BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1802.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778093.1| urease subunit gamma [Herbaspirillum seroped...   174   3e-42
ref|ZP_08506405.1| Urease gamma subunit [Methyloversatilis unive...   169   2e-40
ref|YP_003674324.1| urease subunit gamma [Methylotenera versatil...   166   9e-40
ref|YP_003050478.1| urease subunit gamma [Methylovorus glucosetr...   165   2e-39
ref|YP_001580669.1| urease subunit gamma [Burkholderia multivora...   164   5e-39

>ref|YP_003778093.1| urease subunit gamma [Herbaspirillum seropedicae SmR1]
 gb|ADJ66185.1| urease (gamma subunit) protein [Herbaspirillum seropedicae SmR1]
          Length = 100

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MELTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALITAAIMEGARDGKTVAELMSEG 60
           MELTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALITAAIMEGARDGKTVAELMSEG
Sbjct: 1   MELTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALITAAIMEGARDGKTVAELMSEG 60

Query: 61  TTILTRDDVMEGVPEMIPDIQVEATFPDGSKLVTVHHPIP 100
           TTILTRDDVMEGVPEMIPDIQVEATFPDGSKLVTVHHPIP
Sbjct: 61  TTILTRDDVMEGVPEMIPDIQVEATFPDGSKLVTVHHPIP 100


>ref|ZP_08506405.1| Urease gamma subunit [Methyloversatilis universalis FAM5]
 gb|EGK70104.1| Urease gamma subunit [Methyloversatilis universalis FAM5]
          Length = 100

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/100 (91%), Positives = 98/100 (98%)

Query: 1   MELTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALITAAIMEGARDGKTVAELMSEG 60
           MELTPREKDKLLIFTAALLAERR+ARGLKLNYPEAVA ITAAIMEGARDG++VAELMS G
Sbjct: 1   MELTPREKDKLLIFTAALLAERRRARGLKLNYPEAVAYITAAIMEGARDGRSVAELMSHG 60

Query: 61  TTILTRDDVMEGVPEMIPDIQVEATFPDGSKLVTVHHPIP 100
           TT+L+RDDVMEGVPEMIPDIQ+EATFPDG+KLVTVHHPIP
Sbjct: 61  TTLLSRDDVMEGVPEMIPDIQIEATFPDGTKLVTVHHPIP 100


>ref|YP_003674324.1| urease subunit gamma [Methylotenera versatilis 301]
 gb|ADI29747.1| urease, gamma subunit [Methylotenera versatilis 301]
          Length = 100

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 89/100 (89%), Positives = 97/100 (97%)

Query: 1   MELTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALITAAIMEGARDGKTVAELMSEG 60
           MELTPREKDKLLIFTA LLAERRKARGLKLNYPE++ALI+AAIMEGARDG+TVAELMS G
Sbjct: 1   MELTPREKDKLLIFTAGLLAERRKARGLKLNYPESIALISAAIMEGARDGRTVAELMSYG 60

Query: 61  TTILTRDDVMEGVPEMIPDIQVEATFPDGSKLVTVHHPIP 100
           TT+LTRDDVMEG+ EMIPDIQ+EATFPDG+KLVTVHHPIP
Sbjct: 61  TTLLTRDDVMEGIAEMIPDIQIEATFPDGTKLVTVHHPIP 100


>ref|YP_003050478.1| urease subunit gamma [Methylovorus glucosetrophus SIP3-4]
 ref|YP_004039148.1| urease subunit gamma [Methylovorus sp. MP688]
 gb|ACT49951.1| urease, gamma subunit [Methylovorus glucosetrophus SIP3-4]
 gb|ADQ83912.1| urease, gamma subunit [Methylovorus sp. MP688]
          Length = 100

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/100 (89%), Positives = 96/100 (96%)

Query: 1   MELTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALITAAIMEGARDGKTVAELMSEG 60
           MEL+PREKDKLLIFTAALLAERRKARGLKLNYPE+VA I+AAIMEGARDGKTVAELM  G
Sbjct: 1   MELSPREKDKLLIFTAALLAERRKARGLKLNYPESVAFISAAIMEGARDGKTVAELMGYG 60

Query: 61  TTILTRDDVMEGVPEMIPDIQVEATFPDGSKLVTVHHPIP 100
            T+LTRDDVMEGVPEMIP+IQ+EATFPDG+KLVTVHHPIP
Sbjct: 61  ATLLTRDDVMEGVPEMIPEIQIEATFPDGTKLVTVHHPIP 100


>ref|YP_001580669.1| urease subunit gamma [Burkholderia multivorans ATCC 17616]
 ref|ZP_02883219.1| urease, gamma subunit [Burkholderia graminis C4D1M]
 ref|YP_001945245.1| urease subunit gamma [Burkholderia multivorans ATCC 17616]
 ref|ZP_03586737.1| urease, gamma subunit [Burkholderia multivorans CGD1]
 ref|YP_003906086.1| urease subunit gamma [Burkholderia sp. CCGE1003]
 ref|YP_004227215.1| urease subunit gamma [Burkholderia sp. CCGE1001]
 sp|A9AF70|URE3_BURM1 RecName: Full=Urease subunit gamma; AltName: Full=Urea
           amidohydrolase subunit gamma
 gb|ABX16172.1| urease, gamma subunit [Burkholderia multivorans ATCC 17616]
 gb|EDT11503.1| urease, gamma subunit [Burkholderia graminis C4D1M]
 dbj|BAG42709.1| urease gamma subunit [Burkholderia multivorans ATCC 17616]
 gb|EED99024.1| urease, gamma subunit [Burkholderia multivorans CGD1]
 gb|ADN56795.1| urease, gamma subunit [Burkholderia sp. CCGE1003]
 gb|ADX54155.1| urease, gamma subunit [Burkholderia sp. CCGE1001]
          Length = 100

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 90/100 (90%), Positives = 96/100 (96%)

Query: 1   MELTPREKDKLLIFTAALLAERRKARGLKLNYPEAVALITAAIMEGARDGKTVAELMSEG 60
           M+LTPREKDKLLIFTAALLAERR+ARGLKLNYPEAVA ITAA+ME ARDGKTVAE+M  G
Sbjct: 1   MKLTPREKDKLLIFTAALLAERRRARGLKLNYPEAVAFITAALMEAARDGKTVAEVMHYG 60

Query: 61  TTILTRDDVMEGVPEMIPDIQVEATFPDGSKLVTVHHPIP 100
           TT+LTRDDVMEGVPEMIPDIQVEATFPDG+KLVTVHHPIP
Sbjct: 61  TTLLTRDDVMEGVPEMIPDIQVEATFPDGTKLVTVHHPIP 100