BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1784.p         (242 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778077.1| cyclic nucleotide-binding protein [Herbaspir...   415   e-114
gb|ABK64024.1| putative transcriptional regulator [Janthinobacte...   319   2e-85
gb|ABK64109.1| putative transcriptional regulator [Janthinobacte...   317   7e-85
ref|YP_840668.1| cNMP regulatory protein [Ralstonia eutropha H16...   315   4e-84
ref|YP_004681304.1| transcriptional regulator [Cupriavidus necat...   312   3e-83

>ref|YP_003778077.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ66169.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 215/224 (95%), Positives = 218/224 (97%)

Query: 19  MAQLLQQYDWFAALAAEHRALVAATTQLTRFSADAFVARRGELSQYWIGVHEGLIKLAVY 78
           MAQLLQQYDWFAALA+EHRAL AATTQ  R++ADAFVARRGELSQYWIGVHEGLIKLAVY
Sbjct: 1   MAQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVY 60

Query: 79  NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRVSQILLVPADTFHRLMAESLPFN 138
           NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIR SQILLVPADTFH LMAESLPFN
Sbjct: 61  NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFN 120

Query: 139 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 198
           AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL
Sbjct: 121 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 180

Query: 199 TGLSRQRVNQAMRHLAELGLVEISYQSIRVVDLDGLRAFGMASL 242
           TGLSRQRVNQAMR LAELGLVEISYQSIRVVDLDGLRAFGMASL
Sbjct: 181 TGLSRQRVNQAMRRLAELGLVEISYQSIRVVDLDGLRAFGMASL 224


>gb|ABK64024.1| putative transcriptional regulator [Janthinobacterium lividum]
          Length = 233

 Score =  319 bits (818), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 159/220 (72%), Positives = 185/220 (84%)

Query: 23  LQQYDWFAALAAEHRALVAATTQLTRFSADAFVARRGELSQYWIGVHEGLIKLAVYNIDG 82
           L  +DWF AL + H++L+ A + L  + A AF+ RRGE S  WIGVH GLIKLA+YN+DG
Sbjct: 14  LDSHDWFTALDSRHQSLLRAGSVLRHYEAGAFITRRGEPSARWIGVHTGLIKLAIYNVDG 73

Query: 83  RSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRVSQILLVPADTFHRLMAESLPFNAFVI 142
           R +T SGVP GGWCGEGSV+KRE RRYDV+A+R + I+LVPAD FH L+AESL FNAFVI
Sbjct: 74  RGATFSGVPAGGWCGEGSVLKRELRRYDVVAVRAADIILVPADLFHLLLAESLSFNAFVI 133

Query: 143 GQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGLS 202
            QLNERMGQFIAT+QN+RLL VDA+VAQAIAQLFHPMLYPRTS VLELSQEEIGLLTG+S
Sbjct: 134 RQLNERMGQFIATIQNQRLLAVDAQVAQAIAQLFHPMLYPRTSSVLELSQEEIGLLTGIS 193

Query: 203 RQRVNQAMRHLAELGLVEISYQSIRVVDLDGLRAFGMASL 242
           RQRVN A+  LAEL L+ I+YQSIRVVDLDGLR +G+ASL
Sbjct: 194 RQRVNLALGRLAELKLISIAYQSIRVVDLDGLRHYGVASL 233


>gb|ABK64109.1| putative transcriptional regulator [Janthinobacterium lividum]
          Length = 233

 Score =  317 bits (813), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 158/220 (71%), Positives = 183/220 (83%)

Query: 23  LQQYDWFAALAAEHRALVAATTQLTRFSADAFVARRGELSQYWIGVHEGLIKLAVYNIDG 82
           L  +DWF AL   H+AL+ A + +  + A AF+ RRGE S +WIGVH GLIKLAVYN DG
Sbjct: 14  LDSHDWFTALDTRHQALLRAGSVIRHYEAGAFITRRGEPSAHWIGVHTGLIKLAVYNADG 73

Query: 83  RSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRVSQILLVPADTFHRLMAESLPFNAFVI 142
           R +T SGVP GGWCGEGSV+KRE RRYDV+A+R + I+LVP D FH L+AESL FNAFVI
Sbjct: 74  RGATFSGVPAGGWCGEGSVLKRELRRYDVVAVRAANIILVPVDLFHLLLAESLSFNAFVI 133

