BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1785.p (560 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778078.1| acyl-CoA synthetase/AMP-acid ligase II prote... 1073 0.0 gb|ABK64012.1| putative AMP-dependent synthetase and ligase [Jan... 896 0.0 gb|ABK64089.1| putative AMP-dependent synthetase and ligase [Jan... 895 0.0 ref|YP_840669.1| acyl-CoA synthetase [Ralstonia eutropha H16] >g... 893 0.0 ref|YP_004681305.1| acyl-CoA synthetase [Cupriavidus necator N-1... 889 0.0 >ref|YP_003778078.1| acyl-CoA synthetase/AMP-acid ligase II protein [Herbaspirillum seropedicae SmR1] gb|ADJ66170.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II protein [Herbaspirillum seropedicae SmR1] Length = 546 Score = 1073 bits (2774), Expect = 0.0, Method: Composition-based stats. Identities = 527/546 (96%), Positives = 536/546 (98%) Query: 15 MADFDTGLGRNAANYAALTPIDFIARAAAVYGQRPAIIHGALRQDWDQTYRRTRRLASAL 74 MADFDTGLGRNAANYAALTPIDFIARAAAVYG+R AIIHGALRQDWDQTYRRTRRLASAL Sbjct: 1 MADFDTGLGRNAANYAALTPIDFIARAAAVYGKRTAIIHGALRQDWDQTYRRTRRLASAL 60 Query: 75 QRLGIGKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLRHGEAKVLL 134 Q LG+GKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLRHGEAKVLL Sbjct: 61 QGLGVGKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLRHGEAKVLL 120 Query: 135 IDSEFAALAQQLRTQLPALKIVEVFDVLGPPPVPGERFGHLEYEALLADGDENFEWQWPA 194 IDSEFAALAQQLRTQLPALKIVEVFD LGPPPV GERFGHLEYEALLA GDE+F+WQ PA Sbjct: 121 IDSEFAALAQQLRTQLPALKIVEVFDELGPPPVAGERFGHLEYEALLAGGDEHFDWQMPA 180 Query: 195 DEWDAIALNYTSGTTGDPKGVVYHHRGAALNAVSNILEWDLPKHPVYLWTLPMFHCNGWC 254 DEWDAIALNYTSGTTGDPKGVVYHHRGAALNAVSNILEWDLPKHPVYLWTLPMFHCNGWC Sbjct: 181 DEWDAIALNYTSGTTGDPKGVVYHHRGAALNAVSNILEWDLPKHPVYLWTLPMFHCNGWC 240 Query: 255 FPWTVAARAGVNVCLRKFDPKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAGIRGPV 314 FPWTVAARAGVNVCLRKF+PKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAGIRGPV Sbjct: 241 FPWTVAARAGVNVCLRKFEPKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAGIRGPV 300 Query: 315 KAMVAGAPPPAAVLAKMEAMQFELTHVYGLTEVYGPAAVCAEQDEWSTLSVDQRAVQKSR 374 KAMVAGAPPPAAVLAKMEAMQFELTHVYGLTEVYGPAAVCAEQDEW+TLSVDQRAVQKSR Sbjct: 301 KAMVAGAPPPAAVLAKMEAMQFELTHVYGLTEVYGPAAVCAEQDEWNTLSVDQRAVQKSR 360 Query: 375 QGVRYHLQSGVTVLSPDTMEPVAADGEEIGEIMFRGNICMKGYLKNDKATHEAFAGGWFH 434 QGVRYHLQSGVTVLSPDTM PVAADGEEIGEIMFRGNICMKGYLKND+ATHEAFAGGWFH Sbjct: 361 