BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1783.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778076.1| hypothetical protein Hsero_4702 [Herbaspiril... 261 5e-68 gb|ACS75343.1| hypothetical protein [Janthinobacterium lividum] 102 3e-20 gb|ABK64112.1| conserved hypothetical protein [Janthinobacterium... 102 5e-20 ref|YP_002980001.1| hypothetical protein Rpic12D_0017 [Ralstonia... 84 2e-14 ref|YP_001897619.1| hypothetical protein Rpic_0022 [Ralstonia pi... 82 5e-14 >ref|YP_003778076.1| hypothetical protein Hsero_4702 [Herbaspirillum seropedicae SmR1] gb|ADJ66168.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 232 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 182/232 (78%), Positives = 198/232 (85%), Gaps = 12/232 (5%) Query: 1 MAIITHHHLLLRELRFAAPARVRVWKGAAILKSGGVAVELREGESFTVPPFVRFSCLAHP 60 MAI+THHHL L +LRFAAPARVRVWKGAA LKSGGVAVEL EGESFTVP FVRF+CLAHP Sbjct: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELGEGESFTVPSFVRFACLAHP 60 Query: 61 RVTAQGMRPAVWSLALETEASADMERAADTSKPHARRLAAAIFAQPCADWCAERIAGEWQ 120 RV+AQGMRPAVWSLALET++SAD+ERAADTSKPHARRLAAAIFAQP A WCAERIAG+WQ Sbjct: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 Query: 121 ISTARLRALLFAEGESLRSLVREQRVAWVLAQLARMED----AGASPAAAGFASLSALQR 176 +STARLRALLFAEGESLRSLVREQRVAWVLAQLARM+D + +PAAAGFA+L ALQR Sbjct: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFATLPALQR 180 Query: 177 ACQDLIGLPPEIAGRALSLLSSHPRPSVVLQ--------DDQARQPRYRPYF 220 ACQDLIGLPP A RA+SLLSS P+ + D RQPRYRPYF Sbjct: 181 ACQDLIGLPPGTASRAISLLSSSVAPAALPAIGAAQHSGGDAPRQPRYRPYF 232 >gb|ACS75343.1| hypothetical protein [Janthinobacterium lividum] Length = 197 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 15/196 (7%) Query: 1 MAIITHHHLLLRELRFAAPARVRVWKGAAILKSGGVAVELREGESFTVPPFVRFSCLAHP 60 MA+++ H L L LRF RV V +G L + +L G+SF VP F+RF+C P Sbjct: 1 MALVSDHPLHLLGLRFPLRLRVTVRQGFVTLHNEITTKKLASGDSFVVPAFLRFACDVMP 60 Query: 61 RVTAQGMRPAVWSLALETEASADMERAADTSKPHARRLAAAIFAQPCADWCAERIAGEWQ 120 +G +PAV++LALE +A+ + K ++ LA IF P W A R+A WQ Sbjct: 61 ---GRG-KPAVFTLALEGDAT---DAGHGGGKRWSQALAQHIFDTPQGKWTAARLAALWQ 113 Query: 121 ISTARLRALLFAEGESLRSLVREQRVAWVLAQLARME--------DAGASPAAAGFASLS 172 ++ + RA LF+EGE+L SLVREQR+A L A+ + D A +GFAS+ Sbjct: 114 VTPHKARARLFSEGEALLSLVREQRLAHALHTAAQADADGVHGERDLAQVAAGSGFASIP 173 Query: 173 ALQRACQDLIGLPPEI 188 A AC D+ G+ P + Sbjct: 174 AFCDACVDVAGVRPSL 189 >gb|ABK64112.1| conserved hypothetical protein [Janthinobacterium lividum] Length = 197 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 106/196 (54%), Gaps = 15/196 (7%) Query: 1 MAIITHHHLLLRELRFAAPARVRVWKGAAILKSGGVAVELREGESFTVPPFVRFSCLAHP 60 MA+++ H L L LRF RV V +G L + +L G+SF VP F+RF+C P Sbjct: 1 MALVSDHPLHLLGLRFPLRLRVTVRQGFVTLHNEIATKKLASGDSFVVPAFLRFACDVMP 60 Query: 61 RVTAQGMRPAVWSLALETEASADMERAADTSKPHARRLAAAIFAQPCADWCAERIAGEWQ 120 +G +PAV++LALE A+ + K ++ LA IF P W A R+A WQ Sbjct: 61 ---GRG-KPAVFTLALE---GAETDGGHGGGKRWSQALAQHIFDTPQGKWTAARLAALWQ 113 Query: 121 ISTARLRALLFAEGESLRSLVREQRVAWVLAQLARME--------DAGASPAAAGFASLS 172 ++ + RA LF+EGE+L SLVREQR+A L A+ + D A +GFAS+ Sbjct: 114 VTPHKARARLFSEGEALLSLVREQRLAHALHTAAQADADGEDGERDLAQVAAGSGFASIP 173 Query: 173 ALQRACQDLIGLPPEI 188 A AC D+ G+ P + Sbjct: 174 AFCDACVDVAGVRPSL 189 >ref|YP_002980001.1| hypothetical protein Rpic12D_0017 [Ralstonia pickettii 12D] gb|ACS61329.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 223 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 12/192 (6%) Query: 1 MAIITHHHLLLRELRFAAPARVRVWKGAAILKSGGVAVELREGESFTVPPFVRFSCLAHP 60 M +I+ H+ L LRF RV+ +G L+ E+R G F VP F F C Sbjct: 1 MPLISRAHVRLSRLRFPFAVRVQSEQGTVCLRDANGRREVRPGNPFVVPAFAHFGC---- 56 Query: 61 RVTAQGMRPAVWSLALETEASADMERAADTSKPHARRLAAAIFAQPCADWCAERIAGEWQ 120 + +P + +A A KP AR A +F P W A ++ WQ Sbjct: 57 EIPGTLWQPCAITFNAVPDAGCPRMAAIQHDKPWARAFATLVFEHPVQAWNAAMLSHCWQ 116 Query: 121 ISTARLRALLFAEGESLRSLVREQRVAWVLAQLARM--------EDAGASPAAAGFASLS 172 ++RA LFAEGE+L +LVREQR AWVL +LA E A AG + Sbjct: 117 ACPRQVRARLFAEGEALHALVREQRAAWVLYRLAHTCGNDEPEAEALHALARRAGLRNAR 176 Query: 173 ALQRACQDLIGL 184 L C L G+ Sbjct: 177 TLNETCASLFGV 188 >ref|YP_001897619.1| hypothetical protein Rpic_0022 [Ralstonia pickettii 12J] ref|ZP_07674916.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|ACD25187.1| conserved hypothetical protein [Ralstonia pickettii 12J] gb|EFP66514.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 223 Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 62/192 (32%), Positives = 83/192 (43%), Gaps = 12/192 (6%) Query: 1 MAIITHHHLLLRELRFAAPARVRVWKGAAILKSGGVAVELREGESFTVPPFVRFSCLAHP 60 M +I+ H+ L LRF RV+ +G L+ E+R G F VP F F C Sbjct: 1 MPLISRAHVRLSRLRFPFAVRVQSEQGTVCLRDANGRREVRPGNPFVVPAFAHFGC---- 56 Query: 61 RVTAQGMRPAVWSLALETEASADMERAADTSKPHARRLAAAIFAQPCADWCAERIAGEWQ 120 + +P + +A A KP AR A +F P W A ++ WQ Sbjct: 57 EIPGTVWQPCAITFKAVPDAGCPRMAAIQHDKPWARAFATLVFEHPVQAWNAALLSHCWQ 116 Query: 121 ISTARLRALLFAEGESLRSLVREQRVAWVLAQLARM--------EDAGASPAAAGFASLS 172 ++RA LFAEGE+L +LVREQR AW L +LA E A AG + Sbjct: 117 ACPRQVRARLFAEGEALHALVREQRAAWALYRLAHTCGNDEPEAEALHALARRAGLRNAR 176 Query: 173 ALQRACQDLIGL 184 L C L G+ Sbjct: 177 TLNETCASLFGV 188