Query: 143 GQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGLS 202
            QLNERMGQFIAT+QN+RLL VDA+VAQAIAQLFHPMLYPRTS VLELSQEEIG+LTG+S
Sbjct: 134 RQLNERMGQFIATIQNQRLLAVDAQVAQAIAQLFHPMLYPRTSSVLELSQEEIGMLTGIS 193

Query: 203 RQRVNQAMRHLAELGLVEISYQSIRVVDLDGLRAFGMASL 242
           RQRVN A+  LAEL L+ I+YQSIRVVDLDGLR +G+ASL
Sbjct: 194 RQRVNLALGRLAELKLISIAYQSIRVVDLDGLRRYGVASL 233


>ref|YP_840668.1| cNMP regulatory protein [Ralstonia eutropha H16]
 emb|CAJ95938.1| cNMP regulatory protein [Ralstonia eutropha H16]
          Length = 289

 Score =  315 bits (807), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 164/229 (71%), Positives = 186/229 (81%), Gaps = 1/229 (0%)

Query: 14  PMSSPMAQLLQQYDWFAALAAEHRALVAATTQLTRFSADAFVARRGELSQYWIGVHEGLI 73
           P+S+P A +L  + WF ALA EH+AL A  T L  F+A AF+ARRGE S++WIGV  GLI
Sbjct: 62  PISAP-AAVLAGHAWFGALAPEHQALAARETLLQSFAAGAFIARRGEPSRHWIGVDSGLI 120

Query: 74  KLAVYNIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRVSQILLVPADTFHRLMAE 133
           KLAVY  DGR  T SGVP GGWCGEGSVIKRE RRYDVIAIR SQ+LLVP   F+ L+A+
Sbjct: 121 KLAVYTPDGRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRDSQVLLVPEPVFNTLLAQ 180

Query: 134 SLPFNAFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQE 193
           SLPF +FV+ QLNERMGQFIATVQN+RLL  DARVAQAIAQLFHP LYPRTS VLELSQE
Sbjct: 181 SLPFASFVVRQLNERMGQFIATVQNDRLLGADARVAQAIAQLFHPDLYPRTSPVLELSQE 240

Query: 194 EIGLLTGLSRQRVNQAMRHLAELGLVEISYQSIRVVDLDGLRAFGMASL 242
           EIGLLTGLSRQRVNQA+R LA+ G+V +SYQSIRV DL  LR FG++ L
Sbjct: 241 EIGLLTGLSRQRVNQALRRLADAGMVHLSYQSIRVTDLPRLRHFGLSEL 289


>ref|YP_004681304.1| transcriptional regulator [Cupriavidus necator N-1]
 gb|AEI80072.1| transcriptional regulator [Cupriavidus necator N-1]
          Length = 234

 Score =  312 bits (799), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 164/229 (71%), Positives = 186/229 (81%), Gaps = 1/229 (0%)

Query: 14  PMSSPMAQLLQQYDWFAALAAEHRALVAATTQLTRFSADAFVARRGELSQYWIGVHEGLI 73
           P+S+P A +L  + WF ALA EH+AL A  T L  F+A AF+ARRGE S++WIGV  GLI
Sbjct: 7   PISAP-AAVLAGHAWFGALAPEHQALAARETLLQSFAAGAFIARRGEPSRHWIGVDSGLI 65

Query: 74  KLAVYNIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRVSQILLVPADTFHRLMAE 133
           KLAVY  DGR  T SGVP GGWCGEGSVIKRE RRYDVIAIR SQ+LLVP   F+ L+A+
Sbjct: 66  KLAVYTPDGRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRDSQVLLVPEPVFNMLLAQ 125

Query: 134 SLPFNAFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQE 193
           SLPF +FV+ QLNERMGQFIATVQN+RLL  DARVAQAIAQLFHP LYPRTS VLELSQE
Sbjct: 126 SLPFASFVVRQLNERMGQFIATVQNDRLLGADARVAQAIAQLFHPDLYPRTSPVLELSQE 185

Query: 194 EIGLLTGLSRQRVNQAMRHLAELGLVEISYQSIRVVDLDGLRAFGMASL 242
           EIGLLTGLSRQRVNQA+R LA+ G+V +SYQSIRV DL  LR FG++ L
Sbjct: 186 EIGLLTGLSRQRVNQALRRLADAGMVHLSYQSIRVTDLPRLRHFGLSEL 234