BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1815.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778106.1| two component sensor histidine kinase [Herba... 792 0.0 ref|YP_004155753.1| histidine kinase [Variovorax paradoxus EPS] ... 358 9e-97 ref|YP_548835.1| periplasmic sensor signal transduction histidin... 356 5e-96 ref|ZP_03544570.1| histidine kinase [Comamonas testosteroni KF-1... 354 1e-95 ref|YP_003277253.1| periplasmic sensor signal transduction [Coma... 353 4e-95 >ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ66198.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 404/419 (96%), Positives = 411/419 (98%) Query: 1 MLIASVHSIGDLLRIENGELKASLPYAALEIYEADYSSRMIYRINGLDGKFFEGDQDLPS 60 MLIASVHSIGDLLRIENGELKASLPYAALEIYEADYSSRMIYRINGLDGKFF+GD DLPS Sbjct: 49 MLIASVHSIGDLLRIENGELKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPS 108 Query: 61 YKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALA 120 YKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALA Sbjct: 109 YKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALA 168 Query: 121 RKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPREL 180 RKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPREL Sbjct: 169 RKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPREL 228 Query: 181 QPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPVIWQEM 240 QPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPVIWQEM Sbjct: 229 QPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPVIWQEM 288 Query: 241 SGTVERATTLANQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLSPLIAEKDLDFELEG 300 SGTVERATTLANQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLSPLIAEKDLDFELE Sbjct: 289 SGTVERATTLANQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLSPLIAEKDLDFELEA 348 Query: 301 EKILVMGHPWMIGELISNLLHNAIRHTPVHGKLGIRISAREDVAELLIWDSGEGIDDQAM 360 EKILVMGHPWMIGELISNLLHNAIRHTP G+LGIRI+AREDVAELLIWDSGEGIDDQAM Sbjct: 349 EKILVMGHPWMIGELISNLLHNAIRHTPAQGRLGIRITAREDVAELLIWDSGEGIDDQAM 408 Query: 361 ENVFKAFSSNVSSAGGLGLTICGEIVDSMQATISLRNRIGKDGAVEGLDALVHFRSVAG 419 ENVFKAFSSNVSSAGGLGLTICGEIVDSMQATISLRNR+G+DG +EGL+A VH R VAG Sbjct: 409 ENVFKAFSSNVSSAGGLGLTICGEIVDSMQATISLRNRVGEDGTIEGLNASVHVRVVAG 467 >ref|YP_004155753.1| histidine kinase [Variovorax paradoxus EPS] gb|ADU37642.1| histidine kinase [Variovorax paradoxus EPS] Length = 472 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 207/421 (49%), Positives = 271/421 (64%), Gaps = 8/421 (1%) Query: 2 LIASVHSIGDLLRIE----NGELKASLPYAALEIYEADYSSRMIYRINGLDGKFFEGDQD 57 L+AS +IG+ L +E +L+A +PY+ALE +EAD SR+ YR++ LDG G + Sbjct: 46 LLASAKTIGEQLDVEGYDEKAQLRAIVPYSALEAFEADNRSRLFYRVSALDGDLISGFAE 105 Query: 58 LPSYKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRS 117 LP ++G+ + Y AL Y+ + G PVRVA L QPV + RG A+VQVAET+E R Sbjct: 106 LPFWRGRIPDRSAYAALVDFYDAQFRGQPVRVAVLLQPVASARGRGMAVVQVAETLELRE 165 Query: 118 ALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAP 177 L RK+ +TL RQ L+ VI VT++VV RA + V L ++ERPADDLSP+ P AP Sbjct: 166 TLVRKLLLDTLWRQLLLMGVIAGVTVFVVHRATRSVRELGEAIEERPADDLSPIDAPDAP 