BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1814.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778105.1| two component response regulator protein [He... 402 e-110 ref|YP_004618665.1| response regulator OmpR [Ramlibacter tataoui... 244 1e-62 ref|ZP_04764398.1| two component transcriptional regulator, wing... 241 1e-61 ref|ZP_03544569.1| two component transcriptional regulator, wing... 238 6e-61 ref|YP_003277254.1| two component transcriptional regulator [Com... 238 7e-61 >ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66197.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 220/228 (96%), Positives = 224/228 (98%) Query: 55 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 114 MHILLVEDDIDMSRAL+RALERRGFQV+HC DGISALSHIKDGIGDLVVLDLNIPGLDGL Sbjct: 1 MHILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPGLDGL 60 Query: 115 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 174 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT Sbjct: 61 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 120 Query: 175 NADDGGQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 234 NADDG QRCGRLRFDR SGAFYC D+PLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP Sbjct: 121 NADDGVQRCGRLRFDRGSGAFYCGDDPLELTPREHTLLKALIAKPGHAVTKEKLFRLVFP 180 Query: 235 MEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG 282 MEE+TQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG Sbjct: 181 MEESTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLRDRQQQGGEG 228 >ref|YP_004618665.1| response regulator OmpR [Ramlibacter tataouinensis TTB310] gb|AEG92646.1| candidate response regulator, OmpR [Ramlibacter tataouinensis TTB310] Length = 238 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 137/229 (59%), Positives = 167/229 (72%), Gaps = 4/229 (1%) Query: 49 ITTREIMHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNI 108 +T+R M +LLVEDD M R L RAL RRG V+ C DG AL+ + D+VVLDL++ Sbjct: 8 LTSRPRMKLLLVEDDAPMRRTLERALARRGMAVTACADGPRALALWQAAPPDVVVLDLSL 67 Query: 109 PGLDGLHLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRA 168 PGLDGL +L+ R + PV++LTARG VGDRV+GLNAGADDYL KPFDLDEL+AR+RA Sbjct: 68 PGLDGLQVLEHARGAGLAAPVLILTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRA 127 Query: 169 LLRRRTNADDG----GQRCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVT 224 LLRR + G LR+DR SGAFY + LELTPRE LL+AL A+PGHAV+ Sbjct: 128 LLRRHPGSQAEPPAPALHIGALRYDRESGAFYRHGQVLELTPREAALLQALGARPGHAVS 187 Query: 225 KEKLFRLVFPMEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLR 273 KE+LF LVFP E + Q EAIEVVV+R+RKKL +TG +MTLRGLGYLL+ Sbjct: 188 KERLFELVFPGEPDVQPEAIEVVVYRLRKKLADTGVTLMTLRGLGYLLK 236 >ref|ZP_04764398.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|EER58800.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 229 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 131/222 (59%), Positives = 167/222 (75%), Gaps = 3/222 (1%) Query: 55 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 114 M +LLVEDD M L RAL RRG +++ GDG +AL+ D VVLDL +PGLDGL Sbjct: 5 MQLLLVEDDPTMQVTLQRALARRGMEITAVGDGPAALNQWVARPPDAVVLDLTLPGLDGL 64 Query: 115 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 174 +LQ+ R++ + TPV++LTARG VGDRV+GLNAGADDYL KPFDLDEL+AR+RALLRR + Sbjct: 65 QVLQQARARGLRTPVLILTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALLRRSS 124 Query: 175 NADDGGQ---RCGRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLFRL 231 +A + + G +R+D+ SGA Y + E +ELTPRE L+ AL+ +PGHAVTKE+L+ L Sbjct: 125 DATPSAEHSVQIGAIRYDKDSGALYRNGEVMELTPRELALMHALLVQPGHAVTKERLYEL 184 Query: 232 VFPMEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLR 273 VFP + + Q EAIEVVV+R+RKKL TG +MTLRGLGYLLR Sbjct: 185 VFPGQLDVQYEAIEVVVYRLRKKLAGTGLTLMTLRGLGYLLR 226 >ref|ZP_03544569.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gb|EED68855.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 233 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 132/224 (58%), Positives = 168/224 (75%), Gaps = 5/224 (2%) Query: 55 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 114 M +LLVEDD M L R L RRG V DG SAL+H + D VVLDL++PGLDGL Sbjct: 5 MQLLLVEDDSAMRTTLQRTLMRRGLNVDVAADGPSALAHWQTREPDAVVLDLSLPGLDGL 64 Query: 115 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 174 +L+R R+ + TPV++LTARG VGDRV+GLNAGADDYLAKPFDLDEL+AR+RALLRR Sbjct: 65 QVLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124 Query: 175 NA---DDGGQRC--GRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLF 229 ++ G + G LR+++ SGA Y DD+ LELTPRE +++ AL+A+PGHAVTKE+LF Sbjct: 125 DSFTPRSGSEAIALGALRYEKESGAIYLDDKVLELTPRELSMMHALLARPGHAVTKERLF 184 Query: 230 RLVFPMEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLR 273 LVFP E + Q EA+EVV +R+RKKL TG +++TLRGLGYL++ Sbjct: 185 SLVFPGEVDVQYEAVEVVAYRLRKKLGGTGVQLVTLRGLGYLVK 228 >ref|YP_003277254.1| two component transcriptional regulator [Comamonas testosteroni CNB-2] ref|ZP_07046432.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gb|ACY31958.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gb|EFI59902.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 233 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 131/224 (58%), Positives = 166/224 (74%), Gaps = 5/224 (2%) Query: 55 MHILLVEDDIDMSRALVRALERRGFQVSHCGDGISALSHIKDGIGDLVVLDLNIPGLDGL 114 M +LLVEDD M L R L RRG V DG SAL+H + D VVLDL++PGLDGL Sbjct: 5 MQLLLVEDDSAMRTTLQRTLMRRGLHVDVAADGPSALAHWQTREPDAVVLDLSLPGLDGL 64 Query: 115 HLLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELDARIRALLRRRT 174 +L+R R+ + TPV++LTARG VGDRV+GLNAGADDYLAKPFDLDEL+AR+RALLRR Sbjct: 65 QVLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124 Query: 175 NADDGGQRC-----GRLRFDRASGAFYCDDEPLELTPREHTLLKALIAKPGHAVTKEKLF 229 ++ G LR+++ SGA Y DD+ LELTPRE +++ AL+A+PGHAVTKE+LF Sbjct: 125 DSFTPRSASEVITLGALRYEKESGAIYLDDKVLELTPRELSMMHALLARPGHAVTKERLF 184 Query: 230 RLVFPMEENTQLEAIEVVVHRVRKKLMETGAEIMTLRGLGYLLR 273 LVFP E + Q EA+EVV +R+RKKL TG +++TLRGLGYL++ Sbjct: 185 SLVFPGEVDVQYEAVEVVAYRLRKKLGGTGVQLVTLRGLGYLVK 228