BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1801.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778092.1| urease accessory UreD protein [Herbaspirillu... 521 e-146 ref|YP_001353501.1| urease accessory protein UreD [Janthinobacte... 382 e-104 ref|YP_004753500.1| urease accessory protein [Collimonas fungivo... 331 8e-89 ref|ZP_08276124.1| Urease accessory protein UreD [Oxalobacterace... 320 2e-85 ref|YP_004294756.1| Urease accessory protein UreD [Nitrosomonas ... 314 1e-83 >ref|YP_003778092.1| urease accessory UreD protein [Herbaspirillum seropedicae SmR1] gb|ADJ66184.1| urease accessory UreD protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 277/287 (96%), Positives = 283/287 (98%) Query: 33 MPAPATPGAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAII 92 MPAPATPGAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAII Sbjct: 1 MPAPATPGAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAII 60 Query: 93 VHPPGGIVGGDQLSITAEVGQRAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWL 152 VHPPGGIVGGDQLSITAE G+RAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWL Sbjct: 61 VHPPGGIVGGDQLSITAEAGERAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWL 120 Query: 153 PQETIFFDGADVRMEHEVTLAADAAYLGAEILCFGRTASGETFDTGAVSQRTSIRRGGKL 212 PQETIFFDGA+VRMEHEVTLAA+AAYLGAEILCFGRTASGETF+TGA+SQRTSIRRGGKL Sbjct: 121 PQETIFFDGAEVRMEHEVTLAANAAYLGAEILCFGRTASGETFNTGAISQRTSIRRGGKL 180 Query: 213 VWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALLGRLRETIGALQLEGRSGA 272 VWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALLG LRETIGALQLEGRSGA Sbjct: 181 VWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALLGHLRETIGALQLEGRSGA 240 Query: 273 TLMKQVLIARYMGPSSLVARQWLHAAWHVLRPAVAGKDAAIPRIWNT 319 TLMKQVLIARYMG SSLVARQWLHAAWHVLRPAV GK+AAIPRIWNT Sbjct: 241 TLMKQVLIARYMGQSSLVARQWLHAAWHVLRPAVTGKEAAIPRIWNT 287 >ref|YP_001353501.1| urease accessory protein UreD [Janthinobacterium sp. Marseille] sp|A6SZ04|URED_JANMA RecName: Full=Urease accessory protein ureD gb|ABR89778.1| urease accessory protein UreD [Janthinobacterium sp. Marseille] Length = 296 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 193/272 (70%), Positives = 217/272 (79%) Query: 48 DQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAIIVHPPGGIVGGDQLSI 107 DQARL+L F DD GTTR+ R HFGPLRVQK LYPE P++CHAIIVHPPGGIVGGDQL+I Sbjct: 25 DQARLSLAFTDDAGTTRMTERSHFGPLRVQKTLYPEHPAVCHAIIVHPPGGIVGGDQLTI 84 Query: 