BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1824.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777903.1| 3-hydroxyacyl-CoA dehydrogenase [Herbaspiril... 508 e-142 ref|YP_004152422.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase ... 413 e-113 ref|YP_003276256.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding ... 394 e-107 ref|YP_002942001.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase ... 393 e-107 ref|YP_556147.1| putative 3-hydroxyacyl-CoA dehydrogenase [Burkh... 368 e-100 >ref|YP_003777903.1| 3-hydroxyacyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ65995.1| 3-hydroxyacyl-CoA dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 276/323 (85%), Positives = 289/323 (89%) Query: 1 MQASASGARAGQQEVRRVAVVGTGVIGASWAAYFLARGLEVSATDPMPDAEVKLRAAVAR 60 MQ S + + RVAVVGTGVIGASWAAYFLA+GLEVSA DPMP AE KLRAA+AR Sbjct: 1 MQQQVSIKGKTKSGIARVAVVGTGVIGASWAAYFLAQGLEVSAVDPMPQAEQKLRAAIAR 60 Query: 61 HWPSLELLGLATGASPERLRFSASLEEALEGADFVQENGPEREDLKIDLFRRMDAALPAH 120 HWPSL+ LGLA AS ERLRF LE ALEGADFVQENGPEREDLKIDLFRRMDAALPA Sbjct: 61 HWPSLQALGLAEHASQERLRFYDQLEAALEGADFVQENGPEREDLKIDLFRRMDAALPAQ 120 Query: 121 VVLASSSSGLLMSKVQAACRHPGRVVLGHPFNPPHLIPLVEVIGGAQTAPEAVQAALDFY 180 VVLASSSSGLLMSKVQAACRHP RVVLGHPFNPPHLIPLVEVIGGAQT+PEAVQ ALDFY Sbjct: 121 VVLASSSSGLLMSKVQAACRHPQRVVLGHPFNPPHLIPLVEVIGGAQTSPEAVQTALDFY 180 Query: 181 TAIGKKAIHVRKEVKGHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMG 240 AIGKK IHVRKEVKGHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMG Sbjct: 181 AAIGKKPIHVRKEVKGHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMG 240 Query: 241 PYLNLHMSGGEGGIGHMLDHLGPPIESWWADLGAPSITAALKAQIRAGVEEQMSGKTSAG 300 PYLNLHMSGGEGGI H+LDHLG PIESWWADLGAP++T ALKA +RAGVEEQM+GKTS Sbjct: 241 PYLNLHMSGGEGGIQHLLDHLGAPIESWWADLGAPALTDALKATVRAGVEEQMAGKTSTD 300 Query: 301 IAAERDQLLVQLLAAKSKTQVIP 323 IAAERDQLLVQLLAAKS+ +VIP Sbjct: 301 IAAERDQLLVQLLAAKSRARVIP 323 >ref|YP_004152422.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein [Variovorax paradoxus EPS] gb|ADU34311.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Variovorax paradoxus EPS] Length = 328 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 210/305 (68%), Positives = 251/305 (82%) Query: 15 VRRVAVVGTGVIGASWAAYFLARGLEVSATDPMPDAEVKLRAAVARHWPSLELLGLATGA 74 V+RVAVVGTGVIGASW AYFLA+GL+V+ATDP P AE +LRAAVA+HWP+LE GLA GA Sbjct: 20 VQRVAVVGTGVIGASWTAYFLAQGLDVNATDPSPGAEDRLRAAVAQHWPTLERFGLAEGA 79 Query: 75 SPERLRFSASLEEALEGADFVQENGPEREDLKIDLFRRMDAALPAHVVLASSSSGLLMSK 134 S +RLRF SLE+A+ ADFVQENGPER D KIDLFRRMDAA P +LASSSSGL +S Sbjct: 80 SVDRLRFHDSLEDAVSVADFVQENGPERMDFKIDLFRRMDAAAPPETILASSSSGLAISG 139 Query: 135 VQAACRHPGRVVLGHPFNPPHLIPLVEVIGGAQTAPEAVQAALDFYTAIGKKAIHVRKEV 194 VQ+ C HP RVVLGHPFNPPHLIPLVEVIGG +T+ + ++ + FY AIGK+ IHV++EV Sbjct: 140 VQSGCAHPQRVVLGHPFNPPHLIPLVEVIGGEKTSADTIERTMAFYAAIGKRPIHVKREV 199 Query: 195 KGHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMGPYLNLHMSGGEGGI 254 KGHIANRLQAALWREAFHLV +GVAS DIDTAIA+GPGLRWA+MGP++NLH+SGG GGI Sbjct: 200 KGHIANRLQAALWREAFHLVNEGVASVADIDTAIAHGPGLRWAVMGPFMNLHLSGGAGGI 259 Query: 255 GHMLDHLGPPIESWWADLGAPSITAALKAQIRAGVEEQMSGKTSAGIAAERDQLLVQLLA 314 H+L HLG PIE WW DLGAPS+TA LK ++ AGV E++ + ++ + A RD LL+ L+ Sbjct: 260 EHVLAHLGGPIEDWWKDLGAPSMTAELKQKVAAGVAEELGARRTSDLEAARDTLLLNLIR 319 Query: 315 AKSKT 319 AK+ T Sbjct: 320 AKADT 324 >ref|YP_003276256.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Comamonas testosteroni CNB-2] gb|ACY30960.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein [Comamonas testosteroni CNB-2] Length = 315 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 206/309 (66%), Positives = 248/309 (80%) Query: 10 AGQQEVRRVAVVGTGVIGASWAAYFLARGLEVSATDPMPDAEVKLRAAVARHWPSLELLG 69 A +R VAVVGTGVIGASWAA+FLARGL+V+ATDP P AE +LR AV RHWP+++ +G Sbjct: 3 AAATVIRHVAVVGTGVIGASWAAFFLARGLDVTATDPAPGAEQRLREAVQRHWPTMQRMG 62 Query: 70 LATGASPERLRFSASLEEALEGADFVQENGPEREDLKIDLFRRMDAALPAHVVLASSSSG 129 LA GAS ERLRF A LE AL+G DFVQE+GPER D K DL+ RMDAA P V+LASSSSG Sbjct: 63 LADGASLERLRFDAELERALDGCDFVQESGPERADFKADLYARMDAATPPQVLLASSSSG 122 Query: 130 LLMSKVQAACRHPGRVVLGHPFNPPHLIPLVEVIGGAQTAPEAVQAALDFYTAIGKKAIH 189 L +S +QA C+ P RVVLGHPFNPPHLIPLVEV GG T+P+++Q A+DFY A+GK+ IH Sbjct: 123 LPVSGMQARCKTPQRVVLGHPFNPPHLIPLVEVGGGDATSPDSIQRAMDFYAALGKRPIH 182 Query: 190 VRKEVKGHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMGPYLNLHMSG 249 VR+E+ GHIANRLQAALWREAFHLVEQGVAS DIDTAIA+GPGLRWALMGP++NLH+SG Sbjct: 183 VRREIAGHIANRLQAALWREAFHLVEQGVASVSDIDTAIAHGPGLRWALMGPFMNLHLSG 242 Query: 250 GEGGIGHMLDHLGPPIESWWADLGAPSITAALKAQIRAGVEEQMSGKTSAGIAAERDQLL 309 G+GG+ H+L+HLG PIESWW DLG P++T ALKA + GV E + + RD+LL Sbjct: 243 GQGGMQHLLEHLGGPIESWWRDLGNPAMTEALKAHVVQGVAEARGMRREEELERTRDELL 302 Query: 310 VQLLAAKSK 318 L+ AK++ Sbjct: 303 TDLIRAKAQ 311 >ref|YP_002942001.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase [Variovorax paradoxus S110] gb|ACS16735.