QGVRYHLQSGVTVLSPDTMAPVAADGEEIGEIMFRGNICMKGYLKNDRATHEAFAGGWFH 420 Query: 435 TGDLGVMNADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPDEKWGE 494 TGDLGVMNADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPDEKWGE Sbjct: 421 TGDLGVMNADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPDEKWGE 480 Query: 495 TPCAFVELKDGANIDAAELTEFCRGHLAGFKVPKAIYFGPLPKTSTGKIQKFELRKRMKS 554 TPCAFVELK+GA + AAELTEFCR HLAGFKVPKAIYFGPLPKTSTGKIQKFELRKRMKS Sbjct: 481 TPCAFVELKEGAEVGAAELTEFCRSHLAGFKVPKAIYFGPLPKTSTGKIQKFELRKRMKS 540 Query: 555 DSAINV 560 DSAINV Sbjct: 541 DSAINV 546 >gb|ABK64012.1| putative AMP-dependent synthetase and ligase [Janthinobacterium lividum] Length = 578 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 426/551 (77%), Positives = 482/551 (87%), Gaps = 4/551 (0%) Query: 11 KETSM-ADFDTGLGRNAANYAALTPIDFIARAAAVYGQRPAIIHGALRQDWDQTYRRTRR 69 +ETSM ADF+TGLG+N+ANYAALTP+D+IARAAAVYG R AI HGA+RQ W TY RTRR Sbjct: 31 QETSMTADFNTGLGKNSANYAALTPLDYIARAAAVYGNRLAIAHGAVRQTWGVTYARTRR 90 Query: 70 LASALQRLGIGKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLRHGE 129 LAS L +LG+ DTV+ MLPNTPAMVEA FGVPMAGAVLNALNIRLD S+ FMLRHG+ Sbjct: 91 LASGLIKLGVSTGDTVAVMLPNTPAMVEASFGVPMAGAVLNALNIRLDLASLTFMLRHGQ 150 Query: 130 AKVLLIDSEFAALAQQLRTQLPALKIVEVFDVLGPPPVPGERFGHLEYEALLADGDENFE 189 AKVLL D+EFA LA+Q+ Q+P L++++V DVLGP + F L+YE+LLA GD +++ Sbjct: 151 AKVLLADTEFAELARQMAAQIPGLRVIQVNDVLGPEV---DAFSDLDYESLLASGDPDYD 207 Query: 190 WQWPADEWDAIALNYTSGTTGDPKGVVYHHRGAALNAVSNILEWDLPKHPVYLWTLPMFH 249 WQ PADEWDAIALNYTSGTTGDPKGVVYHHRGAALNA+SNILEWD+PKH VYLWTLPMFH Sbjct: 208 WQPPADEWDAIALNYTSGTTGDPKGVVYHHRGAALNALSNILEWDMPKHAVYLWTLPMFH 267 Query: 250 CNGWCFPWTVAARAGVNVCLRKFDPKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAG 309 CNGWCFPWT+AARAGVNVCLRKF+PKLVFDL+ E ITHYCAAPIVHAALANAP WR G Sbjct: 268 CNGWCFPWTIAARAGVNVCLRKFEPKLVFDLMRELRITHYCAAPIVHAALANAPANWRDG 327 Query: 310 IRGPVKAMVAGAPPPAAVLAKMEAMQFELTHVYGLTEVYGPAAVCAEQDEWSTLSVDQRA 369 I V+ MVAGAPPPAA++AK+EAM F+L H YGLTEVYGPAA+CAEQDEW+ LS ++RA Sbjct: 328 IDWTVRGMVAGAPPPAAMVAKIEAMGFDLIHSYGLTEVYGPAAICAEQDEWAALSQEERA 387 Query: 370 VQKSRQGVRYHLQSGVTVLSPDTMEPVAADGEEIGEIMFRGNICMKGYLKNDKATHEAFA 429 V KSRQGVRYHLQS V V+ P+TM+PVAADGE+IGEIMFRGNICMKGYLKN++AT EAFA Sbjct: 388 VLKSRQGVRYHLQSAVAVIDPETMQPVAADGEQIGEIMFRGNICMKGYLKNERATQEAFA 447 Query: 430 GGWFHTGDLGVMNADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPD 