BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1808.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778099.1| urease accessory UreJ transmembrane protein ... 276 2e-72 ref|YP_001353508.1| urease accessory protein UreJ [Janthinobacte... 248 6e-64 ref|YP_004753507.1| HupE-UreJ family metal transporter [Collimon... 221 8e-56 ref|YP_003072094.1| HupE/UreJ protein [Teredinibacter turnerae T... 130 1e-28 ref|YP_001417024.1| HupE/UreJ protein [Xanthobacter autotrophicu... 130 2e-28 >ref|YP_003778099.1| urease accessory UreJ transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66191.1| urease accessory UreJ transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 198/203 (97%), Positives = 201/203 (99%) Query: 73 MLTLSTKTRARLGVLAVTALAAGTALAHPGHPGSTMDGSASMAAGFAHPFSGIDHLLAML 132 MLTLSTKTRARLGVLAVTALAAGTALAHPGHPGS MD SASMAAGFAHPFSGIDHLLAML Sbjct: 1 MLTLSTKTRARLGVLAVTALAAGTALAHPGHPGSAMDASASMAAGFAHPFSGIDHLLAML 60 Query: 133 AVGLWAAQNKQRALWVLPLAFPLMMVAGALLAFAGLQVPAVETGIAASVAVLGLLIAFAV 192 AVGLWAAQNKQRALWVLPLAFPLMMVAGALLAFAGLQVPAVETGIAASVAVLGLLIAFAV Sbjct: 61 AVGLWAAQNKQRALWVLPLAFPLMMVAGALLAFAGLQVPAVETGIAASVAVLGLLIAFAV 120 Query: 193 RLPLWGSTLVVSVFAMFHGYAHGAELPHGSSAAMYGAGFIAATALLHAAGLGIGLIAGKQ 252 R+PLWGSTLVVS+FAMFHGYAHGAELPHGSSAAMYGAGFIAATALLHAAGLGIGLIAG+Q Sbjct: 121 RMPLWGSTLVVSLFAMFHGYAHGAELPHGSSAAMYGAGFIAATALLHAAGLGIGLIAGQQ 180 Query: 253 MADRVVRIGGVGIAAVGAYLLAA 275 MADRVVRIGGVGIAAVGAYLLAA Sbjct: 181 MADRVVRIGGVGIAAVGAYLLAA 203 >ref|YP_001353508.1| urease accessory protein UreJ [Janthinobacterium sp. Marseille] gb|ABR90172.1| urease accessory protein UreJ [Janthinobacterium sp. Marseille] Length = 204 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 152/203 (74%), Positives = 175/203 (86%) Query: 73 MLTLSTKTRARLGVLAVTALAAGTALAHPGHPGSTMDGSASMAAGFAHPFSGIDHLLAML 132 M +LS K AR+GV A+ LA G+ALAHP HP + M+ + S ++GF+HPFSGIDHLLAML Sbjct: 1 MFSLSNKAAARIGVFALGCLAVGSALAHPDHPETMMNSTMSFSSGFSHPFSGIDHLLAML 60 Query: 133 AVGLWAAQNKQRALWVLPLAFPLMMVAGALLAFAGLQVPAVETGIAASVAVLGLLIAFAV 192 AVGLWA Q K+ ALWVL LAFPLMMVAGALLA +G Q+PAVE+GIAASVAVLGLLIAFAV Sbjct: 61 AVGLWATQLKRSALWVLTLAFPLMMVAGALLAMSGFQLPAVESGIAASVAVLGLLIAFAV 120 Query: 193 RLPLWGSTLVVSVFAMFHGYAHGAELPHGSSAAMYGAGFIAATALLHAAGLGIGLIAGKQ 252 ++PLW ST +VSVFA+FHGYAHG+ELPHGSSAA+YGAGF+ ATALLHA GL IGL+AGKQ Sbjct: 121 KMPLWASTAIVSVFALFHGYAHGSELPHGSSAALYGAGFVLATALLHATGLLIGLVAGKQ 180 Query: 253 MADRVVRIGGVGIAAVGAYLLAA 275 MAD+VVRIGG GIAAVG YLL A Sbjct: 181 MADKVVRIGGAGIAAVGTYLLTA 203 >ref|YP_004753507.1| HupE-UreJ family metal transporter [Collimonas fungivorans Ter331] gb|AEK62684.1| HupE-UreJ family metal transporter [Collimonas fungivorans