BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1823.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777904.1| hypothetical protein Hsero_4530 [Herbaspiril... 154 6e-36 ref|YP_003039020.1| hypothetical protein PAU_00181 [Photorhabdus... 108 7e-22 ref|NP_927602.1| hypothetical protein plu0239 [Photorhabdus lumi... 97 1e-18 ref|YP_003469786.1| hypothetical protein XBJ1_3906 [Xenorhabdus ... 96 3e-18 ref|YP_003714033.1| hypothetical protein XNC1_3917 [Xenorhabdus ... 93 2e-17 >ref|YP_003777904.1| hypothetical protein Hsero_4530 [Herbaspirillum seropedicae SmR1] gb|ADJ65996.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 103/199 (51%), Positives = 132/199 (66%), Gaps = 7/199 (3%) Query: 1 MDRSVVFTPREPVLPGGIFLNCLCLLAISGYLGLLLYLQSMALLPGTPLRQLQYTGIILT 60 M+RS+VFTPREPV+PGG+ LN LCLLA+S L LLY + +P L LQ TGIILT Sbjct: 1 MNRSIVFTPREPVMPGGLVLNGLCLLAVSNCLVALLYTEWYLRVPPCELCMLQRTGIILT 60 Query: 61 GIGFLRNLRFGIKSAHYGVALVGALLTGLMALRQISLEALAGQTPTGPLLQGMHFHTWMA 120 G+GF++NL G+KSAHYGVAL+GALLTGL+ALRQ+ ++ +A L + A Sbjct: 61 GMGFMKNLCQGVKSAHYGVALLGALLTGLIALRQLWMQPVAAMLSQPVCL-------FAA 113 Query: 121 LFSLAAMLTIAALLGVKSAEYPATLLLLQSAEKENEPRRIPWGRIGAGTIFVLLAGAHLV 180 LF+L A++ IA LLGVKSAEYP TLLLLQ+AE +E +PWGRI +F+ L Sbjct: 114 LFALVAIIVIACLLGVKSAEYPGTLLLLQTAEATDEKHGVPWGRILVCAVFIATVAVTLS 173 Query: 181 ASMGGCGRLVCGEGLIDLL 199 SM C CG +++ L Sbjct: 174 GSMINCTSATCGASVLERL 192 >ref|YP_003039020.1| hypothetical protein PAU_00181 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAR67191.1| putative membrane protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAQ82274.1| putative membrane protein [Photorhabdus asymbiotica] Length = 189 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 11/177 (6%) Query: 17 GIFLNCLCLLAISGYLGLLLYLQSMALLPGTPLRQLQYTGIILTGIGFLRNLRFGIKSAH 76 G+ N + L IS L + Y Q + PL LQ TG+I+ G GFL NLRFGIKSAH Sbjct: 14 GMIFNIIGLFGISAALTVAFYYQLVLSELPCPLCLLQRTGMIMIGFGFLFNLRFGIKSAH 73 Query: 77 YGVALVGALLTGLMALRQISLEALAGQTPTGPLLQGMHFHTWMALFSLAAMLTIAALLGV 136 YG+AL+G ++TG++A+RQ+ L L G G L G+HF+TW L S+ A++ I+ +L + Sbjct: 74 YGIALIGCIVTGIIAIRQVFLHILPGDIGYGSALFGIHFYTWALLSSVIAIIAISVMLIL 133 Query: 137 KSAEYPATLLLLQSAEKENEPRRIPWGRIGAGTIFVLLAGAHLVASMGGCGRLVCGE 193 KS E + EK N P +G+I G FVLL A+L++++ CG C + Sbjct: 134 KSLEK-------TTEEKGNTP---VFGQILIG-FFVLLITANLISTVLECGGGQCDD 179 >ref|NP_927602.1| hypothetical protein plu0239 [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE12534.