BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1787.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778080.1| Na+-dependent transporter protein [Herbaspir... 454 e-126 ref|ZP_02887475.1| Bile acid:sodium symporter [Burkholderia gram... 404 e-110 ref|YP_003605746.1| Bile acid:sodium symporter [Burkholderia sp.... 404 e-110 ref|YP_001896563.1| sodium symporter [Burkholderia phytofirmans ... 397 e-108 ref|YP_559959.1| BASS family Na(+)/bile acid symporter [Burkhold... 397 e-108 >ref|YP_003778080.1| Na+-dependent transporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ66172.1| Na+-dependent transporter protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 302/304 (99%), Positives = 304/304 (100%) Query: 26 MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 85 MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR Sbjct: 1 MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 60 Query: 86 PAPVAAGIILHYLVMPLAAWVIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 145 PAPVAAGIILHYLVMPLAAW+IAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA Sbjct: 61 PAPVAAGIILHYLVMPLAAWIIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 120 Query: 146 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 205 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK Sbjct: 121 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 180 Query: 206 LIRRIEPYLSLVSMVAILLIISAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 265 LIRRIEPYLSLVSMVAILLII+AVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL Sbjct: 181 LIRRIEPYLSLVSMVAILLIIAAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 240 Query: 266 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 325 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR Sbjct: 241 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 300 Query: 326 PPRD 329 PPRD Sbjct: 301 PPRD 304 >ref|ZP_02887475.1| Bile acid:sodium symporter [Burkholderia graminis C4D1M] gb|EDT06949.1| Bile acid:sodium symporter [Burkholderia graminis C4D1M] Length = 319 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 236/303 (77%), Positives = 264/303 (87%) Query: 26 MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 85 MLA ITRLFP+WA+L+S AAY +P +F+ I ++T LLT+IML MGVTL+V DF+R+ R Sbjct: 1 MLARITRLFPLWAVLISVAAYSSPASFSGIAPHVTTLLTIIMLAMGVTLSVADFQRVFTR 60 Query: 86 PAPVAAGIILHYLVMPLAAWVIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 145 PAPV AGI+LHYLVMPLAAW IAK LRMPPDLTAGMVLVGSVASGTASNVMIYL+RGDVA Sbjct: 61 PAPVIAGIVLHYLVMPLAAWAIAKALRMPPDLTAGMVLVGSVASGTASNVMIYLARGDVA 120 Query: 146 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 205 LSVTIS LS LV VFATP+LT LYVDASI D H MLMSI+QIV +PI VGLV+N K Sbjct: 121 LSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSILQIVALPIVVGLVVNHLFNK 180 Query: 206 LIRRIEPYLSLVSMVAILLIISAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 265 +R++EP L LVSMVAILLII AVV G+Q SIASVGLVV+ GV+LHNG+GLLGGYWGGRL Sbjct: 181 TVRKVEPVLPLVSMVAILLIIGAVVGGTQKSIASVGLVVMFGVVLHNGIGLLGGYWGGRL 240 Query: 266 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 325 LGFDEAVCRTLAIEVGMQNSGLAA LGKLYFTP+AALPGALFSVWHNLSGSLLAG+W GR Sbjct: 241 LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGFWAGR 300 Query: 326 PPR 328 P + Sbjct: 301 PAK 303 >ref|YP_003605746.1| Bile acid:sodium symporter [Burkholderia sp. CCGE1002] gb|ADG16235.1| Bile acid:sodium symporter [Burkholderia sp. CCGE1002] Length = 319 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 235/303 (77%), Positives = 265/303 (87%) Query: 26 MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 85 MLA +TRLFP+WA+L+S AAYF+P +F+ + ++T LLT+IML MGVTL+ DF R+ R Sbjct: 1 MLARVTRLFPLWAVLVSVAAYFSPASFSGVAPHVTTLLTIIMLAMGVTLSAGDFLRVFTR 60 Query: 86 PAPVAAGIILHYLVMPLAAWVIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 145 PAPV AGI+LHYLVMPLAAWVIAK LRMPPDLTAGMVLVGSVASGTASNVMIYL+RGDVA Sbjct: 61 PAPVIAGIVLHYLVMPLAAWVIAKALRMPPDLTAGMVLVGSVASGTASNVMIYLARGDVA 120 Query: 146 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 205 LSVTIS LS LV VFATP+LT LYVDASI D H MLMSI+QIV +PI VGLV+N GK Sbjct: 121 LSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSILQIVALPIVVGLVVNHLFGK 180 Query: 206 LIRRIEPYLSLVSMVAILLIISAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 265 L+R+IEP L LVSMVAI+LII AVV G+Q SIASVG +V++GV+LHNG+GLLGGYWGGRL Sbjct: 181 LVRKIEPILPLVSMVAIVLIIGAVVGGTQKSIASVGFLVMIGVVLHNGIGLLGGYWGGRL 240 Query: 266 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 325 LGFDEAVCRTLAIEVGMQNSGLAA LGKLYFTP+AALPGALFSVWHNLSGSLLAG W GR Sbjct: 241 LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGVWAGR 300 Query: 326 PPR 328 P + Sbjct: 301 PAK 303 >ref|YP_001896563.1| sodium symporter [Burkholderia phytofirmans PsJN] gb|ACD17339.1| Bile acid:sodium symporter [Burkholderia phytofirmans PsJN] Length = 319 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 236/303 (77%), Positives = 268/303 (88%) Query: 26 MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 85 MLA +TRLFP+WA+L+S AAYF+P +F + ++T LLT+IML MGVTL+V DF+R+ R Sbjct: 1 MLARVTRLFPLWAVLVSIAAYFSPASFAGVAPHVTTLLTIIMLAMGVTLSVADFQRVFTR 60 Query: 86 PAPVAAGIILHYLVMPLAAWVIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 145 PAPV AGI+LHYLVMPLAAWVIAK LRMPPDLTAGMVLVGSVASGTASNVMIYL+RGDVA Sbjct: 61 PAPVIAGIVLHYLVMPLAAWVIAKALRMPPDLTAGMVLVGSVASGTASNVMIYLARGDVA 120 Query: 146 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 205 LSVTIS LS LV VFATP+LT LYVDASI D H MLMSI+QIV +PI VGL++N GK Sbjct: 121 LSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSILQIVALPIVVGLIVNHLFGK 180 Query: 206 LIRRIEPYLSLVSMVAILLIISAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 265 ++R+IEP L L+SMVAI+LII AVV G+Q SIASVGLVV++GV+LHNG+GLLGGYWGGRL Sbjct: 181 VVRKIEPILPLISMVAIVLIIGAVVGGTQKSIASVGLVVMLGVVLHNGIGLLGGYWGGRL 240 Query: 266 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 325 LGFDEAVCRTLAIEVGMQNSGLAA LGKLYFTP+AALPGALFSVWHNLSGSLLAGYW GR Sbjct: 241 LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGYWAGR 300 Query: 326 PPR 328 P + Sbjct: 301 PAK 303 >ref|YP_559959.1| BASS family Na(+)/bile acid symporter [Burkholderia xenovorans LB400] gb|ABE31907.1| Na+/bile acid symporter, BASS family [Burkholderia xenovorans LB400] Length = 319 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 235/303 (77%), Positives = 269/303 (88%) Query: 26 MLATITRLFPVWALLLSAAAYFTPPTFTPIGKYITQLLTLIMLTMGVTLTVDDFKRIIKR 85 MLA +TRLFP+WA+L+S AAYF+P +F+ I ++T LLT+IML MGVTL+V DF+R+ R Sbjct: 1 MLARVTRLFPLWAVLVSIAAYFSPASFSGIAPHVTTLLTIIMLAMGVTLSVADFQRVFTR 60 Query: 86 PAPVAAGIILHYLVMPLAAWVIAKVLRMPPDLTAGMVLVGSVASGTASNVMIYLSRGDVA 145 PAPV AGI+LHYLVMPLAAWVIA+ LRMPPDLTAGMVLVGSVASGTASNVMIYL+RGDVA Sbjct: 61 PAPVIAGIVLHYLVMPLAAWVIARALRMPPDLTAGMVLVGSVASGTASNVMIYLARGDVA 120 Query: 146 LSVTISTLSALVSVFATPMLTELYVDASIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGK 205 LSVTIS LS LV VFATP+LT LYVDASI D H MLMSI+QIV +PI VGL++N GK Sbjct: 121 LSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSILQIVALPIVVGLIVNHLFGK 180 Query: 206 LIRRIEPYLSLVSMVAILLIISAVVAGSQASIASVGLVVLVGVILHNGLGLLGGYWGGRL 265 ++R+IEP L L+SM+AI+LII AVV G+Q SIASVGLVV++GV+LHNG+GLLGGYWGGRL Sbjct: 181 VVRKIEPVLPLISMIAIVLIIGAVVGGTQKSIASVGLVVMLGVVLHNGIGLLGGYWGGRL 240 Query: 266 LGFDEAVCRTLAIEVGMQNSGLAAALGKLYFTPVAALPGALFSVWHNLSGSLLAGYWRGR 325 LGFDEAVCRTLAIEVGMQNSGLAA LGKLYFTP+AALPGALFSVWHNLSGSLLAGYW GR Sbjct: 241 LGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAALPGALFSVWHNLSGSLLAGYWAGR 300 Query: 326 PPR 328 P + Sbjct: 301 PAK 303