489 GGWFHTGDLGVM DGYIK+KDRSKDIIISGGENISSVEVED LY HP VLAAAV+AQPD Sbjct: 448 GGWFHTGDLGVMYPDGYIKLKDRSKDIIISGGENISSVEVEDALYHHPQVLAAAVIAQPD 507 Query: 490 EKWGETPCAFVELKDGANIDAAELTEFCRGHLAGFKVPKAIYFGPLPKTSTGKIQKFELR 549 EKWGETPCAFVEL++G + AEL FC+ +LAGFKVPKAIYFGPLP+TSTGKIQKFELR Sbjct: 508 EKWGETPCAFVELREGGTVTEAELIAFCKNNLAGFKVPKAIYFGPLPRTSTGKIQKFELR 567 Query: 550 KRMKSDSAINV 560 KRM+SD AI+V Sbjct: 568 KRMQSDKAIDV 578 >gb|ABK64089.1| putative AMP-dependent synthetase and ligase [Janthinobacterium lividum] Length = 544 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 426/545 (78%), Positives = 478/545 (87%), Gaps = 3/545 (0%) Query: 16 ADFDTGLGRNAANYAALTPIDFIARAAAVYGQRPAIIHGALRQDWDQTYRRTRRLASALQ 75 ADF+TGLG+N+ANYAALTP+D+IARAAAVYG R AI HGA+RQ W +TY RTRRLAS+L Sbjct: 3 ADFNTGLGKNSANYAALTPLDYIARAAAVYGNRLAIAHGAVRQTWQETYARTRRLASSLI 62 Query: 76 RLGIGKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLRHGEAKVLLI 135 +LG+G DTV+ MLPNTPAMVEA FGVPMAGAVLNALNIRLD S+ FMLRHG+AKVLL Sbjct: 63 KLGVGTGDTVAVMLPNTPAMVEASFGVPMAGAVLNALNIRLDLASLTFMLRHGQAKVLLA 122 Query: 136 DSEFAALAQQLRTQLPALKIVEVFDVLGPPPVPGERFGHLEYEALLADGDENFEWQWPAD 195 D+EFA LA+Q+ Q+P L++++V DVLGP P F L+YE LLA GD ++WQ PAD Sbjct: 123 DTEFAELARQMAAQIPGLRVIQVNDVLGPEVEP---FAELDYETLLASGDPGYDWQPPAD 179 Query: 196 EWDAIALNYTSGTTGDPKGVVYHHRGAALNAVSNILEWDLPKHPVYLWTLPMFHCNGWCF 255 EWDAIALNYTSGTTGDPKGVVYHHRGAALNA+SNILEWD+PKH VYLWTLPMFHCNGWCF Sbjct: 180 EWDAIALNYTSGTTGDPKGVVYHHRGAALNALSNILEWDMPKHAVYLWTLPMFHCNGWCF 239 Query: 256 PWTVAARAGVNVCLRKFDPKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAGIRGPVK 315 PWTVAARAGVNVCLRKF+PKLVFDL+ E ITHYCAAPIVHAALANAP WR GI V+ Sbjct: 240 PWTVAARAGVNVCLRKFEPKLVFDLMRELRITHYCAAPIVHAALANAPANWRDGIDWTVR 299 Query: 316 AMVAGAPPPAAVLAKMEAMQFELTHVYGLTEVYGPAAVCAEQDEWSTLSVDQRAVQKSRQ 375 MVAGAPPPAA++AK+EAM F+L H YGLTEVYGPAA+CAEQDEW+ LS ++RAV KSRQ Sbjct: 300 GMVAGAPPPAAMVAKIEAMGFDLIHSYGLTEVYGPAAICAEQDEWAALSQEERAVLKSRQ 359 Query: 376 GVRYHLQSGVTVLSPDTMEPVAADGEEIGEIMFRGNICMKGYLKNDKATHEAFAGGWFHT 435 GVRYHLQS V VL P+TM+PVAADGE+IGEIMFRGNICMKGYLKN++AT EAFAGGWFHT Sbjct: 360 GVRYHLQSAVAVLDPETMQPVAADGEQIGEIMFRGNICMKGYLKNERATQEAFAGGWFHT 419 Query: 436 GDLGVMNADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPDEKWGET 495 GDLGVM DGYIK+KDRSKDIIISGGENISSVEVED LY HP VLAAAV+AQPDEKWGET Sbjct: 420 GDLGVMYPDGYIKLKDRSKDIIISGGENISSVEVEDALYHHPQVLAAAVIAQPDEKWGET 