BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1793.p (464 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778084.1| extracellular solute-binding, family 1 prote... 552 e-155 ref|YP_001893445.1| extracellular solute-binding protein family ... 402 e-110 ref|YP_001863264.1| extracellular solute-binding protein [Burkho... 387 e-105 ref|ZP_07674035.1| bacterial extracellular solute-binding protei... 385 e-105 ref|YP_004645469.1| family 1 extracellular solute-binding protei... 107 4e-21 >ref|YP_003778084.1| extracellular solute-binding, family 1 protein [Herbaspirillum seropedicae SmR1] gb|ADJ66176.1| extracellular solute-binding, family 1 protein [Herbaspirillum seropedicae SmR1] Length = 473 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 296/419 (70%), Positives = 339/419 (80%), Gaps = 3/419 (0%) Query: 49 ACERG---DDSAATATAAAEPVVLTALVWAPDWSEEMHRVADAFSLKHPEVRINLQFMIG 105 CER + S A + +VL ALVWAPDW+EEM RV D F +HP VRINLQFMIG Sbjct: 55 GCERAGKEESSTVELAPAQDTLVLNALVWAPDWAEEMQRVCDGFMHEHPGVRINLQFMIG 114 Query: 106 NSVEENLKPRAATDSLPDIVSVNASPYTATLADQGLLADIGDTQAWGNMLEVLQREWTSP 165 NSVEENLKPRA TDSLPDIVSVNASPYTA+LADQGLLAD+G T++W +L++LQREWT+P Sbjct: 115 NSVEENLKPRATTDSLPDIVSVNASPYTASLADQGLLADLGQTRSWHGLLDILQREWTAP 174 Query: 166 GGRRYGIPSGVATTLIYYNRDMFDRAGITAPPADFESFLAAGAALRKAGLVPLALPGGFP 225 GG R+G+PSGVATTLIYY+ D+F+RAGI A P DFE FLAAGAALR+AG+ PLAL GGFP Sbjct: 175 GGCRFGLPSGVATTLIYYHPDLFERAGIQALPGDFEQFLAAGAALRRAGITPLALSGGFP 234 Query: 226 NMLGNGPFSYGFANQIAAKVPDWRARIANGTLQLDNADGAAIFARLRTLVDQKMVQADCL 285 NMLGNGPFSYGFAN +A+ PDWR IANGTL LDNA G A+F+RLRTL+ + +VQADCL Sbjct: 235 NMLGNGPFSYGFANLVASSTPDWRQHIANGTLALDNAQGWAVFSRLRTLMTRHLVQADCL 294 Query: 286 RAGYDTTLRQFAEGRAAMTFQGSWAAGTLMNARGMRVGVFVPPWNDKGQPLKPVLGSETG 345 RAGYD TLRQFAEGRAAMTFQGSWAAG LM RG VGVFVPPWNDK QP + V+GSETG Sbjct: 295 RAGYDATLRQFAEGRAAMTFQGSWAAGVLMQGRGQPVGVFVPPWNDKDQPRQAVIGSETG 354 Query: 346 FAVAQRSGARQRQAAVQFLDFLYGPGMPIWQAKRQNIPPFRVIAADVKGDPALFALVDQM 405 FA+AQR AR RQAA +FLD+L+G G+P+WQ KRQNI PF+ A KGD ALFAL M Sbjct: 355 FAIAQRISARHRQAAARFLDYLFGAGLPVWQGKRQNILPFKTPAPSAKGDAALFALAAGM 414 Query: 406 TRDAAASNAPGLYYSVLPVNTIDVLHPLLQSVLSGSQTPARAARLLQDSITEQARLSAR 464 RDAAA+ APGLYYS LPVNTIDVLH LL +VLSG TP +AAR LQ+SI+ QAR+ + Sbjct: 415 ARDAAATGAPGLYYSYLPVNTIDVLHALLPAVLSGKTTPVQAARALQESISAQARVGGK 473 >ref|YP_001893445.1| extracellular solute-binding protein family 1 [Ralstonia pickettii 12J] ref|YP_002983789.1| family 1 extracellular solute-binding protein [Ralstonia pickettii 12D] gb|ACD30018.1| extracellular solute-binding protein family 1 [Ralstonia pickettii 12J] gb|ACS65117.1| extracellular solute-binding protein family 1 [Ralstonia pickettii 12D] Length = 463 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 203/425 (47%), Positives = 286/425 (67%), Gaps = 7/425 (1%) Query: 37 FIAGLASALLLTACERGDDSAATATAAAEPVVLTALVWAPDWSEEMHRVADAFSLKHPEV 96 ++GL L+L+ C + D+ T++ +TAL+WAPDW E+M ++A FS +P+V Sbjct: 43 LLSGLIGLLVLSGCHQ-QDAPITSSPPPHRTSITALIWAPDWPEQMLQIAAEFSKLNPDV 101 Query: 97 RINLQFMIGNSVEENLKPRAATDSLPDIVSVNASPYTATLADQGLLADIGDTQAWGNMLE 156 ++++QFMIGNSVEEN+KPR A +LPD++SVN + Y+A LADQ +LAD+ T AW NML Sbjct: 102 QVDVQFMIGNSVEENIKPRVAAGTLPDLLSVNPNAYSAELADQRVLADVSQTSAWTNMLA 161 Query: 157 VLQREWTSPGGRRYGIPSGVATTLIYYNRDMFDRAGITAPPADFESFLAAGAALRKAGLV 216 L+R+WTS G+ +GI GVATT+IYYNR+MF++AGI PA+F+ FL A L++AG Sbjct: 162 PLKRDWTSRRGKGFGISGGVATTMIYYNREMFEKAGIDKLPANFDEFLRVCAQLKRAGFT 221 Query: 217 PLALPGGFPNMLGNGPFSYGFANQIAAKVPDWRARIANGTLQLDNADGAAIFARLRTLVD 276 PL L G FPNMLGNGPF+ GFAN + A P+W++++A GTL LD + A IFAR+ L + Sbjct: 222 PLMLNGAFPNMLGNGPFASGFANNVIAHEPNWKSKMAEGTLDLDTPEVADIFARMALLPE 281 Query: 277 QKMVQADCLRAGYDTTLRQFAEGRAAMTFQGSWAAGTLMNARGMRVGVFVPPWNDKGQPL 336 + VQA + GYD +R F EG+ AM FQGSWAAG L++ VGVF+PPWN +G+ + Sbjct: 282 RGYVQASFMATGYDDGMRLFKEGKVAMAFQGSWAAGLLLHGNRFAVGVFIPPWNKRGEQV 341 Query: 337 KPVLGSETGFAVAQRSGARQRQAAVQFLDFLYGPGMPIWQAKRQNIPPFRVIAADVKGDP 396 PVLGSETGFAV + + AA++FL+F+ G G PI Q KR NI PF+ A DP Sbjct: 342 VPVLGSETGFAVCETP---NKAAAMRFLEFIAGKGFPILQRKRHNISPFQQHAETAVSDP 398 Query: 397 ALFALVDQMTRDAAASNAPGLYYSVLPVNTIDVLHPLLQSVLSGSQTPARAARLLQDSIT 456 + + ++R ++ YYS LP NT++ LH L+Q VL +P +AA+ L +S+ Sbjct: 399 EIADYTNTVSRYLITASP---YYSTLPSNTLESLHGLMQDVLLKKMSPRQAAKRLDESVK 455 Query: 457 EQARL 461 +A++ Sbjct: 456 NEAKM 460 >ref|YP_001863264.1| extracellular solute-binding protein [Burkholderia phymatum STM815] gb|ACC76218.1| extracellular solute-binding protein family 1 [Burkholderia phymatum STM815] Length = 412 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 200/408 (49%), Positives = 275/408 (67%), Gaps = 7/408 (1%) Query: 55 