BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1817.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777910.1| two component transcription regulator protei... 391 e-107 ref|YP_004755083.1| DNA-binding response regulator TctD [Collimo... 323 1e-86 ref|ZP_08275327.1| DNA-binding response regulator TctD [Oxalobac... 281 4e-74 ref|YP_554259.1| two component transcriptional regulator [Burkho... 243 2e-62 ref|YP_003910766.1| winged helix family two component transcript... 240 1e-61 >ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66002.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 205/223 (91%), Positives = 217/223 (97%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILLVEDHIELSRWL+KA+RDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 EVLKRMRARG+RTPVLILTARGGLADRVSGLN+GADDYLAKPFELEELEARVKALLRRSQ Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 + EAVTV+CGAL FDTVSRTFTY GELLALTPREHAVLE LI+R GHTVPK+KLFQQVF+ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQA 223 L+DNAS+DAIEIYIHRLRKKLEHEG GRVGITTLRGLGYLLQA Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 >ref|YP_004755083.1| DNA-binding response regulator TctD [Collimonas fungivorans Ter331] gb|AEK64260.1| DNA-binding response regulator TctD [Collimonas fungivorans Ter331] Length = 227 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 173/222 (77%), Positives = 192/222 (86%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILL+EDH+ELSRWL+KAL+DAH +VECA NGADADSLL TQ YALVILDL+LP+MDGL Sbjct: 1 MRILLIEDHVELSRWLTKALQDAHWSVECAMNGADADSLLHTQQYALVILDLSLPKMDGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 EVLKR+RARGS+TPVLILTARGGL DRV GLNLGADDYLAKPFEL ELEARVKALLRR+Q Sbjct: 61 EVLKRLRARGSKTPVLILTARGGLQDRVQGLNLGADDYLAKPFELVELEARVKALLRRAQ 120 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 EA +CGAL FDTVSR F+Y +LALTPREHAVLEVLI R G V K+KLF +VFS Sbjct: 121 GGEAPIYSCGALQFDTVSRMFSYGNAVLALTPREHAVLEVLISRAGRVVSKEKLFDEVFS 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQ 222 L D+A+ DAIEIYIHRLRKKL+ GA V ITTLRGLGYLL+ Sbjct: 181 LVDDANPDAIEIYIHRLRKKLQRPGAEAVAITTLRGLGYLLE 222 >ref|ZP_08275327.1| DNA-binding response regulator TctD [Oxalobacteraceae bacterium IMCC9480] gb|EGF31200.1| DNA-binding response regulator TctD [Oxalobacteraceae bacterium IMCC9480] Length = 231 Score = 281 bits (719), Expect = 4e-74, Method: Composition-based stats. Identities = 162/226 (71%), Positives = 187/226 (82%), Gaps = 3/226 (1%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILLVEDH+ELSRWLS+AL+D H+TVECA NGADAD+LL TQDYALV+LDLTLP+MDGL Sbjct: 1 MRILLVEDHLELSRWLSRALQDVHMTVECASNGADADALLHTQDYALVLLDLTLPKMDGL 60 Query: 61 EVLKRMRARGS---RTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLR 117 +VL+R+RARG +TPV+ILTARGGL DRV GLNLGADDYLAKPFEL ELEARVKALLR Sbjct: 61 DVLRRLRARGGARGKTPVMILTARGGLDDRVQGLNLGADDYLAKPFELVELEARVKALLR 120 Query: 118 RSQSQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQ 177 RSQ EA+ + CGAL FDTV+R FTY G LALTPREHA LE LI R G + KD LF Sbjct: 121 RSQGNEALVLRCGALHFDTVTRMFTYGGTALALTPREHAALEALIGRAGRAISKDTLFGA 180 Query: 178 VFSLDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQA 223 VF+LDD+ + DA+++ IHR+RKKL+ A ITTLRG+GYLLQA Sbjct: 181 VFALDDDVNPDALDLVIHRVRKKLDSAAADAAAITTLRGIGYLLQA 226 >ref|YP_554259.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE34909.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 223 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 141/223 (63%), Positives = 172/223 (77%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MR+LLVED+ LSR L+ AL A LTV+C H+G AD +L TQDYALVILD+ LP++DGL Sbjct: 1 MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR + PVL+LTA G + +RV GL+LGADDYLAKPF L ELEAR +ALLRRS Sbjct: 61 EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRSH 120 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 QE + CG L +D+V R FT GELLALTPRE +VLEVLI+R G + KD L +++F Sbjct: 121 GQEPLHAQCGTLLYDSVDRGFTLDGELLALTPRERSVLEVLILRNGRAINKDTLSEKIFG 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQA 223 LD++ + DAIEIY+HRLRKKLEH VGI TLRGLGYLL+A Sbjct: 181 LDESVNADAIEIYVHRLRKKLEHSS---VGIVTLRGLGYLLEA 220 >ref|YP_003910766.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61475.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 231 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLSKALRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MR+LLVED+ LSR L+ AL A LTV+C H+G AD +L TQDYALVILD+ LP++DGL Sbjct: 9 MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 68 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNLGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR + PVL+LTA G + +RV GL+LGADDYLAKPF L ELEAR +ALLRR Sbjct: 69 EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGH 128 Query: 121 SQEAVTVACGALCFDTVSRTFTYHGELLALTPREHAVLEVLIMRQGHTVPKDKLFQQVFS 180 QEA CG L +D+V R+FT GE LALTPRE +VLEVLI+R G + K+ L +++F Sbjct: 129 GQEATRAQCGTLVYDSVDRSFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFG 188 Query: 181 LDDNASVDAIEIYIHRLRKKLEHEGAGRVGITTLRGLGYLLQA 223 LD++ + DAIEIY+HRLRKKLE VGI TLRGLGYLL+A Sbjct: 189 LDESVNADAIEIYVHRLRKKLERSS---VGIVTLRGLGYLLEA 228