BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1791.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778082.1| permease [Herbaspirillum seropedicae SmR1] >... 460 e-127 ref|YP_001355222.1| transporter of the DMT superfamily chloramph... 296 3e-78 ref|YP_001101534.1| chloramphenicol resistance protein [Herminii... 294 1e-77 ref|ZP_08276244.1| Protein rarD [Oxalobacteraceae bacterium IMCC... 283 2e-74 ref|YP_004754875.1| RarD protein, DMT superfamily transporter [C... 283 3e-74 >ref|YP_003778082.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ66174.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 283/298 (94%), Positives = 290/298 (97%) Query: 1 MLHAVCASILWGLFPLYFKLLKEIPSFDIVVHRLFWSCVFLVAVLAWRRQWRWVGEVIKR 60 ML+AV ASILWGLFPLYFKLLKEIPSFDIVVHRLFWSCVFLVAVL WRRQWRWVGEV+KR Sbjct: 1 MLYAVAASILWGLFPLYFKLLKEIPSFDIVVHRLFWSCVFLVAVLTWRRQWRWVGEVVKR 60 Query: 61 PRVVLGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQ 120 P VV GFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQ Sbjct: 61 PMVVGGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQ 120 Query: 121 WLAVFLALGAVIWLTFANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPL 180 WLAVFLALGAVIWLT ANGSLPW+SLLIAL+FAFYGLLRKTAHLGALEGLSLETLLMLPL Sbjct: 121 WLAVFLALGAVIWLTIANGSLPWVSLLIALSFAFYGLLRKTAHLGALEGLSLETLLMLPL 180 Query: 181 VLAILGVDTLRDSNAFTHASTTAKILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYIS 240 VL +LGVDTLRDSNAFTHAST+A+ILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYIS Sbjct: 181 VLLVLGVDTLRDSNAFTHASTSARILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYIS 240 Query: 241 PTIQLLGGVLIYGEPFTGARAIGFCVIWVALAVYSAEGLWRYLRTRAQSSAEPSAGGA 298 PTIQLLGGVLIYGE FTGARAIGFCVIW ALAVYSAEGLWRYLRTRAQSSAEPSAGGA Sbjct: 241 PTIQLLGGVLIYGEAFTGARAIGFCVIWAALAVYSAEGLWRYLRTRAQSSAEPSAGGA 298 >ref|YP_001355222.1| transporter of the DMT superfamily chloramphenicol-sensitivity protein (rarD family) [Janthinobacterium sp. Marseille] gb|ABR89566.1| transporter of the DMT superfamily, Chloramphenicol-Sensitivity Protein (rarD family) [Janthinobacterium sp. Marseille] Length = 296 Score = 296 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 168/287 (58%), Positives = 216/287 (75%) Query: 1 MLHAVCASILWGLFPLYFKLLKEIPSFDIVVHRLFWSCVFLVAVLAWRRQWRWVGEVIKR 60 ML+A+CA + WG FP+YFK L +I +I++HR+ W+ FL+ VLA RRQW W+ V+++ Sbjct: 5 MLYALCAYVAWGSFPIYFKSLHDIAPLEILLHRMVWALGFLLIVLAVRRQWAWLSAVLRQ 64 Query: 61 PRVVLGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQ 120 P+V+ GF SALLL+ NW +Y+WAVN RI+D SLGYFM+PL++V +G+L+L ER+R LQ Sbjct: 65 PKVLAGFTASALLLSTNWFVYIWAVNHDRIIDASLGYFMTPLVNVLLGFLVLGERLRRLQ 124 Query: 121 WLAVFLALGAVIWLTFANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPL 180 W AVF+A V WLT+ NG LPWI L + LTF YGLLRKTA LGALEGLSLETLL+ PL Sbjct: 125 WAAVFVAALGVAWLTWENGHLPWIGLTLGLTFGTYGLLRKTAKLGALEGLSLETLLLFPL 184 Query: 181 VLAILGVDTLRDSNAFTHASTTAKILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYIS 240 + L V SN+F HA T ++ LL +GPITA+PLLLFA ARRIPLS LGL+QYI+ Sbjct: 185 AVLALAVMAWNGSNSFIHAPTASQWLLVAAGPITAIPLLLFATAARRIPLSTLGLLQYIT 244 Query: 241 PTIQLLGGVLIYGEPFTGARAIGFCVIWVALAVYSAEGLWRYLRTRA 287 PT+QLL GV +Y EPF+ AR +GF IW+AL +YSA+GLW+ R A Sbjct: 245 PTLQLLVGVWLYHEPFSSARLVGFAAIWIALGLYSADGLWQNYRQPA 291 >ref|YP_001101534.1| chloramphenicol resistance protein [Herminiimonas arsenicoxydans] emb|CAL63413.1| putative chloramphenicol resistance permease rarD-like [Herminiimonas arsenicoxydans] Length = 294 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 161/280 (57%), Positives = 216/280 (77%) Query: 1 MLHAVCASILWGLFPLYFKLLKEIPSFDIVVHRLFWSCVFLVAVLAWRRQWRWVGEVIKR 