225 Query: 178 RELQPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPVIW 237 REL+P IDA ++M RL+RLLDHQ+RFV +++HQLRTPLAVLK Q+QS RGD + Sbjct: 226 RELRPLIDATTEVMGRLQRLLDHQKRFVRDSAHQLRTPLAVLKAQVQSARRGDVAPEQAF 285 Query: 238 QEMSGTVERATTLANQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLSPLIAEKDLDFE 297 E+S TVERAT LANQ+LSLAKVEQ+R + DLG + R A+DLSPL+A+K LDFE Sbjct: 286 GEISQTVERATMLANQMLSLAKVEQLRQQPESVTLDLGDVVRGIALDLSPLVADKALDFE 345 Query: 298 LE-GEKILVMGHPWMIGELISNLLHNAIRHTPVHGKLGIRISAREDVAELLIWDSGEGID 356 L E + V H WM+ EL NLLHNAI+ +P L + + A D A L + D G GI Sbjct: 346 LAIDEPVAVRAHQWMLQELTRNLLHNAIKQSPQGAALSVIVRAEGDHAVLTVLDEGPGIS 405 Query: 357 DQAMENVFKAFSS-NVSSAGGLGLTICGEIVDSMQATISLRNRIGKDGA--VEGLDALVH 413 + + +F FS+ N SS GLGL IC EIV ++ I L NR +D V GLDA+V Sbjct: 406 PELRQRLFAPFSAGNTSSGSGLGLAICREIVLALDGRIDLDNRTAQDNTARVVGLDAVVR 465 Query: 414 F 414 Sbjct: 466 L 466 >ref|YP_548835.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] gb|ABE43937.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 462 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 209/418 (50%), Positives = 275/418 (65%), Gaps = 6/418 (1%) Query: 2 LIASVHSIGDLLRI----ENGELKASLPYAALEIYEADYSSRMIYRINGLDGKFFEGDQD 57 L+AS SI + L + E EL+ ++PYAALE +EAD SRM YR++ L+G+ G Sbjct: 42 LLASAKSISEQLDVSGYDEQSELRVTVPYAALEAFEADNQSRMFYRVSSLNGEMVSGFAQ 101 Query: 58 LPSYKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRS 117 LP ++G+ + Y AL Y+D + PVRVA L QPV +++ R A++QVAET+E R+ Sbjct: 102 LPFWRGRIPAKPPYSALVDFYDDVFLEDPVRVAVLLQPVASSNGRAMAVIQVAETLELRT 161 Query: 118 ALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAP 177 LARKI +TL RQA LL VI V + VV+RA +PV L QL RP DL+ +A P AP Sbjct: 162 TLARKILIDTLWRQAVLLAVIALVAVIVVQRATRPVRRLSAQLQARPEGDLTAIAAPDAP 221 Query: 178 RELQPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPVIW 237 RELQP +DA N++M RL+ LL+HQ+RFV +A+HQLRTPLAVLK Q+QS LRGD A Sbjct: 222 RELQPLVDATNEVMGRLQHLLEHQKRFVRDAAHQLRTPLAVLKVQVQSALRGDMDAREAL 281 Query: 238 QEMSGTVERATTLANQLLSLAKVEQIRGRGAQEVCDLGMLARETAVDLSPLIAEKDLDFE 297 E++ TV+RAT LANQ+L+LAKVEQ+R + +V DL + R A+D+SPLIAEKD+DFE Sbjct: 282 DEINQTVDRATLLANQMLALAKVEQLRQQADLQVIDLAQVVRSVALDISPLIAEKDIDFE 341 Query: 298 LEGEKILVMGHPWMIGELISNLLHNAIRHTPVHGKLGIRISAREDVAELLIWDSGEGIDD 357 +E ++ H WM+GEL NLLHNA +HTP G L +RI A L I D G GI Sbjct: 342 IETVCAPILSHEWMLGELSRNLLHNATKHTPAGGTLAVRIVRDATHAALTISDGGPGISA 401 Query: 358 QAMENVFKAFSS-NVSSAGGLGLTICGEIVDSMQATISLRNRIGKDGAVEGLDALVHF 414 + +++ FS+ NV GLGL IC EI +++ TISL NR+ G V GLDA V Sbjct: 402 ELSARLYQPFSAGNVRHGSGLGLAICKEITEALGGTISLENRV-VHGQVTGLDATVRL 458 >ref|ZP_03544570.1| histidine kinase [Comamonas testosteroni KF-1] gb|EED68856.1| histidine kinase [Comamonas testosteroni KF-1] Length = 491 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 204/422 (48%), Positives = 278/422 (65%), Gaps = 9/422 (2%) Query: 2 LIASVHSIGDLLRI----ENGELKASLPYAALEIYEADYSSRMIYRINGLDGKFFEGDQD 57 L+AS SI + + + E+ +L+A +PY+ALEI+EAD SRM YR++ LDG+ G + Sbjct: 55 LLASAKSISEQIGVTGYDEHAQLRAIVPYSALEIFEADNQSRMFYRVSTLDGQLISGFAE 114 Query: 58 LPSYKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRS 117 LP + G+ + Y AL Y+D + G PVRVA L QPV + D RG A++QVAET+E R Sbjct: 115 LPVWNGRIPQRPPYAALVDFYDDEFRGHPVRVAVLLQPVASADGRGMAVIQVAETLELRE 174 Query: 118 ALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAP 177 +LA +I +TLIRQA L++V+ + + VV+RA QP+ L + L R DLSP+A P AP Sbjct: 175 SLALQILRDTLIRQALLVLVVALIVIIVVQRATQPIRQLSQDLQGRAQGDLSPLAAPEAP 234 Query: 178 RELQPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPVIW 237 RE+QP ++A NQ M RL+ LL +Q+RFV +ASHQLRTPLAVLK Q+QS RGD P + Sbjct: 235 REIQPLLEATNQTMQRLQGLLSNQKRFVRDASHQLRTPLAVLKVQVQSAKRGDIPPAQAF 294 Query: 238 QEMSGTVERATTLANQLLSLAKVEQIRGRGAQE----VCDLGMLARETAVDLSPLIAEKD 293 E+ TV+RAT +ANQ+L+LAKVEQ+R + + + L + R+ A++LSPLIA+ D Sbjct: 295 AEIDDTVDRATRVANQMLALAKVEQLRQEDSSQSSAMLAQLDDIVRDVALELSPLIADHD 354 Query: 294 LDFELEGEKILVMGHPWMIGELISNLLHNAIRHTPVHGKLGIRISAREDVAELLIWDSGE 353 +DF +E + V H WM+ EL NLLHNAIRHTP HG L + + A +A+L I DSG Sbjct: 355 MDFGIETQACCVAAHEWMLRELTRNLLHNAIRHTPRHGSLQVDVRAHNGMAQLSIEDSGS 414 Query: 354 GIDDQAMENVFKAFSS-NVSSAGGLGLTICGEIVDSMQATISLRNRIGKDGAVEGLDALV 412 GIDD+ + +F+ FS+ N S GLGL IC EIV ++ I LRN G V GL AL+ Sbjct: 415 GIDDELAQRLFQPFSAGNARSGSGLGLAICQEIVQTLGGQIELRNLHDGLGRVRGLQALI 474 Query: 413 HF 414 Sbjct: 475 QL 476 >ref|YP_003277253.1| periplasmic sensor signal transduction [Comamonas testosteroni CNB-2] gb|ACY31957.1| periplasmic sensor signal transduction [Comamonas testosteroni CNB-2] Length = 491 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 202/422 (47%), Positives = 278/422 (65%), Gaps = 9/422 (2%) Query: 2 LIASVHSIGDLLRI----ENGELKASLPYAALEIYEADYSSRMIYRINGLDGKFFEGDQD 57 L+AS SI + + + + +L+A +PY+ALEI+EAD SRM YR++ LDG+ G ++ Sbjct: 55 LLASAKSISEQIGVTGYDDQAQLRAIVPYSALEIFEADNQSRMFYRVSTLDGQLISGFEE 114 Query: 58 LPSYKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRS 117 LP + G+ + Y AL Y+D + G PVRVA L QPV + D RG A++QVAET+E R Sbjct: 115 LPVWNGRIPQRPPYAALVDFYDDEFRGHPVRVAVLLQPVASADGRGMAVIQVAETLELRE 174 Query: 118 ALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAP 177 +LA +I +TLIRQA L++V+ + + VV+RA QP+ L + L R DLSP+A P P Sbjct: 175 SLALQILRDTLIRQALLVLVVALIVIIVVQRATQPIRQLSQDLQGRAQGDLSPLAAPEVP 234 Query: 178 RELQPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPVIW 237 RE+QP ++A NQ M RL+ LL +Q+RFV +ASHQLRTPLAVLK Q+QS RGD P + Sbjct: 235 REVQPLLEATNQTMQRLQGLLSNQKRFVRDASHQLRTPLAVLKVQVQSAKRGDIPPAQAF 294 Query: 238 QEMSGTVERATTLANQLLSLAKVEQIRGRGAQE----VCDLGMLARETAVDLSPLIAEKD 293 E+ TV+RAT +ANQ+L+LAKVEQ+R + + + L + R+ A++LSPLIA+ D Sbjct: 295 AEIDDTVDRATRVANQMLALAKVEQLRQEDSNQNSSMLAQLDDIVRDVALELSPLIADHD 354 Query: 294 LDFELEGEKILVMGHPWMIGELISNLLHNAIRHTPVHGKLGIRISAREDVAELLIWDSGE 353 +DF +E + V H WM+ EL NLLHNAIRHTP HG L + + A + +A+L I DSG Sbjct: 355 MDFGIETQACCVAAHEWMLRELTRNLLHNAIRHTPRHGSLQVDVRAHDGMAQLSIEDSGS 414 Query: 354 GIDDQAMENVFKAFSS-NVSSAGGLGLTICGEIVDSMQATISLRNRIGKDGAVEGLDALV 412 GIDD+ + +F+ FS+ N S GLGL IC EIV ++ I LRN G V GL AL+ Sbjct: 415 GIDDELAQRLFQPFSAGNTRSGSGLGLAICQEIVQTLDGQIELRNLHDGLGRVCGLQALI 474 Query: 413 HF 414 Sbjct: 475 QL 476