BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1822.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777905.1| transmembrane outer membrane porin signal pe... 526 e-147 ref|YP_004755078.1| porin [Collimonas fungivorans Ter331] >gi|34... 437 e-120 ref|YP_296308.1| porin [Ralstonia eutropha JMP134] >gi|72119201|... 325 1e-86 ref|YP_003745653.1| outer membrane porin [Ralstonia solanacearum... 317 2e-84 emb|CCA86499.1| putative outer membrane porin protein [Ralstonia... 317 2e-84 >ref|YP_003777905.1| transmembrane outer membrane porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ65997.1| transmembrane outer membrane porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 285/337 (84%), Positives = 310/337 (91%), Gaps = 1/337 (0%) Query: 44 SVQAQTSVTVYGLIDSGVEYVTNANAAG-NSLVRLSSGTMNTSRIGFRGTEDLGGGLKAI 102 SVQAQ+SVT+YGL+D+GVEY+ NA G S+ R++SG NTSRIGFRGTEDLGGGLKA+ Sbjct: 18 SVQAQSSVTIYGLVDTGVEYLNNAGPNGAGSVTRMTSGATNTSRIGFRGTEDLGGGLKAL 77 Query: 103 FQLENGFKLDNGAFDGDSNQLFNRQSNVGLEGGFGRVVVGRSFSTTYDFILPFDPMGYSA 162 FQLENGFKLDNG+FDGD+NQLFNRQS VGLEGGFGRVV GRS+STTYDF+ PFDPMGYSA Sbjct: 78 FQLENGFKLDNGSFDGDANQLFNRQSTVGLEGGFGRVVAGRSYSTTYDFLGPFDPMGYSA 137 Query: 163 NYSWVTSAGATGGRKDGMPTGVSNLVKYQGEFAGVKVGAMYGFGEVAGETSNGAKYGVGL 222 NYSW T+AGATG RKDGMPTGVSNLVKYQGEF+GVK+GAMYGFGEVAGET NGAKYGVGL Sbjct: 138 NYSWATTAGATGNRKDGMPTGVSNLVKYQGEFSGVKIGAMYGFGEVAGETRNGAKYGVGL 197 Query: 223 GWGSGPFSVAATYDRNNSVSTTNAPYDRATSAHLAAGYQLSDAWKFNLGYRYYKKTLASG 282 GWG+GPFSV ATYDRNNS + TN PYDRATSAHLAAGYQ S+AWKFNLGYRYYKK+LA+G Sbjct: 198 GWGTGPFSVVATYDRNNSATATNTPYDRATSAHLAAGYQPSEAWKFNLGYRYYKKSLATG 257 Query: 283 AADQRSDFIWGGVTYKFTPAMSVIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYL 342 AAD RSDF WGG YKFTPAM++IGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYL Sbjct: 258 AADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYL 317 Query: 343 STAYAKAKNNQLVGLSRDDVGFSNSQFGMTLGMQHRF 379 STAYAKAKN QLVGLSRDD G+ +SQFGMTLGMQHRF Sbjct: 318 STAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 354 >ref|YP_004755078.1| porin [Collimonas fungivorans Ter331] gb|AEK64255.1| Porin, Gram-negative type [Collimonas fungivorans Ter331] Length = 378 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 243/337 (72%), Positives = 279/337 (82%), Gaps = 5/337 (1%) Query: 47 AQTSVTVYGLIDSGVEYVTNANAAGNSLVRLSSGTMNTSRIGFRGTEDLGGGLKAIFQLE 106 AQTSVTVYG+ID+GVEYV NANA + LVRLSSG MNTSRIGFRGTEDLGGGLKA+FQLE Sbjct: 43 AQTSVTVYGIIDTGVEYVNNANANKDGLVRLSSGAMNTSRIGFRGTEDLGGGLKAVFQLE 102 Query: 107 NGFKLDNGAFDGDSNQLFNRQSNVGLEGGFGRVVVGRSFSTTYDFILPFDPMGYSANYSW 166 NGFK D G FD + LFNRQ+NVGLEG FG+VV+GRSF+TTYDFILPFDPMGYSA YSW Sbjct: 103 