BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1818.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777909.1| tricarboxylic acid transport protein [Herbas... 504 e-141 ref|YP_004755082.1| hypothetical protein CFU_4438 [Collimonas fu... 379 e-103 ref|ZP_08274398.1| Putative tricarboxylic transport TctC [Oxalob... 362 5e-98 ref|ZP_03213455.1| tricarboxylic transport [Salmonella enterica ... 338 9e-91 ref|YP_004731237.1| tricarboxylic transport [Salmonella bongori ... 337 1e-90 >ref|YP_003777909.1| tricarboxylic acid transport protein [Herbaspirillum seropedicae SmR1] gb|ADJ66001.1| tricarboxylic acid transport protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 258/301 (85%), Positives = 276/301 (91%) Query: 26 PCALAAECIVPAKPGGGMDASCKLLRQAMQEEGGKQDFKVAYLPGGIGAVAWSSVVSQRR 85 PCALAAECIVPAKPGGGMDASCKLL++ MQEEG + K++YLPGGIGAVAWSSVVSQRR Sbjct: 20 PCALAAECIVPAKPGGGMDASCKLLQRVMQEEGEPRSLKLSYLPGGIGAVAWSSVVSQRR 79 Query: 86 GGPETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEA 145 GGP+TLVAFSGGSLL LAQGKYG A DVRWVAGIGIDHGMIAVRSDAPWRNLKQLL+A Sbjct: 80 GGPDTLVAFSGGSLLGLAQGKYGKAVPDDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLQA 139 Query: 146 IRKDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGGDSFAALQAGHVQV 205 IR+DPSAVT+GLSGTVGSQDWLKMALL Q+AG PRQFRFVALEGGGDSFAALQAGHVQV Sbjct: 140 IRRDPSAVTIGLSGTVGSQDWLKMALLGQRAGIVPRQFRFVALEGGGDSFAALQAGHVQV 199 Query: 206 ISGDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVVWPIIRGFYMSPHAP 265 ISGD SEAAYFMA+GKVR+LAVLSEQRLPGPLQA+PTAREQGYEVVWPIIRGFYMSPH P Sbjct: 200 ISGDASEAAYFMAEGKVRVLAVLSEQRLPGPLQAVPTAREQGYEVVWPIIRGFYMSPHVP 259 Query: 266 EADYRRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQTVARYRRQSQELGLV 325 EADY+RWVRYFDR++ADP F QRS GLQPFAMTG LS YI QTV +YR+QSQELGLV Sbjct: 260 EADYQRWVRYFDRMMADPVFLAQRSTSGLQPFAMTGSQLSQYINQTVTQYRKQSQELGLV 319 Query: 326 R 326 R Sbjct: 320 R 320 >ref|YP_004755082.1| hypothetical protein CFU_4438 [Collimonas fungivorans Ter331] gb|AEK64259.1| putative exported protein [Collimonas fungivorans Ter331] Length = 320 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 186/312 (59%), Positives = 242/312 (77%), Gaps = 3/312 (0%) Query: 18 ACLLACAMPCALAA--ECIVPAKPGGGMDASCKLLRQAMQ-EEGGKQDFKVAYLPGGIGA 74 A L AC A AA +CI PAKPGGGM +CKL+++ +Q + K++YLPGGIGA Sbjct: 9 AALSACVTLGAHAAPVQCIAPAKPGGGMAVTCKLVQKGLQLQSSSAHPVKISYLPGGIGA 68 Query: 75 VAWSSVVSQRRGGPETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVRSDA 134 VAW+S+V+QRR +TLVAFSGGSL++LAQGKYG ADV +VRWVA +G+D+GMIAVRSD+ Sbjct: 69 VAWNSIVTQRRAEADTLVAFSGGSLMNLAQGKYGDADVSNVRWVAALGVDYGMIAVRSDS 128 Query: 135 PWRNLKQLLEAIRKDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGGDS 194 P++ L LL+A++K+PS VT+G +GTVGSQDWLK++LLA+Q P+ RFVALEGGG++ Sbjct: 129 PYKTLPDLLDALKKNPSKVTIGAAGTVGSQDWLKISLLAKQKQIDPKNLRFVALEGGGEA 188 Query: 195 FAALQAGHVQVISGDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVVWPI 254 F AL+AGHVQV+SGD SEA DG++R+L VLSE+RLPG L +PTAREQG +V WPI Sbjct: 189 FTALRAGHVQVVSGDASEATLHSLDGEIRVLVVLSEKRLPGALADVPTAREQGMDVSWPI 248 Query: 255 IRGFYMSPHAPEADYRRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQTVAR 314 IRG YM P +ADY+RWV FD+++A PEF++ R+ GL PFAM+G L+ YI +TV Sbjct: 249 IRGVYMGPQVSDADYKRWVGAFDKMMATPEFEQLRARNGLYPFAMSGDKLTAYIKKTVED 308 Query: 315 YRRQSQELGLVR 326 YR+QS +LGL+R Sbjct: 309 YRKQSDQLGLIR 320 >ref|ZP_08274398.1| Putative tricarboxylic transport TctC [Oxalobacteraceae bacterium IMCC9480] gb|EGF32128.1| Putative tricarboxylic transport TctC [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 176/299 (58%), Positives = 229/299 (76%), Gaps = 2/299 (0%) Query: 28 ALAAECIVPAKPGGGMDASCKLLRQAMQEEGGKQDFKVAYLPGGIGAVAWSSVVSQRRGG 87 A AAECIVP+KPGG MD +CKL+R+ +Q+ D + YLPGGIGAVAW ++VSQRR Sbjct: 6 ATAAECIVPSKPGGAMDLTCKLVRKGLQDL--PVDLHIGYLPGGIGAVAWHTLVSQRRAE 63 Query: 88 PETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEAIR 147 P+TLV FSGGSLL+LA+GK+G A DVRWVA +G+D+GMIAVR+D+P++ L L+ A++ Sbjct: 64 PDTLVVFSGGSLLNLAEGKFGDAQTRDVRWVAALGLDYGMIAVRADSPYQTLADLVTALK 123 Query: 148 KDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGGGDSFAALQAGHVQVIS 207 P V +G SGT+GSQDWLKMALLA+QAG P+ RFVALEGGG+SF A+QAGHVQV+S Sbjct: 124 NHPDKVLIGASGTIGSQDWLKMALLAKQAGINPKVLRFVALEGGGESFIAMQAGHVQVVS 183 Query: 208 GDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVVWPIIRGFYMSPHAPEA 267 GD SEA + G R+LAVL+EQRLPG L A+PTAREQG +++WP+IRG +M P +A Sbjct: 184 GDASEATLYARAGNTRVLAVLAEQRLPGALAAVPTAREQGVDLIWPVIRGVWMGPQVSDA 243 Query: 268 DYRRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQTVARYRRQSQELGLVR 326 DY +WV FDR++A P F R+ GL PF++TG L+DY+ + V YR+++ ELGL+R Sbjct: 244 DYLKWVATFDRMMAAPAFAATRTHFGLYPFSLTGAALTDYVGKAVTAYRQRAAELGLLR 302 >ref|ZP_03213455.1| tricarboxylic transport [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gb|EDZ02486.1| tricarboxylic transport [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 325 Score = 338 bits (866), Expect = 9e-91, Method: Composition-based stats. Identities = 162/315 (51%), Positives = 223/315 (70%), Gaps = 3/315 (0%) Query: 13 