BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1780.p (199 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778072.1| two component response regulator protein [He... 350 9e-95 ref|ZP_05111218.1| hypothetical protein LDG_2786 [Legionella dra... 188 3e-46 ref|YP_002433810.1| response regulator receiver modulated metal ... 184 6e-45 ref|YP_856303.1| sensory box protein [Aeromonas hydrophila subsp... 182 3e-44 ref|YP_003554680.1| putative PAS/PAC sensor protein [Aminobacter... 180 1e-43 >ref|YP_003778072.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66164.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 199 Score = 350 bits (897), Expect = 9e-95, Method: Composition-based stats. Identities = 171/199 (85%), Positives = 183/199 (91%) Query: 1 MPVSEPNKIYQEVIDALIALHRLTDGYTPNHEDQTAELAVMIGRHLALPAERIDVLHMAA 60 MPVSE NKIYQEVIDA+IA+HRLTDGYTPNHEDQTAELAVMIGRHL L ERID LHMA+ Sbjct: 1 MPVSESNKIYQEVIDAMIAVHRLTDGYTPNHEDQTAELAVMIGRHLDLATERIDALHMAS 60 Query: 61 QVHDIGKARIPLDLLTKPGRITADEYGVLKTHVQFGYEILNKISFPFNLAEIVWCHHEYL 120 QVHDIGKARIPL LLTKPGRI+ +EY VLKTHVQFGYEILNKISFPFNLAEIV CHHEYL Sbjct: 61 QVHDIGKARIPLALLTKPGRISVEEYDVLKTHVQFGYEILNKISFPFNLAEIVHCHHEYL 120 Query: 121 DGSGYPRGIGGDALPLEARILTVADIVESMSADRPYRKSLGMAVALEEIQRQSGSRLDPV 180 DGSGYPRGI GD +PLEARILTVADIVESMSADRPYRKSLGM+ AL+EIQRQSG RLD V Sbjct: 121 DGSGYPRGISGDEIPLEARILTVADIVESMSADRPYRKSLGMSAALDEIQRQSGVRLDAV 180 Query: 181 VVDACLHVVQQHNWRPVTN 199 VVDACL VV++ NWRP++N Sbjct: 181 VVDACLDVVKRSNWRPISN 199 >ref|ZP_05111218.1| hypothetical protein LDG_2786 [Legionella drancourtii LLAP12] gb|EET11095.1| hypothetical protein LDG_2786 [Legionella drancourtii LLAP12] Length = 450 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 89/176 (50%), Positives = 126/176 (71%) Query: 10 YQEVIDALIALHRLTDGYTPNHEDQTAELAVMIGRHLALPAERIDVLHMAAQVHDIGKAR 69 ++E++ A+ L D YT H+++ A LA I + L L +E+I + +AAQVHDIGK Sbjct: 262 FKELVAAISTALELRDAYTAGHQNKVAYLAKAIAQELNLSSEQIQCIELAAQVHDIGKIG 321 Query: 70 IPLDLLTKPGRITADEYGVLKTHVQFGYEILNKISFPFNLAEIVWCHHEYLDGSGYPRGI 129 IP ++LTKP +++ E+ ++KTH + GY+IL I FP+ +AEIVW HHE LDGSGYPRG+ Sbjct: 322 IPFEILTKPTKLSELEFELIKTHCKAGYDILKGIHFPWPIAEIVWQHHERLDGSGYPRGL 381 Query: 130 GGDALPLEARILTVADIVESMSADRPYRKSLGMAVALEEIQRQSGSRLDPVVVDAC 185 GD + LEA+I+ VAD V+SMS+ RPYR +LG+ AL++IQ+ SG DP VV+AC Sbjct: 382 KGDQITLEAKIIAVADTVDSMSSHRPYRPALGINAALDQIQKFSGVLFDPEVVNAC 437 >ref|YP_002433810.