BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1797.p (538 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillu... 946 0.0 ref|YP_001353497.1| ABC-type branched-chain amino acid transport... 831 0.0 ref|YP_004753496.1| urea ABC transporter permease [Collimonas fu... 812 0.0 ref|ZP_06689559.1| branched-chain amino acid ABC superfamily ATP... 599 e-169 gb|EGP47551.1| urea ABC transporter permease protein UrtB 2 [Ach... 593 e-167 >ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66180.1| ABC-type urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 538 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 520/538 (96%), Positives = 529/538 (98%) Query: 1 MKPAIQFLRGLLATWLCVHALGAFAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALK 60 MKPAIQFLRGLLATWLCVHAL A AAIDPALLKPLGGDDPDARIDAVNQIAALANDDALK Sbjct: 1 MKPAIQFLRGLLATWLCVHALAASAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALK 60 Query: 61 ILNALNSDALYVTPAGDVLIVDDAGKAFNPATDQTGPAPDDAEGITVNNRLRGAVDGALS 120 ILNALNSDALYVTPAGDVLIVD+AG+AFNPATD++GPAPDDAEGITVNNRLRGAVDGALS Sbjct: 61 ILNALNSDALYVTPAGDVLIVDEAGQAFNPATDKSGPAPDDAEGITVNNRLRGAVDGALS 120 Query: 121 GLKLLSPQRDQRLAAAGELLKNADPAQIPLIEKALAKESDPQIKDVLQQVQATANLHSTD 180 GLKLLSPQR+QRLAAA ELLKNADPAQIPLI KALAKESD QIKDVLQQVQATANLHS D Sbjct: 121 GLKLLSPQREQRLAAANELLKNADPAQIPLIVKALAKESDAQIKDVLQQVQATANLHSPD 180 Query: 181 PAARRAAVKKLAETTNASLKPVLENMLAKNPDGSYVEADEGVRIEAVRTLSALDRHLAIV 240 PAARRAAVK LA+TTNASLKP LENMLAK+PDGSYVE DEGVR+EAVRTL+ALDRHLAIV Sbjct: 181 PAARRAAVKTLADTTNASLKPALENMLAKHPDGSYVEPDEGVRVEAVRTLAALDRHLAIV 240 Query: 241 DFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP 300 DFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP Sbjct: 241 DFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP 300 Query: 301 GAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFG 360 GAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFG Sbjct: 301 GAIDAYLVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFG 360 Query: 361 AQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQ 420 AQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQ Sbjct: 361 AQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQ 420 Query: 421 NRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGG 480 NRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGG Sbjct: 421 NRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGG 480 Query: 481 VGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 VGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE Sbjct: 481 VGQLAGTVIAAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 >ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] gb|ABR89024.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 456/529 (86%), Positives = 484/529 (91%), Gaps = 1/529 (0%) Query: 10 GLLATWLCVHALGAFAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDA 69 G+L+ WLC A+ A AAIDPALLKPL GDDPDARI AV +IAALAN DA KIL A+N+DA Sbjct: 11 GMLSLWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTEIAALANQDAQKILQAINNDA 70 Query: 70 LYVTPAGDVLIVDDAGKAFNPATDQTGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQR 129 LY TPAGDV I+D AFNPATD+TGPAPDDAEGITVNNRLRGAV+GALSGL+L + R Sbjct: 71 LYATPAGDVFIID-GSDAFNPATDKTGPAPDDAEGITVNNRLRGAVEGALSGLQLFAQDR 129 Query: 130 DQRLAAAGELLKNADPAQIPLIEKALAKESDPQIKDVLQQVQATANLHSTDPAARRAAVK 189 + RL AA +LLK ADPAQIPLI KAL KESDP I+++LQQV ATANLH+ D A R+AAVK Sbjct: 130 NARLTAANDLLKTADPAQIPLINKALEKESDPAIRELLQQVVATANLHAPDAATRQAAVK 189 Query: 190 KLAETTNASLKPVLENMLAKNPDGSYVEADEGVRIEAVRTLSALDRHLAIVDFAGKLFYG 249 LA T+NASLKP+LE MLAKNPDGSYVE D GVR EAV TLSAL+RHL I +F GKLFYG Sbjct: 190 TLANTSNASLKPILEQMLAKNPDGSYVEPDAGVRSEAVNTLSALNRHLTITEFVGKLFYG 249 Query: 250 VSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVV 309 +SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP AIDAYL+V Sbjct: 250 ISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPEAIDAYLLV 309 Query: 310 ALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANP 369 ALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISL+LMQGVRSIFGAQNVEVANP Sbjct: 310 ALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLILMQGVRSIFGAQNVEVANP 369 Query: 370 SWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVG 429 SWMSGGVTVLGSLVLSYNRIVI+FFALFVV AVWLILNKTRLGLFVRAV QNRRMA CVG Sbjct: 370 SWMSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMAACVG 429 Query: 430 VSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVI 489 VSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVI Sbjct: 430 VSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVI 489 Query: 490 AAFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 AAFGLGEVNKFLEP+AGAVLAKIAILVFII+FIQKRPQGLFALKGRSVE Sbjct: 490 AAFGLGEVNKFLEPVAGAVLAKIAILVFIIIFIQKRPQGLFALKGRSVE 538 >ref|YP_004753496.1| urea ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK62673.1| Urea ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 540 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 446/528 (84%), Positives = 477/528 (90%), Gaps = 1/528 (0%) Query: 11 LLATWLCVHALGAFAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDAL 70 LL LC+H A A IDPALLKPL GDDPDARI AVNQIAALANDDALKILNALN+DAL Sbjct: 14 LLIASLCLHITLAHAKIDPALLKPLAGDDPDARIVAVNQIAALANDDALKILNALNTDAL 73 Query: 71 YVTPAGDVLIVDDAGKAFNPATDQTGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQRD 130 Y P G VLIV D +AFNPATDQT PDDAEGI+VNNRLRG V+GALSGLKL S R+ Sbjct: 74 YARPDGTVLIVGDT-QAFNPATDQTLATPDDAEGISVNNRLRGVVEGALSGLKLFSANRN 132 Query: 131 QRLAAAGELLKNADPAQIPLIEKALAKESDPQIKDVLQQVQATANLHSTDPAARRAAVKK 190 QR++AA EL+K ADPAQIPL+ KAL +ESDP+I+ VLQQV ATANLHS D A R+AAV+ Sbjct: 133 QRMSAATELIKTADPAQIPLVSKALHQESDPEIQAVLQQVIATANLHSADAATRKAAVQT 192 Query: 191 LAETTNASLKPVLENMLAKNPDGSYVEADEGVRIEAVRTLSALDRHLAIVDFAGKLFYGV 250 LA +TNA+L+P L+N+L KNPDGSY+E D VRIEAVRTL LDRHLA VDF GK+FYG+ Sbjct: 193 LAGSTNANLRPALQNLLNKNPDGSYIEPDPAVRIEAVRTLGVLDRHLATVDFIGKVFYGI 252 Query: 251 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVA 310 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQL+FR++FPGA+D YL+VA Sbjct: 253 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLLFRQYFPGALDGYLLVA 312 Query: 311 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPS 370 LPAAFIV AAVGI LERLV+RWLYGRPLETLLCTWGISLMLMQ VRSIFGAQNVEVANPS Sbjct: 313 LPAAFIVTAAVGIVLERLVLRWLYGRPLETLLCTWGISLMLMQLVRSIFGAQNVEVANPS 372 Query: 371 WMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV 430 WMSGGVTVLGSLVLSYNRIVI+FFALFVV AVWLILNKTRLGLFVRAV QNRRMA CVGV Sbjct: 373 WMSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMASCVGV 432 Query: 431 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 490 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA Sbjct: 433 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 492 Query: 491 AFGLGEVNKFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 AFGLGEVNKFLEP+AGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE Sbjct: 493 AFGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 540 >ref|ZP_06689559.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease [Achromobacter piechaudii ATCC 43553] gb|EFF73450.