108 TAEVGQRAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWLPQETIFFDGADVRME 167 TA VG RAHALLTTPGAGKWYRANGQ S+Q V L+ A A LEWLPQETIFF+ ADVR+E Sbjct: 85 TARVGDRAHALLTTPGAGKWYRANGQLSQQQVSLEVGADAALEWLPQETIFFNEADVRLE 144 Query: 168 HEVTLAADAAYLGAEILCFGRTASGETFDTGAVSQRTSIRRGGKLVWFEQGRLQAEAGAM 227 H VTLAADA Y+G EILCFGRTASGETFD+G V+QRTSIRRGGKL+WFEQG LQA + +M Sbjct: 145 HNVTLAADARYIGGEILCFGRTASGETFDSGRVAQRTSIRRGGKLLWFEQGALQARSTSM 204 Query: 228 QGPLALDGQTICGTLIAVGDGMDAALLGRLRETIGALQLEGRSGATLMKQVLIARYMGPS 287 PL+L G T+C TLIAVG M+ A L LRE AL GRSGAT MKQVL+ARY+G S Sbjct: 205 HSPLSLAGYTVCATLIAVGKTMNGAFLNELREESSALAQGGRSGATQMKQVLVARYLGHS 264 Query: 288 SLVARQWLHAAWHVLRPAVAGKDAAIPRIWNT 319 S AR W+ AW +RP + +DA IPRIWNT Sbjct: 265 SETARLWMTRAWQRIRPELMQRDAVIPRIWNT 296 >ref|YP_004753500.1| urease accessory protein [Collimonas fungivorans Ter331] gb|AEK62677.1| Urease accessory protein [Collimonas fungivorans Ter331] Length = 306 Score = 331 bits (849), Expect = 8e-89, Method: Composition-based stats. Identities = 180/306 (58%), Positives = 217/306 (70%), Gaps = 7/306 (2%) Query: 21 MKRLPGHPEPAS----MPAPATP--GAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPL 74 M P PAS +PA P P+R A +QA L+L FADD+GTTRL+ R H+GPL Sbjct: 1 MDNFTAQPMPASAELALPATLPPILSEPVRGADNQAWLSLRFADDRGTTRLLDRAHYGPL 60 Query: 75 RVQKPLYPEDPSICHAIIVHPPGGIVGGDQLSITAEVGQRAHALLTTPGAGKWYRANGQS 134 RVQK LYPE PSICHAIIVHPPGG+VGGDQL+I A VG AHA LTTPGA KWY+ANG+ Sbjct: 61 RVQKALYPEHPSICHAIIVHPPGGVVGGDQLTIKAGVGAGAHAFLTTPGAAKWYQANGKL 120 Query: 135 SRQAVRLDAAAGATLEWLPQETIFFDGADVRMEHEVTLAADAAYLGAEILCFGRTASGET 194 S+Q VRL A ATLEWLPQETIFFD A+V + HEV L +A Y+G EILCFGRTASGET Sbjct: 121 SQQQVRLQLADSATLEWLPQETIFFDQAEVALTHEVELQGEARYIGGEILCFGRTASGET 180 Query: 195 FDTGAVSQRTSIRRGGKLVWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALL 254 F+ G +SQ+TSIRR GKL+WFEQG L + AM L L G T+C TL+ G A+L+ Sbjct: 181 FNRGRISQQTSIRRDGKLLWFEQGMLSGGSAAMHNRLGLAGCTVCATLMVAGKPFSASLV 240 Query: 255 GRLRETIGALQLEGRS-GATLMKQVLIARYMGPSSLVARQWLHAAWHVLRPAVAGKDAAI 313 +LRE L E S GA+ +K VL+ R++G SS +ARQW+ AW ++RP + G +A I Sbjct: 241 QQLRELASQLAGERASVGASQLKSVLVLRHLGHSSELARQWMMQAWQLIRPQLLGHEALI 300 Query: 314 PRIWNT 319 PRIWNT Sbjct: 301 PRIWNT 306 >ref|ZP_08276124.1| Urease accessory protein UreD [Oxalobacteraceae bacterium IMCC9480] gb|EGF30400.1| Urease accessory protein UreD [Oxalobacteraceae bacterium IMCC9480] Length = 282 Score = 320 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 