BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1796.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778087.1| urea ABC transporter periplasmic protein [He... 811 0.0 ref|YP_001353496.1| branched-chain amino acid transport system s... 778 0.0 ref|YP_004753495.1| urea ABC transporter urea binding protein [C... 777 0.0 ref|YP_001628898.1| putative substrate-binding periplasmic trans... 722 0.0 ref|YP_003981249.1| branched-chain amino acid transporter substr... 719 0.0 >ref|YP_003778087.1| urea ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ66179.1| ABC-type urea transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 412/417 (98%), Positives = 415/417 (99%) Query: 1 MSRRTVLKATALGAFALAASSWLPAAFAADTIKVGILHSLSGTMAISETSLKDVALMTID 60 MSRRTVLKATALGAFALAASSWLP+AFAADTIKVGILHSLSGTMAISETSLKDVALMTID Sbjct: 1 MSRRTVLKATALGAFALAASSWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMTID 60 Query: 61 EINANGGVNGKKLEPVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 120 EINA GGV GKKLEPV+VDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK Sbjct: 61 EINAAGGVMGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 120 Query: 121 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYP 180 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYP Sbjct: 121 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYP 180 Query: 181 RTTNKILRSFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 240 RTTNKILR+FLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN Sbjct: 181 RTTNKILRAFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 240 Query: 241 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIK 300 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIK Sbjct: 241 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIK 300 Query: 301 KWKEYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAP 360 KWKEYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAP Sbjct: 301 KWKEYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAP 360 Query: 361 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQKN 417 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQKN Sbjct: 361 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQKN 417 >ref|YP_001353496.1| branched-chain amino acid transport system substrate-binding protein [Janthinobacterium sp. Marseille] gb|ABR88998.1| branched-chain amino acid transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 417 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 393/416 (94%), Positives = 401/416 (96%) Query: 1 MSRRTVLKATALGAFALAASSWLPAAFAADTIKVGILHSLSGTMAISETSLKDVALMTID 60 MSRR +LKATALGAF LA SSWLP+AFAADTIKVGILHSLSGTMAISETSLKDVALMTID Sbjct: 1 MSRRNILKATALGAFTLATSSWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMTID 60 Query: 61 EINANGGVNGKKLEPVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 120 EINANGGV GKKLE VIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK Sbjct: 61 EINANGGVMGKKLEAVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 120 Query: 121 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYP 180 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPA EYLMSKEGGGAKRFVLLGTDYVYP Sbjct: 121 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPATEYLMSKEGGGAKRFVLLGTDYVYP 180 Query: 181 RTTNKILRSFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 240 RTTNKILR+FLHSKGV+DSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN Sbjct: 181 RTTNKILRAFLHSKGVRDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 240 Query: 241 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIK 300 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVN FIK Sbjct: 241 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNAGFIK 300 Query: 301 KWKEYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAP 360 KWK+YA AK LPNA TVVTNDPMEATYVG++MW QAVEKAKSTDTDKVIAAM GQT+KAP Sbjct: 301 KWKDYAVAKKLPNAKTVVTNDPMEATYVGLYMWKQAVEKAKSTDTDKVIAAMAGQTFKAP 360 Query: 361 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQK 416 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVV KTKTTIRAQPWSPYIPGNE KQK Sbjct: 361 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVNKTKTTIRAQPWSPYIPGNEGKQK 416 >ref|YP_004753495.1| urea ABC transporter urea binding protein [Collimonas fungivorans Ter331] gb|AEK62672.1| Urea ABC transporter, urea binding protein [Collimonas fungivorans Ter331] Length = 439 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 394/416 (94%), Positives = 401/416 (96%) Query: 1 MSRRTVLKATALGAFALAASSWLPAAFAADTIKVGILHSLSGTMAISETSLKDVALMTID 60 MSRRTVLKATALGAFALAAS+WLP+AFAADTIKVGILHSLSGTMAISETSLKDVALM I+ Sbjct: 23 MSRRTVLKATALGAFALAASAWLPSAFAADTIKVGILHSLSGTMAISETSLKDVALMAIE 82 Query: 61 EINANGGVNGKKLEPVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 120 EINANGGV GKKLEPV+VDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK Sbjct: 83 EINANGGVMGKKLEPVVVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVFK 142 Query: 121 