP 120 Query: 182 SLEVEVLSSPQADAMRMLYDNTAQLALVFERHAGNDREAFQEFSSEMMVAVIAPEHPARL 241 L+VEVL++PQADA+ +L+ AQLALVFER + + RE FQE S+ MVAV+AP HP L Sbjct: 121 LLQVEVLAAPQADALALLHSGRAQLALVFERPSLDGREGFQEVGSDTMVAVMAPGHPVLL 180 Query: 242 RKK-RKLRYEDLYDIRQIAVASRDASISDPRFFLARHLWRTDNHLATLSLVREGLGWAYL 300 +LR E L + RQI VA RD + SDPRF ARH+WRTDN LA LSL+ GLGW +L Sbjct: 181 AAAGERLREEHLTNTRQIVVAGRDLATSDPRFVFARHVWRTDNALAALSLITAGLGWGWL 240 Query: 301 PHSLVQAQIEAGTLVVIDFDNISNQQRMWVDVVWNKDQPLGLGAQRFIALM 351 P + + + AG LV I F+N+SN +WVDVVW++++PLGLGAQRF+AL+ Sbjct: 241 PRNFARPHVAAGALVEIPFENLSNGLDLWVDVVWSRERPLGLGAQRFVALI 291