DSAATATAAAEPVVLTALVWAPDWSEEMHRVADAFSLKHPEVRINLQFMIGNSVEENLKP 114 DSA+ AA ++TALVWAPDW EEM ++A AFS ++P++ +N+QFM+GNSVE N+KP Sbjct: 8 DSASPGAAAPAKTIITALVWAPDWPEEMLQIAAAFSKENPDIGVNVQFMVGNSVEANIKP 67 Query: 115 RAATDSLPDIVSVNASPYTATLADQGLLADIGDTQAWGNMLEVLQREWTSP-GGRRYGIP 173 R A+ +LPD+VSVN + Y+A LADQG+LA++G T AW NML+ L+ +WTS + +GI Sbjct: 68 RIASGNLPDLVSVNPNAYSADLADQGILAEVGKTAAWNNMLDPLKGDWTSRRQSKAFGIS 127 Query: 174 SGVATTLIYYNRDMFDRAGITAPPADFESFLAAGAALRKAGLVPLALPGGFPNMLGNGPF 233 GVAT L+YYN+DMF++AGI A P +F FLA L++AG P+ GGFPNMLGNGPF Sbjct: 128 GGVATVLMYYNQDMFEKAGIKALPTNFREFLAICEQLKRAGFTPVMWNGGFPNMLGNGPF 187 Query: 234 SYGFANQIAAKVPDWRARIANGTLQLDNADGAAIFARLRTLVDQKMVQADCLRAGYDTTL 293 S+GFAN + A+ P W+ +I +GTL L+ A IFA++ +V++ VQ + YD + Sbjct: 188 SFGFANNVVAREPAWKKKIDDGTLNLNTPAVADIFAKMSLIVERGYVQDGYMATDYDGGI 247 Query: 294 RQFAEGRAAMTFQGSWAAGTLMNARGMRVGVFVPPWNDKGQPLKPVLGSETGFAVAQRSG 353 R F EG+ AM F GSWAAG L++ GVF+PPWN G+ + PV+GSETGFAV Sbjct: 248 RLFKEGKVAMAFHGSWAAGLLLHGNPFHAGVFIPPWNAPGKRVVPVIGSETGFAVCDTP- 306 Query: 354 ARQRQAAVQFLDFLYGPGMPIWQAKRQNIPPFRVIAADVKGDPALFALVDQMTRDAAASN 413 + AA++FL+F+ G G I QAKRQNI PFR A + GDP + ++R ++ Sbjct: 307 --NKAAAMRFLEFIAGKGFGILQAKRQNISPFRQSAGAIAGDPRIVEYTRVVSRYPVTAS 364 Query: 414 APGLYYSVLPVNTIDVLHPLLQSVLSGSQTPARAARLLQDSITEQARL 461 YYSVLP N+I+ LH L+Q VL TP +AA+LL S+ +A++ Sbjct: 365 P---YYSVLPSNSIESLHRLMQDVLLNRITPKQAAQLLDASVKNEAKM 409 >ref|ZP_07674035.1| bacterial extracellular solute-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP67466.1| bacterial extracellular solute-binding protein [Ralstonia sp. 5_7_47FAA] Length = 411 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 195/417 (46%), Positives = 279/417 (66%), Gaps = 11/417 (2%) Query: 47 LTACERGDDSAATATAAAEP--VVLTALVWAPDWSEEMHRVADAFSLKHPEVRINLQFMI 104 ++ C++ D A T+A P +TAL+WAPDW E+M ++A FS +P+V++++QFMI Sbjct: 1 MSGCQQQD---APITSAPPPHRTSITALIWAPDWPEQMLQIAAEFSKLNPDVQVDVQFMI 57 Query: 105 GNSVEENLKPRAATDSLPDIVSVNASPYTATLADQGLLADIGDTQAWGNMLEVLQREWTS 164 GNSVEEN+KPR A ++PD++SVN + Y+A LA+Q +LA++ T AW NML L+R+WTS Sbjct: 58 GNSVEENIKPRVAAGTMPDLLSVNPNAYSAELAEQRILANVSQTSAWTNMLGPLKRDWTS 117 Query: 165 PGGRRYGIPSGVATTLIYYNRDMFDRAGITAPPADFESFLAAGAALRKAGLVPLALPGGF 224 G +GI GVATT+IYYNR+MF++AG+ PA+F+ FL A L++AG P+ L G F Sbjct: 118 RRGTGFGISGGVATTMIYYNREMFEKAGVDKLPANFDEFLRVCAQLKRAGFTPMMLNGAF 177 Query: 225 