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVYP 180 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPA EYLMSKEGGGAKRFVLLGTDYVYP Sbjct: 143 ELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPATEYLMSKEGGGAKRFVLLGTDYVYP 202 Query: 181 RTTNKILRSFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 240 RTTNKILRSFLHSKGVKD+DIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN Sbjct: 203 RTTNKILRSFLHSKGVKDADIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDSN 262 Query: 241 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFIK 300 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVD KPLVGHLAAWNYFESVKNPVNTAFIK Sbjct: 263 VPFYKELGNAGLKATDVPVVAFSVGEEELRGVDAKPLVGHLAAWNYFESVKNPVNTAFIK 322 Query: 301 KWKEYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKAP 360 KWK YA AK LPNA TVVTNDPMEATYVGI+MW QAVEKAKSTDTDKVIAAM GQ +KAP Sbjct: 323 KWKAYAVAKKLPNASTVVTNDPMEATYVGIYMWKQAVEKAKSTDTDKVIAAMSGQKFKAP 382 Query: 361 SGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQK 416 SGY LEMD TNHHLHKPVMIGEIKADGQFNVV KTKTTIRAQPWSPYIPGNE KQK Sbjct: 383 SGYELEMDATNHHLHKPVMIGEIKADGQFNVVNKTKTTIRAQPWSPYIPGNEGKQK 438 >ref|YP_001628898.1| putative substrate-binding periplasmic transport protein [Bordetella petrii DSM 12804] emb|CAP40627.1| putative substrate-binding periplasmic transport protein [Bordetella petrii] Length = 416 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 358/416 (86%), Positives = 381/416 (91%), Gaps = 3/416 (0%) Query: 1 MSRRTVLKA-TALGAFALAASSWLPAAFAADTIKVGILHSLSGTMAISETSLKDVALMTI 59 M RR VLK TA ALA W P AADTIKVGILHSLSGTMAISETSLKDVALMTI Sbjct: 1 MKRRLVLKQLTAASLMALAG--WAPGVMAADTIKVGILHSLSGTMAISETSLKDVALMTI 58 Query: 60 DEINANGGVNGKKLEPVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVF 119 +EINA GGV GKKLEPV+VDPASNWPLFAEKARQLI+QDKV+VVFGCWTSVSRKSVLPVF Sbjct: 59 EEINAQGGVMGKKLEPVVVDPASNWPLFAEKARQLITQDKVAVVFGCWTSVSRKSVLPVF 118 Query: 120 KELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVY 179 KELN LLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMS++GGGA+RFVLLGTDYVY Sbjct: 119 KELNGLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSEDGGGARRFVLLGTDYVY 178 Query: 180 PRTTNKILRSFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDS 239 PRTTNKILR+FLHSKGVKD DI EVYTPFGHSDYQTIVANIK+F+AGG+TAV+STINGDS Sbjct: 179 PRTTNKILRAFLHSKGVKDDDIQEVYTPFGHSDYQTIVANIKRFAAGGRTAVVSTINGDS 238 Query: 240 NVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFI 299 NVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYF+S+KNPVNTAFI Sbjct: 239 NVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFQSIKNPVNTAFI 298 Query: 300 KKWKEYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKA 359 +KWK YAKA NLPNA T VTNDPMEATY+GIHMW QAVEKA +TD D VI A+GGQT +A Sbjct: 299 EKWKAYAKAHNLPNAATAVTNDPMEATYIGIHMWKQAVEKAGTTDVDAVIGAVGGQTLQA 358 Query: 360 PSGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQ 415 P G+T+EMDKTNHHLHKPV IGEIKADGQFNVV+K+K IRAQPWSPYIPGNE KQ Sbjct: 359 PDGFTVEMDKTNHHLHKPVYIGEIKADGQFNVVWKSKGPIRAQPWSPYIPGNEGKQ 414 >ref|YP_003981249.1| branched-chain amino acid transporter substrate-binding protein [Achromobacter xylosoxidans A8] gb|ADP18534.1| branched-chain amino acid transport system substrate-binding protein [Achromobacter xylosoxidans A8] Length = 417 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 359/416 (86%), Positives = 381/416 (91%), Gaps = 2/416 (0%) Query: 1 MSRRTVLKATALGAFALAASSWLPAAFAA-DTIKVGILHSLSGTMAISETSLKDVALMTI 59 M RR LK + LA S W+P AA DTIKVGILHSLSGTMAISETSLKDVALM I Sbjct: 1 MKRRLALKQLTAVSL-LAMSGWMPQVHAAEDTIKVGILHSLSGTMAISETSLKDVALMAI 59 Query: 60 DEINANGGVNGKKLEPVIVDPASNWPLFAEKARQLISQDKVSVVFGCWTSVSRKSVLPVF 119 +EINANGGV GKKLE V+VDPASNWPLFAEK+RQL+SQDKV+VVFGCWTSVSRKSVLPVF Sbjct: 60 EEINANGGVMGKKLEAVVVDPASNWPLFAEKSRQLLSQDKVAVVFGCWTSVSRKSVLPVF 119 Query: 120 KELNSLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSKEGGGAKRFVLLGTDYVY 179 KELN LLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMS++GGGAKRFVLLGTDYVY Sbjct: 120 KELNGLLFYPVQYEGEELEKNVFYTGAAPNQQAIPAVEYLMSEDGGGAKRFVLLGTDYVY 179 Query: 180 PRTTNKILRSFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFSAGGKTAVISTINGDS 239 PRTTNKILR+FLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKF+ GGKTAVISTINGDS Sbjct: 180 PRTTNKILRAFLHSKGVKDSDIDEVYTPFGHSDYQTIVANIKKFATGGKTAVISTINGDS 239 Query: 240 NVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDTKPLVGHLAAWNYFESVKNPVNTAFI 299 NVPFYKELGNAGLKATDVPVVAFSVGEEELRGVD KPLVGHLAAWNYF+SVKNPVN AFI Sbjct: 240 NVPFYKELGNAGLKATDVPVVAFSVGEEELRGVDAKPLVGHLAAWNYFQSVKNPVNDAFI 299 Query: 300 KKWKEYAKAKNLPNADTVVTNDPMEATYVGIHMWAQAVEKAKSTDTDKVIAAMGGQTYKA 359 +KWK YAK KNLPNA+TVVTNDPMEATY+GIHMW QAVE+AK+TD DKVIAAMGGQ + A Sbjct: 300 QKWKAYAKTKNLPNANTVVTNDPMEATYIGIHMWKQAVEQAKTTDVDKVIAAMGGQKFNA 359 Query: 360 PSGYTLEMDKTNHHLHKPVMIGEIKADGQFNVVYKTKTTIRAQPWSPYIPGNESKQ 415 P GYT+EMD TNHHLHKPV IGEIKADGQF+VV+K+K IRAQPWSPYIPGNE KQ Sbjct: 360 PDGYTIEMDPTNHHLHKPVYIGEIKADGQFSVVWKSKGPIRAQPWSPYIPGNEGKQ 415