VRLLAACLLACAMPCALAAECIVPAKPGGGMDASCKLLRQAMQEEGG-KQDFKVAYLPGG 71 + L++ +LA P ECI PAKPGGG D +CKL++ ++ E G ++ +V Y+PGG Sbjct: 13 ILLMSTSVLAQEAPSR--TECIAPAKPGGGFDLTCKLIQVSLLETGAIEKPMRVTYMPGG 70 Query: 72 IGAVAWSSVVSQRRGGPETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVR 131 +GAVA++++V+QR G P T+VAFSGGSLL+L+QGK+G V DVRW+A +G D+GMIAVR Sbjct: 71 VGAVAYNAIVAQRPGEPGTVVAFSGGSLLNLSQGKFGRYGVDDVRWLASVGTDYGMIAVR 130 Query: 132 SDAPWRNLKQLLEAIRKDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGG 191 +D+PW+ LK L+ A+ KDP++V +G ++GSQDW+K ALLAQ+A P + R+VA EGG Sbjct: 131 ADSPWKTLKDLMTAMEKDPNSVVIGAGASIGSQDWMKSALLAQKANVDPHKMRYVAFEGG 190 Query: 192 GDSFAALQAGHVQVISGDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVV 251 G+ AL HVQV+SGD SE ++ K+R+LAV SE RLPG L IPTA+EQGY++V Sbjct: 191 GEPVTALMGNHVQVVSGDLSEMVPYLGGDKIRVLAVFSENRLPGQLANIPTAKEQGYDLV 250 Query: 252 WPIIRGFYMSPHAPEADYRRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQT 311 WPIIRGFY+ P EADY+ WV F ++ EF +QR + GL F MTG+ L DY+ + Sbjct: 251 WPIIRGFYVGPKVSEADYQWWVDTFKKLQQTDEFKKQRDLRGLFEFDMTGQQLDDYVKKQ 310 Query: 312 VARYRRQSQELGLVR 326 V YR Q++ GL + Sbjct: 311 VTDYREQAKAFGLAK 325 >ref|YP_004731237.1| tricarboxylic transport [Salmonella bongori NCTC 12419] emb|CCC31470.1| tricarboxylic transport [Salmonella bongori NCTC 12419] Length = 325 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 161/315 (51%), Positives = 224/315 (71%), Gaps = 3/315 (0%) Query: 13 VRLLAACLLACAMPCALAAECIVPAKPGGGMDASCKLLRQAMQEEGG-KQDFKVAYLPGG 71 + L++ +LA P ECI PAKPGGG D +CKL++ ++ E G ++ +V Y+PGG Sbjct: 13 ILLMSTSVLAQQAPSR--TECIAPAKPGGGFDLTCKLIQVSLLETGAIEKPMRVTYMPGG 70 Query: 72 IGAVAWSSVVSQRRGGPETLVAFSGGSLLSLAQGKYGPADVGDVRWVAGIGIDHGMIAVR 131 +GAVA++++V+QR G P T+VAFSGGSLL+L+QGK+G V DVRW+A +G D+GMIAVR Sbjct: 71 VGAVAYNAIVAQRPGEPGTVVAFSGGSLLNLSQGKFGRYGVDDVRWLASVGTDYGMIAVR 130 Query: 132 SDAPWRNLKQLLEAIRKDPSAVTVGLSGTVGSQDWLKMALLAQQAGFTPRQFRFVALEGG 191 +D+PW+ LK L+ A+ KDP++V +G ++GSQDW+K ALLAQ+A P + R+VA EGG Sbjct: 131 ADSPWKTLKDLMTAMEKDPNSVVIGAGASIGSQDWMKSALLAQKASVDPHKMRYVAFEGG 190 Query: 192 GDSFAALQAGHVQVISGDTSEAAYFMADGKVRILAVLSEQRLPGPLQAIPTAREQGYEVV 251 G+ AL HVQV+SGD SE +++ K+R+LAV SE RLPG L IPTA+EQGY++V Sbjct: 191 GEPVTALMGNHVQVVSGDLSEMVPYLSGDKIRVLAVFSENRLPGQLAGIPTAKEQGYDLV 250 Query: 252 WPIIRGFYMSPHAPEADYRRWVRYFDRVLADPEFDRQRSIGGLQPFAMTGKPLSDYIAQT 311 WPIIRGFY+ P +ADY+ WV F ++ EF +QR + GL F MTG+ L DY+ + Sbjct: 251 WPIIRGFYVGPKVSDADYQWWVETFKKLQQTDEFKKQRDLRGLFEFNMTGQQLDDYVKKQ 310 Query: 312 VARYRRQSQELGLVR 326 V YR Q++ GL + Sbjct: 311 VTDYREQAKAFGLAK 325