BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1798.p (376 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778089.1| urea transport system, permease component pr... 658 0.0 ref|YP_001353498.1| ABC-type branched-chain amino acid transport... 599 e-169 ref|YP_004753497.1| urea ABC transporter permease [Collimonas fu... 533 e-149 ref|YP_001628900.1| branched chain amino acid ABC transporter pe... 494 e-137 gb|EGP47552.1| urea ABC transporter permease protein UrtC 2 [Ach... 486 e-135 >ref|YP_003778089.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] gb|ADJ66181.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 368/376 (97%), Positives = 373/376 (99%) Query: 1 MSTMIMRPSLFNRPSWTGIVICTIVLALLPVCNLLFPADSALHVSSYTIALVGKFMCYAM 60 MSTMIMRPSLFNRP+WTGIVICTIVLALLPVCNLLFPA SALHVSSYT+ALVGKFMCYAM Sbjct: 1 MSTMIMRPSLFNRPAWTGIVICTIVLALLPVCNLLFPAGSALHVSSYTVALVGKFMCYAM 60 Query: 61 AALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLNWKAY 120 AALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQS+LPDFMVFLNWKAY Sbjct: 61 AALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSDLPDFMVFLNWKAY 120 Query: 121 PWYWWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRN 180 PWYWWMTDHFWF+MLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRN Sbjct: 121 PWYWWMTDHFWFAMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRN 180 Query: 181 DTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGV 240 DTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTL LLFGALVLCRMIVTSKLGRVLQGV Sbjct: 181 DTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTLGLLFGALVLCRMIVTSKLGRVLQGV 240 Query: 241 RDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWA 300 RDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWA Sbjct: 241 RDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWA 300 Query: 301 AVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFK 360 AVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFK Sbjct: 301 AVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFK 360 Query: 361 KRDAASAEGSASKEAA 376 KRDA +AEGSASKEAA Sbjct: 361 KRDAVAAEGSASKEAA 376 >ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89856.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 328/364 (90%), Positives = 349/364 (95%) Query: 3 TMIMRPSLFNRPSWTGIVICTIVLALLPVCNLLFPADSALHVSSYTIALVGKFMCYAMAA 62 T I++PSLF+RP+W GIV C +VLALLP+ NL FPAD ALH+SSYTIALVGKFMCYAMAA Sbjct: 2 TTILKPSLFSRPAWIGIVFCAVVLALLPIMNLCFPADHALHISSYTIALVGKFMCYAMAA 61 Query: 63 LALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLNWKAYPW 122 LALDLVWGYTGILSLGHGVFFALGGYAHGMYLMR+IGRDGVYQSNLPDFMVFLNWK YPW Sbjct: 62 LALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRSIGRDGVYQSNLPDFMVFLNWKEYPW 121 Query: 123 YWWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDT 182 YWWMT+HFWF+MLLVVLVPGLLAF+FGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDT Sbjct: 122 YWWMTEHFWFAMLLVVLVPGLLAFIFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDT 181 Query: 183 GFGGNNGFTDFKRILGFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRD 242 GFGGNNGFTDFKRILGFTIT P+TKAVLYLVTLA L AL +CR IVTSKLGRVLQGVRD Sbjct: 182 GFGGNNGFTDFKRILGFTITDPSTKAVLYLVTLAFLLAALFVCRAIVTSKLGRVLQGVRD 241 Query: 243 SESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAV 302 SESRLMFIGYNPLWFKLFVWTLSAV+CGIAGALYVPQVGIINPSEMSPANSIEMVIWAAV Sbjct: 242 SESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVGIINPSEMSPANSIEMVIWAAV 301 Query: 303 GGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKR 362 GGRG+L+GPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFI VTLF+PQGILGLV+KFKK+ Sbjct: 302 GGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFIFVTLFMPQGILGLVKKFKKQ 361 Query: 363 DAAS 366 +AA+ Sbjct: 362 EAAT 365 >ref|YP_004753497.1| urea ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK62674.1| Urea ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 381 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 311/362 (85%), Positives = 338/362 (93%) Query: 7 RPSLFNRPSWTGIVICTIVLALLPVCNLLFPADSALHVSSYTIALVGKFMCYAMAALALD 66 + LF+RP+W+GI+ C+++LALLPV NLLFPA LH+SSYT+ALVGKFMCYAMAALALD Sbjct: 18 KTPLFSRPAWSGIIFCSVILALLPVLNLLFPAGHVLHISSYTVALVGKFMCYAMAALALD 77 Query: 67 LVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLNWKAYPWYWWM 126 LVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFL+WK YPW+W + Sbjct: 78 LVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLDWKTYPWFWSL 137 Query: 127 TDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTGFGG 186 TDHFW+ M LVVLVPG+LAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRN+TGFGG Sbjct: 138 TDHFWYCMALVVLVPGVLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNNTGFGG 197 Query: 187 NNGFTDFKRILGFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDSESR 246 NNGFTDFKRILG++ITAP+TKAVLYL+TLA L GAL+LCR IVTSKLGRVLQ VRDSESR Sbjct: 198 NNGFTDFKRILGYSITAPSTKAVLYLITLAFLLGALLLCRWIVTSKLGRVLQAVRDSESR 257 Query: 247 LMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRG 306 LMFIGYNPLWFKLFVWTLSAV+CGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRG Sbjct: 258 LMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVGGRG 317 Query: 307 TLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKRDAAS 366 +L+GPIIGAF+VNGLKSWFT AFPDLWLYALGLIFILVTLF+PQGILGL K K R + Sbjct: 318 SLLGPIIGAFSVNGLKSWFTGAFPDLWLYALGLIFILVTLFMPQGILGLADKLKIRFKSG 377 Query: 367 AE 368 E Sbjct: 378 KE 379 >ref|YP_001628900.1| branched chain amino acid ABC transporter permease [Bordetella petrii DSM 12804] emb|CAP40629.1| Branched-chain amino acid transport system, permease component [Bordetella petrii] Length = 373 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 282/362 (77%), Positives = 315/362 (87%) Query: 1 MSTMIMRPSLFNRPSWTGIVICTIVLALLPVCNLLFPADSALHVSSYTIALVGKFMCYAM 60 ++ + R LF+ +W G+ I T +LA LP NL+FP ALHVS+Y +AL+GKFMCYA+ Sbjct: 6 LNPALARRPLFSARAWAGLAIATALLAALPCLNLVFPPGHALHVSAYAVALLGKFMCYAL 65 Query: 61 AALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLNWKAY 120 AALALDLVWGY GILSLGHG+FFALGGYAHGMYLMRAIGRDGVYQS++PDFMVFLNWKAY Sbjct: 66 AALALDLVWGYAGILSLGHGLFFALGGYAHGMYLMRAIGRDGVYQSDVPDFMVFLNWKAY 125 Query: 121 PWYWWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRN 180 PWYW TDHFW++MLLVVLVPG LAF+FGYFAFRSRIKGVYFSIITQA+TFA MLLFFRN Sbjct: 126 PWYWAFTDHFWYAMLLVVLVPGGLAFLFGYFAFRSRIKGVYFSIITQALTFAAMLLFFRN 185 Query: 181 DTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGV 240 DTGFGGNNGFTDFKRILGF ITAPAT+A LY VTLA+LFGALVL R + SKLGRVL V Sbjct: 186 DTGFGGNNGFTDFKRILGFDITAPATRAGLYWVTLAVLFGALVLARAVTQSKLGRVLTAV 245 Query: 241 RDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWA 300 RD+ESRL FIGY PL FKLFVWTLSAV+CG+AGALYVPQVGIINP EMS NSIEMVIW Sbjct: 246 RDAESRLRFIGYEPLGFKLFVWTLSAVMCGVAGALYVPQVGIINPGEMSTENSIEMVIWV 305 Query: 301 AVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFK 360 A GGRGTLIGPIIGA VNGLK+WFT+ FP+ WLYALGLIF+LVTL LPQGI+GLV+++ Sbjct: 306 ATGGRGTLIGPIIGAGAVNGLKTWFTSVFPEFWLYALGLIFVLVTLLLPQGIVGLVRRWM 365 Query: 361 KR 362 R Sbjct: 366 AR 367 >gb|EGP47552.1| urea ABC transporter permease protein UrtC 2 [Achromobacter xylosoxidans AXX-A] Length = 375 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 274/359 (76%), Positives = 306/359 (85%) Query: 4 MIMRPSLFNRPSWTGIVICTIVLALLPVCNLLFPADSALHVSSYTIALVGKFMCYAMAAL 63 ++ R LFN +W + ++LAL+P+ NL FPA LH+S+Y +AL+GKFMCYA+AAL Sbjct: 11 LLARRPLFNGRAWAALGAGVLLLALVPLLNLAFPAGHPLHISAYAVALLGKFMCYALAAL 70 Query: 64 ALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLNWKAYPWY 123 ALDLVWGY GILSLGHG+FFALGGYAHGMYLMRAIG+DGVYQS LPDFMVFL+WK YPWY Sbjct: 71 ALDLVWGYAGILSLGHGLFFALGGYAHGMYLMRAIGQDGVYQSRLPDFMVFLDWKDYPWY 130 Query: 124 WWMTDHFWFSMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFFRNDTG 183 W TDHF ++MLLVVLVPG LAFVFGYFAFRSRIKGVYFSIITQA+TFA MLLFFRNDTG Sbjct: 131 WAFTDHFAYAMLLVVLVPGALAFVFGYFAFRSRIKGVYFSIITQALTFAAMLLFFRNDTG 190 Query: 184 FGGNNGFTDFKRILGFTITAPATKAVLYLVTLALLFGALVLCRMIVTSKLGRVLQGVRDS 243 FGGNNGFTDFKRILGF ITAP T+A LY +TLA L GALVL R + SKLGRVL VRD+ Sbjct: 191 FGGNNGFTDFKRILGFDITAPGTRAALYWITLAALVGALVLARAVTQSKLGRVLTAVRDA 250 Query: 244 ESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVIWAAVG 303 ESRL FIGY+PL FKLFVWTLSAV+CGIAGALYVPQVGIINPSEMS NSIEMVIW A G Sbjct: 251 ESRLRFIGYDPLGFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSTENSIEMVIWVATG 310 Query: 304 GRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQKFKKR 362 GRGTLIGPIIGA VNGLK+WFT+ P+ WLYALGLIF+LVTLFLP GI+GL ++ R Sbjct: 311 GRGTLIGPIIGAGAVNGLKTWFTSVLPEFWLYALGLIFVLVTLFLPTGIVGLARRLAAR 369