Ter331] Length = 218 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 141/199 (70%), Positives = 158/199 (79%), Gaps = 5/199 (2%) Query: 77 STKTRARLGVLAVTALAAGTALAHPGHPGSTMDGSASMAAGFAHPFSGIDHLLAMLAVGL 136 S RL LA AL+ A AHPGHP + GFAHPFSGIDHLLAMLAVGL Sbjct: 23 SASIYGRLSALACAALSIAPAFAHPGHPDAF-----GFNNGFAHPFSGIDHLLAMLAVGL 77 Query: 137 WAAQNKQRALWVLPLAFPLMMVAGALLAFAGLQVPAVETGIAASVAVLGLLIAFAVRLPL 196 WAAQNK+ ALWVLPLAFPLMMV GALLAFAGLQ+P VETGIAASVAVLGLLIAFA+R+P+ Sbjct: 78 WAAQNKRSALWVLPLAFPLMMVVGALLAFAGLQMPGVETGIAASVAVLGLLIAFAIRMPV 137 Query: 197 WGSTLVVSVFAMFHGYAHGAELPHGSSAAMYGAGFIAATALLHAAGLGIGLIAGKQMADR 256 W S VVSVFA+FHGYAHG+ELPHG+SA YG GF+AATALLH GL IGL+AG++MA + Sbjct: 138 WASAGVVSVFALFHGYAHGSELPHGASALWYGVGFVAATALLHLLGLAIGLVAGQKMAAQ 197 Query: 257 VVRIGGVGIAAVGAYLLAA 275 VR+GGV IAAVG YLL+ Sbjct: 198 AVRLGGVAIAAVGGYLLSG 216 >ref|YP_003072094.1| HupE/UreJ protein [Teredinibacter turnerae T7901] gb|ACR11894.1| HupE/UreJ protein [Teredinibacter turnerae T7901] Length = 200 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 85/180 (47%), Positives = 114/180 (63%) Query: 96 TALAHPGHPGSTMDGSASMAAGFAHPFSGIDHLLAMLAVGLWAAQNKQRALWVLPLAFPL 155 T ++ P + + + + +G HP G+DHL+AM+AVGLW AQ +Q A+W+LP+ FPL Sbjct: 15 TLISFPALGHTDVGVAGGLLSGLIHPVKGLDHLVAMIAVGLWGAQLRQPAIWLLPITFPL 74 Query: 156 MMVAGALLAFAGLQVPAVETGIAASVAVLGLLIAFAVRLPLWGSTLVVSVFAMFHGYAHG 215 +M G L AGL +P +E GIA S LGL + FA R PLW + L+V++FA+FHGYAHG Sbjct: 75 VMALGGLAGLAGLPLPGLEIGIAVSAIALGLAVGFAWRAPLWLAGLLVALFALFHGYAHG 134 Query: 216 AELPHGSSAAMYGAGFIAATALLHAAGLGIGLIAGKQMADRVVRIGGVGIAAVGAYLLAA 275 ELP + YGAGF+ AT LLH G+G+G +A + VR G GIA G Y L A Sbjct: 135 RELPQAADPLAYGAGFVVATGLLHLCGIGLGALAHWPRGAQWVRALGAGIAVCGGYFLLA 194 >ref|YP_001417024.1| HupE/UreJ protein [Xanthobacter autotrophicus Py2] gb|ABS67367.1| HupE/UreJ protein [Xanthobacter autotrophicus Py2] Length = 203 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 93/189 (49%), Positives = 116/189 (61%), Gaps = 3/189 (1%) Query: 90 TALAAGTALAHPGHPGSTMDG---SASMAAGFAHPFSGIDHLLAMLAVGLWAAQNKQRAL 146 TAL A A P P G S + +GF HP SG DHL+AM+AVGLW AQ A+ Sbjct: 9 TALVAFLFAAIPLAPAFAHTGTGVSLGLLSGFMHPLSGADHLVAMVAVGLWGAQLGNPAI 68 Query: 147 WVLPLAFPLMMVAGALLAFAGLQVPAVETGIAASVAVLGLLIAFAVRLPLWGSTLVVSVF 206 WVLP+ FPL+M G LL G+ +PAVE IA S LGL++A + R PLW + ++V VF Sbjct: 69 WVLPVTFPLVMAVGGLLGVLGVPLPAVEPVIAVSGIALGLMVALSARPPLWVAAVMVGVF 128 Query: 207 AMFHGYAHGAELPHGSSAAMYGAGFIAATALLHAAGLGIGLIAGKQMADRVVRIGGVGIA 266 A+FHGYAHG ELP + A Y GF+ AT LLH +G+ IG++ G + RVVR G I Sbjct: 129 AIFHGYAHGRELPEAADAVAYAVGFVGATGLLHLSGILIGVLVGWEAGARVVRACGAAIG 188 Query: 267 AVGAYLLAA 275 VG Y L A Sbjct: 189 CVGVYFLLA 197