BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1810.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778101.1| phosphate/phosphonate ABC transporter permea... 480 e-134 ref|NP_883179.1| binding-protein-dependent transport system perm... 346 3e-93 ref|ZP_06689929.1| phosphonate ABC superfamily ATP binding casse... 345 6e-93 ref|NP_881997.1| binding-protein-dependent transport system perm... 342 5e-92 ref|YP_003981584.1| phosphonate ABC transporter permease [Achrom... 342 5e-92 >ref|YP_003778101.1| phosphate/phosphonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66193.1| ABC-type phosphate/phosphonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 277 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 273/277 (98%), Positives = 275/277 (99%) Query: 1 MSDTVLPRPAAALNPAEREWQRHTPLQRILRFTVWLVIALAVVQSLRYIEIIPEFLYDAP 60 MSDTVLPRPAAALNPA+REWQRHTPLQR+LRFTVWLVIALAVVQSLRYIEIIPEFLYDAP Sbjct: 1 MSDTVLPRPAAALNPAQREWQRHTPLQRVLRFTVWLVIALAVVQSLRYIEIIPEFLYDAP 60 Query: 61 EQMSDMLARMWPIDWAYFSSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG 120 EQMSDMLARMWPIDWAYF SDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG Sbjct: 61 EQMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRG 120 Query: 121 LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR 180 LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR Sbjct: 121 LNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPR 180 Query: 181 GPIEALQASGASKFSEIWYGYWPQLKPAFTSIVLLRWDINVRESAVLGIVGAGGVGMVLD 240 GPIEALQASGASKFSEIWYGYWPQLKPAF SIVLLRWDINVRESAVLGIVGAGGVGMVLD Sbjct: 181 GPIEALQASGASKFSEIWYGYWPQLKPAFMSIVLLRWDINVRESAVLGIVGAGGVGMVLD 240 Query: 241 TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277 TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL Sbjct: 241 TALNLFQWPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277 >ref|NP_883179.1| binding-protein-dependent transport system permease protein [Bordetella parapertussis 12822] ref|NP_887494.1| binding-protein-dependent transport system permease [Bordetella bronchiseptica RB50] emb|CAE40260.1| binding-protein-dependent transport system permease protein [Bordetella parapertussis] emb|CAE31444.1| binding-protein-dependent transport system permease protein [Bordetella bronchiseptica RB50] Length = 273 Score = 346 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 179/260 (68%), Positives = 221/260 (85%) Query: 18 REWQRHTPLQRILRFTVWLVIALAVVQSLRYIEIIPEFLYDAPEQMSDMLARMWPIDWAY 77 R WQR++ Q+ LRF ++L++ A+VQ++R +E+IPEFLYDAPEQM+D+L RMWPIDW+Y Sbjct: 14 RTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMADLLRRMWPIDWSY 73 Query: 78 FSSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGLNLFARIVLVASRSVNS 137 + V A L+ETLHIATLGT+LS+ +A+P GLL A NLT R +N+ AR++LV+SRSVNS Sbjct: 74 YPEGVHAALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNS 133 Query: 138 LVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRGPIEALQASGASKFSEI 197 LVWALLF+AIFGPG LAGTLAIAFRSIGFVGK+ GE IE+ RGPIEAL A+GASK + + Sbjct: 134 LVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEALTATGASKAAVL 193 Query: 198 WYGYWPQLKPAFTSIVLLRWDINVRESAVLGIVGAGGVGMVLDTALNLFQWPRVATVLVS 257 WYGYWPQ++P+F SIVLLRWDINVRESAVLG+VGAGG+GM LDTALNLFQW RVA VL + Sbjct: 194 WYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQWDRVALVLAA 253 Query: 258 IFAIVIVTEVVVTQIRKRIL 277 IF +V+ E+V+TQ RKRIL Sbjct: 254 IFIVVVAAEIVITQARKRIL 273 >ref|ZP_06689929.1| phosphonate ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] gb|EFF73175.1| phosphonate ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] Length = 274 Score = 345 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 181/270 (67%), Positives = 225/270 (83%), Gaps = 2/270 (0%) Query: 10 AAALNPA--EREWQRHTPLQRILRFTVWLVIALAVVQSLRYIEIIPEFLYDAPEQMSDML 