PNMLGNGPFSYGFANQIAAKVPDWRARIANGTLQLDNADGAAIFARLRTLVDQKMVQADC 284 PNMLGNGPF+ GFAN + A P+W++++A GTL LD + A IFA++ L ++ VQA Sbjct: 178 PNMLGNGPFASGFANNVIAHEPNWKSKMAEGTLDLDTPEVADIFAKMALLPERGYVQASF 237 Query: 285 LRAGYDTTLRQFAEGRAAMTFQGSWAAGTLMNARGMRVGVFVPPWNDKGQPLKPVLGSET 344 + GYD +R F EG+ AM FQGSWAAG L++ VG F+PPWN +G+ + PVLGSET Sbjct: 238 MATGYDDGMRLFKEGKVAMAFQGSWAAGQLLHGNRFAVGAFIPPWNKRGEQVVPVLGSET 297 Query: 345 GFAVAQRSGARQRQAAVQFLDFLYGPGMPIWQAKRQNIPPFRVIAADVKGDPALFALVDQ 404 GFAV + + AA +FL+F+ G G PI Q KR NI PF+ A DP + + Sbjct: 298 GFAVCETP---NKAAARRFLEFIAGKGFPILQRKRHNISPFQQDAETAVTDPEIVDYTNT 354 Query: 405 MTRDAAASNAPGLYYSVLPVNTIDVLHPLLQSVLSGSQTPARAARLLQDSITEQARL 461 ++R ++ YYS LP NT++ LH L+Q VL +P +AA+ L +S+ +A++ Sbjct: 355 VSRYLVTASP---YYSTLPSNTLESLHGLMQDVLLKKMSPRQAAKRLDESVKNEAKM 408 >ref|YP_004645469.1| family 1 extracellular solute-binding protein [Paenibacillus mucilaginosus KNP414] gb|AEI45599.1| extracellular solute-binding protein family 1 [Paenibacillus mucilaginosus KNP414] Length = 444 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 163/366 (44%), Gaps = 47/366 (12%) Query: 31 KRGLRIFIAGLASALLLTACERGDDSAATATAAA---------EPVVLTALVWAPDWSEE 81 ++ L+ +AG A+ LTAC G +S + AA + + +T PD ++ Sbjct: 4 RKTLKAVLAG-TMAISLTACGTGGESTGSTGAAGGDAGKDAKKDKITITFQNIWPDATDP 62 Query: 82 ----MHRVADAFSLKHPEVRINLQFMIGNSVEENLKPRAATDSLPDIVSVNASPYTATLA 137 M +V + K+P ++I L + + + LK +AA+ +PDI VN + Sbjct: 63 KNKLMKKVVADYEAKNPNIKIELDSLNTDQQKMKLKTQAASKEVPDITVVNPAEQMKPFV 122 Query: 138 DQGLLADIGDTQAWGNMLEVLQR---EWTSPGGRRYGIPSGVATTLIYYNRDMFDRAGIT 194 + GLLA + D + Q+ ++ S G Y +P G ++YYN+++F++ G+ Sbjct: 123 EAGLLAPLNDMLDQNGLKGTFQQGILDYYSFNGNTYAVPDGNNIGVVYYNKELFEKGGVK 182 Query: 195 APPADFESFLAAGAALRKAGLVPLAL------PGGFPNM-----LGNGPFSYGFANQIAA 243 P FE + L+ G+ P+ + G F M NGP GF +AA Sbjct: 183 V-PTTFEEMVETVKTLKSKGIQPMVIGEKDTWTGSFLFMNILLRTNNGP---GFLKDVAA 238 Query: 244 KVPDWRARIANGTLQLDNADGAAIFARLRTLVDQKMVQADCLRAGYDTTLRQFAEGRAAM 303 K + D A A+ ++++ L+ Q Y+ F G+AAM Sbjct: 239 KKKTFE----------DPAFTEAV-SKMQDLIQAGAFQEGVTSFDYNAGENLFKTGKAAM 287 Query: 304 TFQGSWAAGTL-MNARGMRVGVF-VPPWNDKGQPLKPVLGSETGFAVAQRSGARQRQAAV 361 + GSWA G + ++ +VGVF P KG P + +L +GFAV+ S + + Sbjct: 288 YYMGSWATGGIETSSVNGKVGVFKFPTVGGKGNPDEYMLAPGSGFAVSANS--KHLKETK 345 Query: 362 QFLDFL 367 FL++L Sbjct: 346 DFLNYL 351