NGFKTDTGEFD-SAGLLFNRQANVGLEGSFGKVVLGRSFTTTYDFILPFDPMGYSAQYSW 161 Query: 167 VTSAGATGGRKDGMPTGVSNLVKYQGEFAGVKVGAMYGFGEVAGETSNGAKYGVGLGWGS 226 VTSAGATGGRKDGMPT N++KYQG+F K+GA YGFGE AG TS+ AKY VG+G+ S Sbjct: 162 VTSAGATGGRKDGMPTNQPNIIKYQGKFGDFKLGATYGFGETAGSTSDSAKYDVGVGYES 221 Query: 227 GPFSVAATYDRNN--SVSTTNAPYDRATSAHLAAGYQLSDAWKFNLGYRYYKKTLASGAA 284 GPF +AAT+DR N + S TN+ YD+AT+ HLA YQL +LGYR YKKTLAS AA Sbjct: 222 GPFRIAATFDRVNGTAASATNSAYDKATTIHLAGNYQLGSNLSLSLGYRNYKKTLASNAA 281 Query: 285 DQRSDFIWGGVTYKFTPAMSVIGAIYYQNIKNVAN--DADPIMYSLRLKYAMSKRTDLYL 342 D RSDF WGG +YK TP +++IGAIYYQNIKNVA+ DADPIMYS+R KYA+SKRTDLYL Sbjct: 282 DLRSDFFWGGASYKVTPVVTLIGAIYYQNIKNVASGKDADPIMYSVRGKYALSKRTDLYL 341 Query: 343 STAYAKAKNNQLVGLSRDDVGFSNSQFGMTLGMQHRF 379 S AYAKAKN+QLVGLSRDD+ + +SQ G+ G+QHRF Sbjct: 342 SAAYAKAKNSQLVGLSRDDIAYGSSQTGVIAGIQHRF 378 >ref|YP_296308.1| porin [Ralstonia eutropha JMP134] gb|AAZ61464.1| Porin, Gram-negative type [Ralstonia eutropha JMP134] Length = 367 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 194/364 (53%), Positives = 251/364 (68%), Gaps = 10/364 (2%) Query: 19 TKEISVQRNHLAASMLAAFAAFATTSVQAQTSVTVYGLIDSGVEYVTNANAAGNSLVRLS 78 +KE ++R LA LA T SV AQ+SVT+YGL+D+GVEYV +A G S+V+L+ Sbjct: 11 SKERRMKRTALA---LACIGLTGTGSVCAQSSVTMYGLVDAGVEYVNHAGPNG-SVVKLT 66 Query: 79 SGTMNTSRIGFRGTEDLGGGLKAIFQLENGFKLDNGAFDGDSNQLFNRQSNVGLEGGFGR 138 SG NTSR G RG EDLGGGLKA+F LE+G +D G D S LF+R++ VGL +G+ Sbjct: 67 SGGRNTSRWGMRGVEDLGGGLKAVFNLESGIAIDTGNLD-TSGTLFDRRATVGLSSNYGQ 125 Query: 139 VVVGRSFSTTYDFILPFDPMGYSANYSWVTSAGATGGRKDGMPTGVSNLVKYQGEFAGVK 198 VV+GR+F+TTYDF+LPFDPMGY+ NYSW TS+ ATGGRKDG+ + SN V+Y G+F G+K Sbjct: 126 VVMGRTFTTTYDFMLPFDPMGYAPNYSWATSSTATGGRKDGLFSRASNAVRYDGKFGGLK 185 Query: 199 VGAMYGFGEVAGETSNGAKYGVGLGWGSGPFSVAATYDRNNSVSTTNAPYDRA---TSAH 255 +GA GEVAG+ +KY +G+G+ +G F+ AAT+DR N ++ P D H Sbjct: 186 LGATAAMGEVAGDFKTASKYALGVGYNAGKFAAAATWDRQNGAGSSTTPADTTDYIQGIH 245 Query: 256 LAAGYQLSDAWKFNLGYRYYKKTLASGAADQRSDFIWGGVTYKFTPAMSVIGAIYYQNIK 315 A Y F GYR YK+TL +GAA +RSD WGG +Y FTPA ++ GA+Y QNIK Sbjct: 246 AGASYDFGSLSLF-AGYRNYKRTLTTGAASERSDMYWGGASYDFTPAFTLYGAVYKQNIK 304 Query: 316 NVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNNQLVGLSRDDVGFSNSQFGMTLGM 375 NDADPI++SLR +Y+ SKRT YLS YAKA+N Q V LSRD VG++NSQ G+ G+ Sbjct: 305 G-GNDADPILFSLRAQYSFSKRTLAYLSAGYAKARNGQNVSLSRDFVGYANSQTGVMAGL 363 Query: 376 QHRF 379 QHRF Sbjct: 364 QHRF 367 >ref|YP_003745653.1| outer membrane porin [Ralstonia solanacearum CFBP2957] emb|CBJ43038.1| putative outer membrane porin protein [Ralstonia solanacearum CFBP2957] Length = 353 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 185/335 (55%), Positives = 230/335 (68%), Gaps = 6/335 (1%) Query: 48 QTSVTVYGLIDSGVEYVTNANAAGNSLVRLSSGTMNTSRIGFRGTEDLGGGLKAIFQLEN 107 Q++VT+YGL+D+G+EYV +A G RL SG NTSR G RG+EDLGGGLK IF LE+ Sbjct: 22 QSNVTLYGLMDAGIEYVNHAGPNGGGATRLVSGGKNTSRWGLRGSEDLGGGLKGIFNLES 81 Query: 108 GFKLDNGAFDGDSNQLFNRQSNVGLEGGFGRVVVGRSFSTTYDFILPFDPMGYSANYSWV 167 G +D G D D N LF+R++ VGL G FG+VV GR+F+TTYDF+LP+DPMGY+ NYSW Sbjct: 82 GIAIDTGRLDTD-NTLFDRRAVVGLAGSFGQVVFGRTFTTTYDFMLPYDPMGYAPNYSWA 140 Query: 168 TSAGATGGRKDGMPTGVSNLVKYQGEFAGVKVGAMYGFGEVAGETSNGAKYGVGLGWGSG 227 TS+ ATG RKDG+ + SN V+Y G F G+K+GA GFGEVAG +KY VG+G+ +G Sbjct: 141 TSSTATGDRKDGLFSRASNAVRYDGTFGGLKLGATVGFGEVAGNFKASSKYDVGIGYSAG 200 Query: 228 PFSVAATYDRNNSVSTTNAPYDRA---TSAHLAAGYQLSDAWKFNLGYRYYKKTLASGAA 284 FS AAT+DR N T+ P D H A Y A K GYR YK+ + AA Sbjct: 201 GFSAAATWDRQNGAGTSTTPADTTDYIQGIHAGASYDFG-ALKLFAGYRNYKRAFTTAAA 259 Query: 285 DQRSDFIWGGVTYKFTPAMSVIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLST 344 QRSD W G +Y FTPA ++ GA+Y QNIK DADPI++SLR +YA+SKRT YL+ Sbjct: 260 AQRSDMYWAGASYDFTPAFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAG 318 Query: 345 AYAKAKNNQLVGLSRDDVGFSNSQFGMTLGMQHRF 379 YAKA+N Q V LSRD VGF NSQ G+T G+QHRF Sbjct: 319 GYAKARNGQNVSLSRDVVGFGNSQVGVTAGLQHRF 353 >emb|CCA86499.1| putative outer membrane porin protein [Ralstonia syzygii R24] Length = 353 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 184/335 (54%), Positives = 232/335 (69%), Gaps = 6/335 (1%) Query: 48 QTSVTVYGLIDSGVEYVTNANAAGNSLVRLSSGTMNTSRIGFRGTEDLGGGLKAIFQLEN 107 Q++VT+YG++D+G+EYV +A A G RL SG NTSR G RG+EDLGGGLK +F LE+ Sbjct: 22 QSNVTLYGIMDAGIEYVNHAGANGGGATRLVSGGKNTSRWGLRGSEDLGGGLKGLFNLES 81 Query: 108 GFKLDNGAFDGDSNQLFNRQSNVGLEGGFGRVVVGRSFSTTYDFILPFDPMGYSANYSWV 167 G +D G D D N LF+R++ VGL G FG+VV+GR+F+TTYDF+LP+DPMGY+ NYSW Sbjct: 82 GIAIDTGRLDTD-NTLFDRRAVVGLAGSFGQVVLGRTFTTTYDFMLPYDPMGYAPNYSWA 140 Query: 168 TSAGATGGRKDGMPTGVSNLVKYQGEFAGVKVGAMYGFGEVAGETSNGAKYGVGLGWGSG 227 TS+ ATG RKDG+ + SN V+Y G F G+K+GA GFGEVAG +KY +G+G+ +G Sbjct: 141 TSSTATGDRKDGLFSRASNAVRYDGTFGGLKLGATVGFGEVAGNFKASSKYDLGIGYSAG 200 Query: 228 PFSVAATYDRNNSVSTTNAPYDRAT---SAHLAAGYQLSDAWKFNLGYRYYKKTLASGAA 284 FS AAT+DR N T+ P D H A Y A K GYR YK+T + AA Sbjct: 201 GFSAAATWDRQNGAGTSTTPADTTNYIQGIHAGASYDFG-ALKLFAGYRNYKRTFTTAAA 259 Query: 285 DQRSDFIWGGVTYKFTPAMSVIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLST 344 QRSD W G +Y FTPA ++ GA+Y QNIK DADPI++SLR +YA+SKRT YL+ Sbjct: 260 TQRSDMYWAGASYDFTPAFTLYGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAG 318 Query: 345 AYAKAKNNQLVGLSRDDVGFSNSQFGMTLGMQHRF 379 YAKA+N Q V LSRD GF NSQ GMT G+QHRF Sbjct: 319 GYAKARNGQNVSLSRDVAGFGNSQVGMTAGLQHRF 353