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Variovorax paradoxus S110] Length = 313 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 207/304 (68%), Positives = 245/304 (80%) Query: 16 RRVAVVGTGVIGASWAAYFLARGLEVSATDPMPDAEVKLRAAVARHWPSLELLGLATGAS 75 +RVAVV TGVIGASWAAYFLARGL+V ATDP DAE +L AAVA HWP+LE GLAT AS Sbjct: 6 QRVAVVATGVIGASWAAYFLARGLDVEATDPSLDAEARLHAAVAAHWPTLERFGLATSAS 65 Query: 76 PERLRFSASLEEALEGADFVQENGPEREDLKIDLFRRMDAALPAHVVLASSSSGLLMSKV 135 P RLRF A LE+A+ ADFVQE+GPER D K LFRRMD A PAH +LASSSSGL +S V Sbjct: 66 PGRLRFHARLEDAVAQADFVQESGPERLDFKTGLFRRMDEAAPAHAILASSSSGLAISAV 125 Query: 136 QAACRHPGRVVLGHPFNPPHLIPLVEVIGGAQTAPEAVQAALDFYTAIGKKAIHVRKEVK 195 QA C+HP RVVLGHPFNPPHLIPLVEV+GG +T+ +A++ A+ FY AIGK+ IHV++EVK Sbjct: 126 QAECKHPERVVLGHPFNPPHLIPLVEVVGGERTSAQAIERAMAFYAAIGKRPIHVKREVK 185 Query: 196 GHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMGPYLNLHMSGGEGGIG 255 GHIANRLQAALWREAFHLV++GVAS DIDTAIA+GPGLRWA+MGP++NLH+SGG GGI Sbjct: 186 GHIANRLQAALWREAFHLVDEGVASVADIDTAIAHGPGLRWAVMGPFMNLHLSGGAGGIE 245 Query: 256 HMLDHLGPPIESWWADLGAPSITAALKAQIRAGVEEQMSGKTSAGIAAERDQLLVQLLAA 315 H+L HLG PIE WW DLGAPS+T LK ++ GV ++ + A + RD LL+ L+ A Sbjct: 246 HVLAHLGGPIEDWWKDLGAPSMTEELKQKVAEGVAAELGARRVAELEVARDMLLLDLIRA 305 Query: 316 KSKT 319 K+ T Sbjct: 306 KADT 309 >ref|YP_556147.1| putative 3-hydroxyacyl-CoA dehydrogenase [Burkholderia xenovorans LB400] gb|ABE36797.1| Putative 3-hydroxyacyl-CoA dehydrogenase [Burkholderia xenovorans LB400] Length = 314 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 194/309 (62%), Positives = 240/309 (77%) Query: 15 VRRVAVVGTGVIGASWAAYFLARGLEVSATDPMPDAEVKLRAAVARHWPSLELLGLATGA 74 +RRVAVVGTGVIGASWAA FL+RGL+V+ATDP A +L AV +HWP+L GLA+GA Sbjct: 6 IRRVAVVGTGVIGASWAACFLSRGLQVAATDPSSGARQRLEHAVMQHWPTLVTAGLASGA 65 Query: 75 SPERLRFSASLEEALEGADFVQENGPEREDLKIDLFRRMDAALPAHVVLASSSSGLLMSK 134 S L F SL+ ALEGA FVQENGPER D K +LF +DAA + VV+ASSSSGLL+S Sbjct: 66 SLGNLTFHDSLDAALEGAQFVQENGPERIDAKRELFAAIDAATASDVVIASSSSGLLISD 125 Query: 135 VQAACRHPGRVVLGHPFNPPHLIPLVEVIGGAQTAPEAVQAALDFYTAIGKKAIHVRKEV 194 VQ ACRHP RVVLGHPFNPPHLIPLVEVIGG T+ A++AA+DFY AIGK+ I+ +KE+ Sbjct: 126 VQTACRHPERVVLGHPFNPPHLIPLVEVIGGRLTSETAIRAAIDFYRAIGKRPINPQKEI 185 Query: 195 KGHIANRLQAALWREAFHLVEQGVASTEDIDTAIAYGPGLRWALMGPYLNLHMSGGEGGI 254 GHIANRLQAALWREAFHLV G A+ +DID AIAYGPGLRWA+MGP+ NLH+SGG G+ Sbjct: 186 SGHIANRLQAALWREAFHLVSIGAATVQDIDDAIAYGPGLRWAVMGPFANLHLSGGAEGM 245 Query: 255 GHMLDHLGPPIESWWADLGAPSITAALKAQIRAGVEEQMSGKTSAGIAAERDQLLVQLLA 314 H+L+HLG PIE+WWA LG P++T LK + GV+ ++G+ + +AA+RD +++ +L Sbjct: 246 RHLLEHLGAPIENWWAQLGTPAMTPDLKRMVIDGVDAALAGRKDSDLAAQRDLIILDVLR 305 Query: 315 AKSKTQVIP 323 AK+ IP Sbjct: 306 AKAAASAIP 314