155/271 (57%), Positives = 195/271 (71%), Gaps = 5/271 (1%) Query: 49 QARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAIIVHPPGGIVGGDQLSIT 108 QARL+LGF +D GTTRL R+H GPLRVQK LYPE PS+CHA+IVHPPGG+VGGDQL I Sbjct: 17 QARLSLGFVNDAGTTRLTGREHVGPLRVQKALYPEHPSVCHAVIVHPPGGVVGGDQLDIA 76 Query: 109 AEVGQRAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWLPQETIFFDGADVRMEH 168 VG A ++TPGA KWYRANG SRQ VRL+ AAGA+LEWLPQETIFF+ A VR++ Sbjct: 77 VRVGCDAAVFISTPGAAKWYRANGHVSRQTVRLEVAAGASLEWLPQETIFFNNAHVRLDS 136 Query: 169 EVTLAADAAYLGAEILCFGRTASGETFDTGAVSQRTSIRRGGKLVWFEQGRLQAEAGAMQ 228 +TL DA Y G +ILCFGRTASGETF+ G ++Q ++I R GKL+WFEQGR++ M Sbjct: 137 AITLQGDATYFGCDILCFGRTASGETFNAGTITQHSTILRDGKLIWFEQGRIEGTGSVMH 196 Query: 229 GPLALDGQTICGTLIAVGDGMDAALLGRLRETIGALQLEGRSGATLMKQVLIARYMGPSS 288 PL L G+T+C TL+ G + + L LRET+G + G T MK +L+ R++G SS Sbjct: 197 SPLGLAGRTVCATLLVAGKSLTPSALTTLRETLGP-----QVGITQMKSILVVRHLGNSS 251 Query: 289 LVARQWLHAAWHVLRPAVAGKDAAIPRIWNT 319 VAR+ + AW LRP + ++A +PRIWNT Sbjct: 252 EVARRLMMQAWQALRPLLLAREAVVPRIWNT 282 >ref|YP_004294756.1| Urease accessory protein UreD [Nitrosomonas sp. AL212] gb|ADZ26594.1| Urease accessory protein UreD [Nitrosomonas sp. AL212] Length = 315 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 151/313 (48%), Positives = 202/313 (64%), Gaps = 6/313 (1%) Query: 13 LPRNEEPGMKRLPGHPEPASMPAP-----ATPGAPLRHAPDQARLALGFADDKGTTRLMR 67 LP E + P P+ P +T A H P QA+L+L FA+ G TRL+ Sbjct: 3 LPTYSEESEIKQRHFPTPSDFKQPTDAVMSTSNAASEHKPLQAKLSLKFAEMDGVTRLVE 62 Query: 68 RQHFGPLRVQKPLYPEDPSICHAIIVHPPGGIVGGDQLSITAEVGQRAHALLTTPGAGKW 127 R+HFGPL VQKP YPE ICH +I+HPPGG+VGGDQL I+A+V A+A +TTPGA KW Sbjct: 63 REHFGPLLVQKPFYPEGQKICHVVIIHPPGGVVGGDQLEISAQVDASANAQITTPGAAKW 122 Query: 128 YRANGQSSRQAVRLDAAAGATLEWLPQETIFFDGADVRMEHEVTLAADAAYLGAEILCFG 187 Y+ANG +S Q +R+ G +LEW+PQETIF++ A+V ++H+V L DA Y+G EILCFG Sbjct: 123 YKANGHTSHQKIRIYVRKGGSLEWVPQETIFYNNANVEIDHQVILEDDAVYVGCEILCFG 182 Query: 188 RTASGETFDTGAVSQRTSIRRGGKLVWFEQGRLQAEAGAMQGPLALDGQTICGTLIAVGD 247 RTA GETF G + QRTSI+R KL+W EQ RL E+ AM G LAL G+T+C TLI G Sbjct: 183 RTAYGETFSNGQIKQRTSIKRNNKLIWLEQIRLLGESSAMNGALALSGKTVCATLILTGK 242 Query: 248 GMDAALLGRLRETIGAL-QLEGRSGATLMKQVLIARYMGPSSLVARQWLHAAWHVLRPAV 306 + +++ RE + + + G + +K ++ RY+G SS VARQ + W +LRP + Sbjct: 243 TISQSMIDLAREETNKITKRADQVGMSQLKSAVVVRYLGDSSEVARQVMLCVWGLLRPEL 302 Query: 307 AGKDAAIPRIWNT 319 G A +PR+WNT Sbjct: 303 IGSAAIVPRMWNT 315