BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1803.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778094.1| urease subunit beta [Herbaspirillum seropedi...   219   1e-55
ref|YP_001353503.1| urease beta subunit [Janthinobacterium sp. M...   179   1e-43
ref|YP_004753502.1| urease subunit beta [Collimonas fungivorans ...   166   8e-40
ref|YP_001899751.1| urease subunit beta [Ralstonia pickettii 12J...   165   3e-39
ref|YP_004294754.1| urease, beta subunit [Nitrosomonas sp. AL212...   162   1e-38

>ref|YP_003778094.1| urease subunit beta [Herbaspirillum seropedicae SmR1]
 gb|ADJ66186.1| urease (beta subunit) protein [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 112/114 (98%), Positives = 112/114 (98%)

Query: 18  MIPGEMLVEPGDIELNVGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 77
           MIPGEMLVEPGDIELN GRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR
Sbjct: 1   MIPGEMLVEPGDIELNTGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 60

Query: 78  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKLKAQHGNVKKGQTK 131
           LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKLKAQHGN KKGQTK
Sbjct: 61  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKLKAQHGNDKKGQTK 114


>ref|YP_001353503.1| urease beta subunit [Janthinobacterium sp. Marseille]
 sp|A6SZ06|URE2_JANMA RecName: Full=Urease subunit beta; AltName: Full=Urea
           amidohydrolase subunit beta
 gb|ABR89059.1| urease beta subunit [Janthinobacterium sp. Marseille]
          Length = 107

 Score =  179 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/106 (83%), Positives = 93/106 (87%)

Query: 18  MIPGEMLVEPGDIELNVGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 77
           MIPGEMLVEPGDIELNVGR T TV VANSGDRPIQVGSHFHFYETNPAL+F+R   YGMR
Sbjct: 1   MIPGEMLVEPGDIELNVGRATATVKVANSGDRPIQVGSHFHFYETNPALKFDRAIGYGMR 60

Query: 78  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKLKAQHG 123
           LNI AGTAVRFEPGQERTVELVALAGDR+VYGFN  VMG L  + G
Sbjct: 61  LNITAGTAVRFEPGQERTVELVALAGDRKVYGFNGKVMGALDKKEG 106


>ref|YP_004753502.1| urease subunit beta [Collimonas fungivorans Ter331]
 gb|AEK62679.1| Urease beta subunit [Collimonas fungivorans Ter331]
          Length = 107

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 83/101 (82%), Positives = 88/101 (87%)

Query: 18  MIPGEMLVEPGDIELNVGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 77
           MIPGEM ++ GDIELNVGR   +VTVANSGDRPIQ+GSHFHFYE NPAL FERE AYGMR
Sbjct: 1   MIPGEMQIQSGDIELNVGRRCNSVTVANSGDRPIQIGSHFHFYEVNPALLFEREDAYGMR 60

Query: 78  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKL 118
           LNIAAGTAVRFEPGQ+RTVELV LAGDR VYGFN  VMG L
Sbjct: 61  LNIAAGTAVRFEPGQKRTVELVELAGDRIVYGFNGKVMGAL 101


>ref|YP_001899751.1| urease subunit beta [Ralstonia pickettii 12J]
 ref|ZP_07676614.1| urease, beta subunit [Ralstonia sp. 5_7_47FAA]
 sp|B2U7N2|URE2_RALPJ RecName: Full=Urease subunit beta; AltName: Full=Urea
           amidohydrolase subunit beta
 gb|ACD27319.1| urease, beta subunit [Ralstonia pickettii 12J]
 gb|EFP65186.1| urease, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 101

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/101 (81%), Positives = 90/101 (89%)

Query: 18  MIPGEMLVEPGDIELNVGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 77
           MIPGE+L + GD+ELN GRPTVTVTVAN+GDRP+Q+GSH+HFYE N ALRF+REAA G R
Sbjct: 1   MIPGELLPQDGDLELNAGRPTVTVTVANTGDRPVQIGSHYHFYEVNDALRFDREAARGFR 60

Query: 78  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKL 118
           LNIAAGTAVRFEPGQERTVELVALAGDR VYGF   VMGKL
Sbjct: 61  LNIAAGTAVRFEPGQERTVELVALAGDRVVYGFAGRVMGKL 101


>ref|YP_004294754.1| urease, beta subunit [Nitrosomonas sp. AL212]
 gb|ADZ26592.1| urease, beta subunit [Nitrosomonas sp. AL212]
          Length = 106

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/102 (77%), Positives = 89/102 (87%)

Query: 18  MIPGEMLVEPGDIELNVGRPTVTVTVANSGDRPIQVGSHFHFYETNPALRFEREAAYGMR 77
           MIPGE+  E G+IELNVGR T T+TV+N GDRPIQ+GSHFHFYE N A++F+REAAYGMR
Sbjct: 5   MIPGEVFTEAGEIELNVGRNTKTLTVSNGGDRPIQIGSHFHFYEVNSAMKFDREAAYGMR 64

Query: 78  LNIAAGTAVRFEPGQERTVELVALAGDRRVYGFNALVMGKLK 119
           LNI AGTA+RFEPGQERT+ELV LAGDR VYGFN  VMGKLK
Sbjct: 65  LNIMAGTAIRFEPGQERTIELVELAGDRIVYGFNQKVMGKLK 106