479 Query: 496 PCAFVELKDGANIDAAELTEFCRGHLAGFKVPKAIYFGPLPKTSTGKIQKFELRKRMKSD 555 PCAFVEL++G + AEL FC+ +LAGFKVPKAIYFGPLP+TSTGKIQKFELRKRM+SD Sbjct: 480 PCAFVELREGGTVTEAELIAFCKNNLAGFKVPKAIYFGPLPRTSTGKIQKFELRKRMQSD 539 Query: 556 SAINV 560 AI+V Sbjct: 540 KAIDV 544 >ref|YP_840669.1| acyl-CoA synthetase [Ralstonia eutropha H16] emb|CAJ95939.1| Acyl-CoA synthetase [Ralstonia eutropha H16] Length = 544 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 435/544 (79%), Positives = 478/544 (87%), Gaps = 3/544 (0%) Query: 17 DFDTGLGRNAANYAALTPIDFIARAAAVYGQRPAIIHGALRQDWDQTYRRTRRLASALQR 76 DFD+GL RNAAN+ LTPIDF+ RAA VYGQR AI+HG LRQ+W TY R RRLASAL R Sbjct: 4 DFDSGLARNAANFVPLTPIDFLVRAAEVYGQRLAIVHGPLRQNWRDTYARARRLASALAR 63 Query: 77 LGIGKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLRHGEAKVLLID 136 GIGK DTV+A+LPNTPAMVEAHFGVPMAGAVLNALNIRLDA ++VFMLRHGEA+VLL D Sbjct: 64 AGIGKGDTVAALLPNTPAMVEAHFGVPMAGAVLNALNIRLDAANLVFMLRHGEARVLLAD 123 Query: 137 SEFAALAQQLRTQLPALKIVEVFDVLGPPPVPGERFGHLEYEALLADGDENFEWQWPADE 196 +EFA LA+Q+ ++P LK++ V DVLGP P FG +YEA LA GD ++ W PADE Sbjct: 124 TEFADLARQMALEIPGLKVIAVHDVLGPQEAP---FGDTDYEAFLASGDSDYAWHMPADE 180 Query: 197 WDAIALNYTSGTTGDPKGVVYHHRGAALNAVSNILEWDLPKHPVYLWTLPMFHCNGWCFP 256 W+AIALNYTSGTTGDPKGVVYHHRGAA+NAVSNILEWDLPKHPVYLWTLPMFHCNGWCFP Sbjct: 181 WEAIALNYTSGTTGDPKGVVYHHRGAAINAVSNILEWDLPKHPVYLWTLPMFHCNGWCFP 240 Query: 257 WTVAARAGVNVCLRKFDPKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAGIRGPVKA 316 WTVAARAGVNVCLRKF+P+LVFDL+ E G+THYCAAPIVH AL NAP WR G+RGPV+ Sbjct: 241 WTVAARAGVNVCLRKFEPRLVFDLMREEGVTHYCAAPIVHTALVNAPAAWREGVRGPVRG 300 Query: 317 MVAGAPPPAAVLAKMEAMQFELTHVYGLTEVYGPAAVCAEQDEWSTLSVDQRAVQKSRQG 376 MVAGAPPPAAVLA+MEAM FELTHVYGLTEVYGPAAVCAEQD+WSTLS RAV+K+RQG Sbjct: 301 MVAGAPPPAAVLAQMEAMGFELTHVYGLTEVYGPAAVCAEQDDWSTLSEQDRAVRKARQG 360 Query: 377 VRYHLQSGVTVLSPDTMEPVAADGEEIGEIMFRGNICMKGYLKNDKATHEAFAGGWFHTG 436 VRYHLQS V VL PD+M+PV ADGE IGEIMFRGNICMKGYLKN+KAT EAFAGGWFHTG Sbjct: 361 VRYHLQSQVAVLDPDSMQPVPADGETIGEIMFRGNICMKGYLKNEKATREAFAGGWFHTG 420 Query: 437 DLGVMNADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPDEKWGETP 496 DLGV DGYIKIKDRSKDIIISGGENISSVEVED LYRHPAVLAAAVVAQPD +WGETP Sbjct: 421 DLGVCMPDGYIKIKDRSKDIIISGGENISSVEVEDALYRHPAVLAAAVVAQPDARWGETP 480 Query: 497 CAFVELKDGANIDAAELTEFCRGHLAGFKVPKAIYFGPLPKTSTGKIQKFELRKRMKSDS 556 CAFVELKDGA++ A EL CR LAGFKVPKA+YFGPLPKTSTGKIQKFELR+++KSDS