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease [Achromobacter piechaudii ATCC 43553] Length = 543 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 336/519 (64%), Positives = 398/519 (76%), Gaps = 1/519 (0%) Query: 20 ALGAFAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDALYVTPAGDVL 79 A A A +DPALL PL GDD DA++ A+ + L A +L AL +D LY T G VL Sbjct: 26 AQAAAAGVDPALLAPLAGDDTDAKLQAIAALGQLPEPAAAAVLQALGNDQLYATADGRVL 85 Query: 80 IVDDAGKAFNPATDQTGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQRDQRLAAAGEL 139 I D A +P T P + +T+NNRLR A++ AL+G +L S + +RL AA L Sbjct: 86 IGVDDTHATDPVTGAAVDLPAGSGTVTINNRLRRAIEAALAGSRLFSDKPGERLDAARRL 145 Query: 140 LKNADPAQIPLIEKALAKESDPQIKDVLQQVQATANLHSTDPAARRAAVKKLAETTNASL 199 + DPA++P++EKALA E + ++D L+ QA L S+DPA RR AV+ L +T NA+ Sbjct: 146 QQTGDPARLPMLEKALASEKNEAVRDALRIAQANLELKSSDPAKRRHAVELLGDTRNAAF 205 Query: 200 KPVLENMLAKNPDGSYVEADEGVRIEAVRTLSALDRHLAIVDFAGKLFYGVSLGSVLLLA 259 +P L L + DG+Y+E D VR A L +DRHLA +++AG LFYGVSLGSVLLLA Sbjct: 206 RPTLA-ALTQQRDGAYLEPDASVREAAATALKQIDRHLATIEWAGNLFYGVSLGSVLLLA 264 Query: 260 ALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVALPAAFIVAA 319 ALGLAITFGLMG+INMAHGELLMIGAY TYV Q +FR + P +D Y+V ALP AF+V A Sbjct: 265 ALGLAITFGLMGVINMAHGELLMIGAYVTYVVQTLFRAWLPAWLDWYVVAALPLAFVVTA 324 Query: 320 AVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPSWMSGGVTVL 379 VG+ALER VIRWLYGRPLETLL TWGISLMLMQGVR++FGAQNVEV NPSWMSGG+TVL Sbjct: 325 LVGMALERTVIRWLYGRPLETLLATWGISLMLMQGVRTLFGAQNVEVGNPSWMSGGITVL 384 Query: 380 GSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMT 439 G LVL+YNR+VI+ FA FVVF VW++LN TRLGLFVRA+TQNRRMADCVGV TG+IDM+ Sbjct: 385 GGLVLTYNRLVIIGFAFFVVFLVWVLLNHTRLGLFVRAITQNRRMADCVGVPTGRIDMLA 444 Query: 440 FGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNK 499 FGLG GIAGL GVALSQLGNVGPDLG+GYIVDSFMVVVLGGVGQLAGTVIAA GLG VNK Sbjct: 445 FGLGSGIAGLAGVALSQLGNVGPDLGRGYIVDSFMVVVLGGVGQLAGTVIAALGLGGVNK 504 Query: 500 FLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 FLEP AGAV+AKI ILV I++F+QKRPQGLFA +GRSVE Sbjct: 505 FLEPYAGAVMAKITILVLIVLFVQKRPQGLFAPRGRSVE 543 >gb|EGP47551.1| urea ABC transporter permease protein UrtB 2 [Achromobacter xylosoxidans AXX-A] Length = 543 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 340/513 (66%), Positives = 393/513 (76%), Gaps = 1/513 (0%) Query: 26 AIDPALLKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDALYVTPAGDVLIVDDAG 85 +DPALL PL GDD DAR+ A+ + A +L AL +D LY P G VLI D G Sbjct: 32 GVDPALLAPLAGDDTDARLQAIAALGQQPGPGAAAVLQALGNDQLYALPDGRVLIGDGKG 91 Query: 86 KAFNPATDQTGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQRDQRLAAAGELLKNADP 145 +A +PAT T P P +A GI +NNRLR A++ AL+G +L S +RLAAA L + DP Sbjct: 92 QATDPATGTTLPMPAEASGIGINNRLRRAIEAALAGSRLFSDNPQERLAAARRLQQTGDP 151 Query: 146 AQIPLIEKALAKESDPQIKDVLQQVQATANLHSTDPAARRAAVKKLAETTNASLKPVLEN 205 A++PL+EKALA E D ++ L+ QA L S DPA R AV L T NA+ +P L Sbjct: 152 ARLPLLEKALAAEKDAAVRAALEIAQANLELKSADPAVRHHAVDLLGRTDNAAFRPTLA- 210 Query: 206 MLAKNPDGSYVEADEGVRIEAVRTLSALDRHLAIVDFAGKLFYGVSLGSVLLLAALGLAI 265 L + DG Y E D GVR A L +DRHLA +++AG LFYG+SLGSVLLLAALGLAI Sbjct: 211 ALTQQQDGVYAEPDAGVREAAANALKRIDRHLATIEWAGNLFYGLSLGSVLLLAALGLAI 270 Query: 266 TFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVALPAAFIVAAAVGIAL 325 TFGLMG+INMAHGELLMIGAY TY+ Q FR + PG +D Y+ ALP AF+V A VG+AL Sbjct: 271 TFGLMGVINMAHGELLMIGAYVTYLVQTAFRAWLPGWLDWYVAAALPLAFVVTALVGMAL 330 Query: 326 ERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPSWMSGGVTVLGSLVLS 385 ER VIRWLYGRPLETLL TWGISLMLMQGVR++FGAQNVEV NPSWMSGGVTVLG LVL+ Sbjct: 331 ERTVIRWLYGRPLETLLATWGISLMLMQGVRTLFGAQNVEVGNPSWMSGGVTVLGGLVLT 390 Query: 386 YNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCG 445 YNR+VI+ FALFVVF VW +LN TRLGLFVRA+TQNRRMADCVGV TG++DM+ FGLG G Sbjct: 391 YNRLVIIGFALFVVFLVWALLNHTRLGLFVRAITQNRRMADCVGVPTGRVDMLAFGLGSG 450 Query: 446 IAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPMA 505 IAGL GVALSQLGNVGPDLG+GYIVDSFMVVVLGGVGQLAGTVIAA GLG VNKFLEP A Sbjct: 451 IAGLAGVALSQLGNVGPDLGRGYIVDSFMVVVLGGVGQLAGTVIAALGLGGVNKFLEPYA 510 Query: 506 GAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 GAV+AKI ILV I++F+QKRPQGLFA +GRSVE Sbjct: 511 GAVMAKITILVLIVLFVQKRPQGLFAPRGRSVE 543