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 189 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 11/177 (6%) Query: 17 GIFLNCLCLLAISGYLGLLLYLQSMALLPGTPLRQLQYTGIILTGIGFLRNLRFGIKSAH 76 G+ N + L AIS L L Y Q + PL LQ G+I+ G GFL NL FGIKSAH Sbjct: 14 GMIFNLIGLFAISAVLTLAFYYQLVLSELPCPLCLLQRAGMIMIGFGFLFNLCFGIKSAH 73 Query: 77 YGVALVGALLTGLMALRQISLEALAGQTPTGPLLQGMHFHTWMALFSLAAMLTIAALLGV 136 YG++L+G ++TG++A+RQ+ L G G L G+HF+TW + S+ A++ I+ +L + Sbjct: 74 YGLSLIGCVVTGIVAIRQVFLHITPGDLGYGSALFGIHFYTWALICSVIAIIGISVMLIL 133 Query: 137 KSAEYPATLLLLQSAEKENEPRRIPWGRIGAGTIFVLLAGAHLVASMGGCGRLVCGE 193 KS E ++ E++ + I G+I G +FV+L A+L++++ CG C + Sbjct: 134 KSLE--------KTTEEKQKTSAI--GQIIIG-LFVILITANLISTILECGGGQCDD 179 >ref|YP_003469786.1| hypothetical protein XBJ1_3906 [Xenorhabdus bovienii SS-2004] emb|CBJ83024.1| conserved hypothetical protein; putative membrane protein [Xenorhabdus bovienii SS-2004] Length = 184 Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 16/179 (8%) Query: 17 GIFLNCLCLLAISGYLGLLLYLQSMALLPGTPLRQLQYTGIILTGIGFLRNLRFGIKSAH 76 + LN L L IS L + Y Q PL LQ GII+ G+GFL N+ FGIK+AH Sbjct: 10 AMVLNILGLFGISVVLIIAFYYQLARFELPCPLCLLQRAGIIMIGLGFLFNIYFGIKNAH 69 Query: 77 YGVALVGALLTGLMALRQISLEALAGQTPTGPLLQGMHFHTWMALFSLAAMLTIAALLGV 136 Y ++L+G L+TG +A+RQ+SL L G T G G+HF+TW A+ S+ ++ IA ++ + Sbjct: 70 YSLSLLGCLVTGFIAMRQVSLHILPGDTGYGSTFLGLHFYTWAAVLSILTIIAIAVIMPL 129 Query: 137 KSAEYPATLLLLQSAEKENEPRRIP--WGRIGAGTIFVLLAGAHLVASMGGCGRLVCGE 193 K A + R P G+I G +F L A+LV+++ CG C + Sbjct: 130 K-------------AGNSDSSRYTPPTLGKIAMG-LFAFLIAANLVSTVLECGSGQCDD 174 >ref|YP_003714033.1| hypothetical protein XNC1_3917 [Xenorhabdus nematophila ATCC 19061] emb|CBJ91945.1| conserved hypothetical protein; putative membrane protein [Xenorhabdus nematophila ATCC 19061] Length = 188 Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 12/174 (6%) Query: 20 LNCLCLLAISGYLGLLLYLQSMALLPGTPLRQLQYTGIILTGIGFLRNLRFGIKSAHYGV 79 LN L L IS L + Y Q PL LQ GII+ G GFL N+ FGIK+AHY + Sbjct: 17 LNILGLFGISIVLIVAFYYQLALFELPCPLCLLQRAGIIMIGFGFLFNIYFGIKNAHYSL 76 Query: 80 ALVGALLTGLMALRQISLEALAGQTPTGPLLQGMHFHTWMALFSLAAMLTIAALLGVKSA 139 ++ G L+TG +A+RQ+SL L G T G G+HF+TW A+ S+ ++ IA ++ +K+ Sbjct: 77 SIFGCLVTGFVAMRQVSLHILPGDTGYGSTFFGLHFYTWAAILSILTIIAIAVIMPLKAG 136 Query: 140 EYPATLLLLQSAEKENEPRRIPWGRIGAGTIFVLLAGAHLVASMGGCGRLVCGE 193 + K P G+I G +F L A+LV+++ CG C + Sbjct: 137 N--------TDSAKCTPP---ALGKIAMG-LFAFLIAANLVSTILECGGGQCDD 178