Sbjct: 481 CAFVELKDGASVSAEELIAHCRTLLAGFKVPKAVYFGPLPKTSTGKIQKFELRRKVKSDS 540 Query: 557 AINV 560 AI+V Sbjct: 541 AIDV 544 >ref|YP_004681305.1| acyl-CoA synthetase [Cupriavidus necator N-1] gb|AEI80073.1| acyl-CoA synthetase [Cupriavidus necator N-1] Length = 544 Score = 889 bits (2298), Expect = 0.0, Method: Composition-based stats. Identities = 434/544 (79%), Positives = 477/544 (87%), Gaps = 3/544 (0%) Query: 17 DFDTGLGRNAANYAALTPIDFIARAAAVYGQRPAIIHGALRQDWDQTYRRTRRLASALQR 76 DFD+GL RNAAN+ LTPIDF+ RAA VYG+R AI+HG LRQ+W TY R RRLASAL R Sbjct: 4 DFDSGLARNAANFVPLTPIDFLVRAAEVYGERLAIVHGPLRQNWRDTYVRARRLASALAR 63 Query: 77 LGIGKNDTVSAMLPNTPAMVEAHFGVPMAGAVLNALNIRLDAESIVFMLRHGEAKVLLID 136 GIGK DTV+A+LPNTPAMVEAHFGVPMAGAVLNALNIRLDA ++VFMLRHGEA+VLL D Sbjct: 64 AGIGKGDTVAALLPNTPAMVEAHFGVPMAGAVLNALNIRLDAANLVFMLRHGEARVLLAD 123 Query: 137 SEFAALAQQLRTQLPALKIVEVFDVLGPPPVPGERFGHLEYEALLADGDENFEWQWPADE 196 +EFA LA+Q+ ++P LK++ V DVLGP P FG +YEA LA GD ++ W PADE Sbjct: 124 TEFADLARQMALEIPGLKVIAVHDVLGPQEAP---FGDTDYEAFLASGDPDYAWHMPADE 180 Query: 197 WDAIALNYTSGTTGDPKGVVYHHRGAALNAVSNILEWDLPKHPVYLWTLPMFHCNGWCFP 256 W+AIALNYTSGTTGDPKGVVYHHRGAA+NAVSNILEWDLPKHPVYLWTLPMFHCNGWCFP Sbjct: 181 WEAIALNYTSGTTGDPKGVVYHHRGAAINAVSNILEWDLPKHPVYLWTLPMFHCNGWCFP 240 Query: 257 WTVAARAGVNVCLRKFDPKLVFDLIAEHGITHYCAAPIVHAALANAPEGWRAGIRGPVKA 316 WTVAARAGVNVCLRKF+P+LVFDL+ G+THYCAAPIVH AL NAP WR G+RGPV+ Sbjct: 241 WTVAARAGVNVCLRKFEPRLVFDLMRAEGVTHYCAAPIVHTALVNAPAAWREGVRGPVRG 300 Query: 317 MVAGAPPPAAVLAKMEAMQFELTHVYGLTEVYGPAAVCAEQDEWSTLSVDQRAVQKSRQG 376 MVAGAPPPAAVLA+MEAM FELTHVYGLTEVYGPAAVCAEQD+WSTLS RAV+K+RQG Sbjct: 301 MVAGAPPPAAVLAQMEAMGFELTHVYGLTEVYGPAAVCAEQDDWSTLSEQDRAVKKARQG 360 Query: 377 VRYHLQSGVTVLSPDTMEPVAADGEEIGEIMFRGNICMKGYLKNDKATHEAFAGGWFHTG 436 VRYHLQS V VL PD+M+PV ADGE IGEIMFRGNICMKGYLKN+KAT EAFAGGWFHTG Sbjct: 361 VRYHLQSQVAVLDPDSMQPVPADGETIGEIMFRGNICMKGYLKNEKATREAFAGGWFHTG 420 Query: 437 DLGVMNADGYIKIKDRSKDIIISGGENISSVEVEDVLYRHPAVLAAAVVAQPDEKWGETP 496 DLGV DGYIKIKDRSKDIIISGGENISSVEVED LYRHPAVLAAAVVAQPD KWGETP Sbjct: 421 DLGVCMPDGYIKIKDRSKDIIISGGENISSVEVEDALYRHPAVLAAAVVAQPDVKWGETP 480 Query: 497 CAFVELKDGANIDAAELTEFCRGHLAGFKVPKAIYFGPLPKTSTGKIQKFELRKRMKSDS 556 CAFVELKDGA++ A EL CR LAGFKVPKA+YFGPLPKTSTGKIQKFELR+++KSDS Sbjct: 481 CAFVELKDGASVSAEELIAHCRTLLAGFKVPKAVYFGPLPKTSTGKIQKFELRRKVKSDS 540 Query: 557 AINV 560 AI+V Sbjct: 541 AIDV 544