60 +L+A+CA ++WG+FP+YFK L+EIP +++++R+ W+ FL VL+ R+QW W+G V+K+ Sbjct: 5 ILYALCAYVIWGMFPIYFKSLQEIPPMEVLMYRMVWALAFLAIVLSVRKQWAWLGPVLKQ 64 Query: 61 PRVVLGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQ 120 P+V+ GF SALLL+ NW LY+WAVN R+VD SLGYFM+PL++V +G +ILKER+R LQ Sbjct: 65 PKVLAGFTASALLLSSNWFLYIWAVNQDRVVDASLGYFMTPLVNVLLGSVILKERLRILQ 124 Query: 121 WLAVFLALGAVIWLTFANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPL 180 W+AV +A V+WLT+ NG PWISL+I +TF YGLLRKTA LG LEGLSLET+L+ PL Sbjct: 125 WVAVGIAALGVLWLTWQNGHPPWISLMIGITFGMYGLLRKTASLGTLEGLSLETMLLFPL 184 Query: 181 VLAILGVDTLRDSNAFTHASTTAKILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYIS 240 + L T + ++ F ASTT K L+ SGPITA+PLL+FA AR +PLS +GLMQYI+ Sbjct: 185 AVISLLFMTSQGAHGFVDASTTTKWLMIASGPITAIPLLMFAAAARLVPLSTMGLMQYIT 244 Query: 241 PTIQLLGGVLIYGEPFTGARAIGFCVIWVALAVYSAEGLW 280 P++QLL G+ +Y EPF GAR IGF IW+ALA YS +GLW Sbjct: 245 PSLQLLAGIWLYHEPFGGARLIGFAAIWIALAFYSIDGLW 284 >ref|ZP_08276244.1| Protein rarD [Oxalobacteraceae bacterium IMCC9480] gb|EGF30284.1| Protein rarD [Oxalobacteraceae bacterium IMCC9480] Length = 299 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 169/291 (58%), Positives = 215/291 (73%) Query: 1 MLHAVCASILWGLFPLYFKLLKEIPSFDIVVHRLFWSCVFLVAVLAWRRQWRWVGEVIKR 60 ML A A ++WGL PLYFK L+ I I++HR+ WS +FL+ VLAWRRQW W+ + +++ Sbjct: 5 MLFAATAYVIWGLLPLYFKALQSIAPTQIMLHRMVWSLLFLLCVLAWRRQWSWLADAVRQ 64 Query: 61 PRVVLGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPLQ 120 P+V+ FLLSA+LL+ NW Y+WAVN GRI+D+SLGYF++PL++V +GY++L ER+R +Q Sbjct: 65 PKVLATFLLSAVLLSTNWFTYIWAVNNGRIIDSSLGYFINPLVNVLLGYVVLGERLRGVQ 124 Query: 121 WLAVFLALGAVIWLTFANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLPL 180 WLAV LA G V WLT+ G PWI L +AL+F FYGL+RKTA LG LEGLSLETLL+ P Sbjct: 125 WLAVALAAGGVAWLTWITGQPPWIGLTLALSFGFYGLMRKTAALGPLEGLSLETLLLFPF 184 Query: 181 VLAILGVDTLRDSNAFTHASTTAKILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYIS 240 LA L TL NAF A T ++ LL +GPITAVPLLLFA GARRIP++ LGL+QYI Sbjct: 185 ALAALAWLTLHQQNAFLDAPTQSQWLLMAAGPITAVPLLLFAAGARRIPMATLGLLQYIG 244 Query: 241 PTIQLLGGVLIYGEPFTGARAIGFCVIWVALAVYSAEGLWRYLRTRAQSSA 291 P++QL GVL+Y E F+G R IGF IW AL VYS E +WR R R+ S A Sbjct: 245 PSLQLALGVLLYNESFSGDRLIGFAAIWSALVVYSGESVWRAWRNRSASPA 295 >ref|YP_004754875.1| RarD protein, DMT superfamily transporter [Collimonas fungivorans Ter331] gb|AEK64052.1| RarD protein, DMT superfamily transporter [Collimonas fungivorans Ter331] Length = 296 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 174/291 (59%), Positives = 223/291 (76%), Gaps = 1/291 (0%) Query: 1 MLHAVCASILWGLFPLYFKLLK-EIPSFDIVVHRLFWSCVFLVAVLAWRRQWRWVGEVIK 59 M +A+ + ILWGLFP+YFK L+ EIP DIV+HR+ WS +FLV VL R+QW WVG V++ Sbjct: 5 MFYAIASYILWGLFPIYFKALEAEIPPVDIVMHRMLWSFLFLVIVLTVRKQWAWVGPVLR 64 Query: 60 RPRVVLGFLLSALLLTGNWTLYVWAVNAGRIVDTSLGYFMSPLMSVFMGYLILKERMRPL 119 +PRV+ GF+ SALLLT NWT Y+WAVN IV+ SLGYF++P++SV +G++ L+ER R L Sbjct: 65 QPRVIGGFIASALLLTANWTTYIWAVNNNHIVEASLGYFINPMVSVALGFIFLRERPRLL 124 Query: 120 QWLAVFLALGAVIWLTFANGSLPWISLLIALTFAFYGLLRKTAHLGALEGLSLETLLMLP 179 QWLA+ LA AV+WLT+ G PWI+L +A+TF YGLLRKTA LGAL GL+LET L+LP Sbjct: 125 QWLAIALAAAAVLWLTWQAGHPPWIALTLAVTFGSYGLLRKTASLGALPGLALETALVLP 184 Query: 180 LVLAILGVDTLRDSNAFTHASTTAKILLALSGPITAVPLLLFAHGARRIPLSMLGLMQYI 239 L LA L T++D N F AST+ K LL +GPIT++PLL+FA GARRIPLS++G++QYI Sbjct: 185 LALAYLAYTTVQDHNTFVSASTSTKWLLVAAGPITSIPLLMFAAGARRIPLSLVGVLQYI 244 Query: 240 SPTIQLLGGVLIYGEPFTGARAIGFCVIWVALAVYSAEGLWRYLRTRAQSS 290 +P++QLL GV +YGE GAR GF VIWVALA+YS EGLWR R +S Sbjct: 245 TPSLQLLLGVWLYGEELDGARLTGFVVIWVALALYSVEGLWRTFAARPGAS 295