67 A++LN A R WQR++ QR+LRF ++L++ A+ Q++R +E+IPEFLYDAPEQM+D+ Sbjct: 5 ASSLNAAGSPRVWQRYSMGQRLLRFALYLLVVAAIAQAIRGVEVIPEFLYDAPEQMADLF 64 Query: 68 ARMWPIDWAYFSSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGLNLFARI 127 RMWPIDWAY+ V LIETLHIATLGT+LS+ +A+P GLL A NLT + +N+ AR+ Sbjct: 65 RRMWPIDWAYYPDGVHNALIETLHIATLGTILSVFMAVPVGLLAANNLTPSKTINMLARL 124 Query: 128 VLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRGPIEALQ 187 +LV+SRSVNSLVWALLF+AIFGPG LAGTLAIAFRSIGFVGK+ GE IE+ RGPIEA+ Sbjct: 125 ILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEAVT 184 Query: 188 ASGASKFSEIWYGYWPQLKPAFTSIVLLRWDINVRESAVLGIVGAGGVGMVLDTALNLFQ 247 A+GASK S +WY YWPQ++PAF SIVLLRWDINVRESAVLG+VGAGG+GM LDTALNLFQ Sbjct: 185 ATGASKGSVLWYAYWPQIRPAFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQ 244 Query: 248 WPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277 W RVA VL +IF +V++ E+++TQ RKRIL Sbjct: 245 WDRVALVLAAIFVVVVLAEIIITQARKRIL 274 >ref|NP_881997.1| binding-protein-dependent transport system permease protein [Bordetella pertussis Tohama I] emb|CAE43738.1| binding-protein-dependent transport system permease protein [Bordetella pertussis Tohama I] gb|AEE68611.1| binding-protein-dependent transport system permease protein [Bordetella pertussis CS] Length = 273 Score = 342 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 178/260 (68%), Positives = 220/260 (84%) Query: 18 REWQRHTPLQRILRFTVWLVIALAVVQSLRYIEIIPEFLYDAPEQMSDMLARMWPIDWAY 77 R WQR++ Q+ LRF ++L++ A+VQ++R +E+IPEFLYDAPEQM+ +L RMWPIDW+Y Sbjct: 14 RTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMAALLRRMWPIDWSY 73 Query: 78 FSSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGLNLFARIVLVASRSVNS 137 + V A L+ETLHIATLGT+LS+ +A+P GLL A NLT R +N+ AR++LV+SRSVNS Sbjct: 74 YPEGVHAALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNS 133 Query: 138 LVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRGPIEALQASGASKFSEI 197 LVWALLF+AIFGPG LAGTLAIAFRSIGFVGK+ GE IE+ RGPIEAL A+GASK + + Sbjct: 134 LVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEALTATGASKAAVL 193 Query: 198 WYGYWPQLKPAFTSIVLLRWDINVRESAVLGIVGAGGVGMVLDTALNLFQWPRVATVLVS 257 WYGYWPQ++P+F SIVLLRWDINVRESAVLG+VGAGG+GM LDTALNLFQW RVA VL + Sbjct: 194 WYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQWDRVALVLAA 253 Query: 258 IFAIVIVTEVVVTQIRKRIL 277 IF +V+ E+V+TQ RKRIL Sbjct: 254 IFIVVVAAEIVITQARKRIL 273 >ref|YP_003981584.1| phosphonate ABC transporter permease [Achromobacter xylosoxidans A8] gb|ADP18869.1| phosphonate ABC transporter, permease protein PhnE 4 [Achromobacter xylosoxidans A8] Length = 274 Score = 342 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 187/270 (69%), Positives = 229/270 (84%), Gaps = 2/270 (0%) Query: 10 AAALNPA--EREWQRHTPLQRILRFTVWLVIALAVVQSLRYIEIIPEFLYDAPEQMSDML 67 A+ LNPA R WQR++ QR+LRF ++L++ A+VQ++R +E+IPEFLYDAPEQM+D+ Sbjct: 5 ASTLNPAGSPRVWQRYSMGQRLLRFALYLLVVAAIVQAIRGVEVIPEFLYDAPEQMADLF 64 Query: 68 ARMWPIDWAYFSSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRHRGLNLFARI 127 RMWPIDWAY+ V LIETLHIATLGT+LS+V+A+P GLL A NLT + +N+ AR+ Sbjct: 65 RRMWPIDWAYYPEGVHGALIETLHIATLGTILSVVMAVPVGLLAANNLTPSKTVNMLARL 124 Query: 128 VLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQMPRGPIEALQ 187 +LV+SRSVNSLVWALLF+AIFGPG LAGTLAIAFRSIGFVGK+ GE IE+ RGPIEA+ Sbjct: 125 ILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEAVT 184 Query: 188 ASGASKFSEIWYGYWPQLKPAFTSIVLLRWDINVRESAVLGIVGAGGVGMVLDTALNLFQ 247 A+GASK S IWY YWPQ++PAF SIVLLRWDINVRESAVLG+VGAGG+GM LDTALNLFQ Sbjct: 185 ATGASKASVIWYAYWPQIRPAFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQ 244 Query: 248 WPRVATVLVSIFAIVIVTEVVVTQIRKRIL 277 W RVA VL +IFA+V+V E+++TQ+RKRIL Sbjct: 245 WDRVALVLAAIFAVVVVAEIIITQVRKRIL 274