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] gb|ACL06342.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] Length = 437 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 127/184 (69%) Query: 8 KIYQEVIDALIALHRLTDGYTPNHEDQTAELAVMIGRHLALPAERIDVLHMAAQVHDIGK 67 K + I A+ + D YT +H+ + +LAV IG + + ++D L MA +HDIGK Sbjct: 246 KAMEGTITAMANTLDIRDPYTADHQRRVVKLAVAIGEEMDISKGKMDGLRMAGVIHDIGK 305 Query: 68 ARIPLDLLTKPGRITADEYGVLKTHVQFGYEILNKISFPFNLAEIVWCHHEYLDGSGYPR 127 IPL +L KPG+IT E+ ++KTH + GY+IL K+ FP+ +A+IV HHE LDGSGYP+ Sbjct: 306 IAIPLAILNKPGKITDTEFTLIKTHSEVGYDILKKVEFPWPIADIVVQHHERLDGSGYPK 365 Query: 128 GIGGDALPLEARILTVADIVESMSADRPYRKSLGMAVALEEIQRQSGSRLDPVVVDACLH 187 G+ GD + LEA+IL VAD+VE+MS+ RPYR +LGM ALEE+ + G+ DP VVDAC+ Sbjct: 366 GLSGDEILLEAKILAVADVVEAMSSHRPYRPALGMEKALEEVITKKGTIFDPAVVDACVK 425 Query: 188 VVQQ 191 V+++ Sbjct: 426 VIKR 429 >ref|YP_856303.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gb|ABK38764.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 508 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 129/186 (69%) Query: 11 QEVIDALIALHRLTDGYTPNHEDQTAELAVMIGRHLALPAERIDVLHMAAQVHDIGKARI 70 ++ + A+ A+ D YT H+ A LA+ IGR L L +R+ L++ A VHDIGK ++ Sbjct: 315 EDALGAIAAVLEQRDPYTAGHQKHVATLALAIGRELKLDEKRLRGLYLGAMVHDIGKIQV 374 Query: 71 PLDLLTKPGRITADEYGVLKTHVQFGYEILNKISFPFNLAEIVWCHHEYLDGSGYPRGIG 130 PL++LTKPGR+T E+ ++K H GY++L I+ P+ +A+++ HHE++DGSGYP G+ Sbjct: 375 PLNILTKPGRLTPQEFNLVKEHPGAGYQVLKDIALPWPVAQMIHQHHEFIDGSGYPAGLK 434 Query: 131 GDALPLEARILTVADIVESMSADRPYRKSLGMAVALEEIQRQSGSRLDPVVVDACLHVVQ 190 G+ + LEARILTVADIVESMS+DRPYR +LG+ A I GS+LD VVDACL ++ Sbjct: 435 GEQILLEARILTVADIVESMSSDRPYRAALGIPQARAHIIELRGSKLDAAVVDACLRILD 494 Query: 191 QHNWRP 196 + ++ P Sbjct: 495 RGDFTP 500 >ref|YP_003554680.1| putative PAS/PAC sensor protein [Aminobacterium colombiense DSM 12261] gb|ADE57956.1| putative PAS/PAC sensor protein [Aminobacterium colombiense DSM 12261] Length = 884 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 7 NKIYQEVIDALIALHRLTDGYTPNHEDQTAELAVMIGRHLALPAERIDVLHMAAQVHDIG 66 +K ++E + L + D YT H+ + A LA I + LP R++ + AA VHDIG Sbjct: 684 SKTFKETFHLMSRLLEIKDPYTAGHQQKVAYLAKAIAERMELPHNRVEAVFYAALVHDIG 743 Query: 67 KARIPLDLLTKPGRITADEYGVLKTHVQFGYEILNKISFPFNLAEIVWCHHEYLDGSGYP 126 K +P +L+KPGR++ E+ ++K H +FG EIL+ I+FP+ +A+IV HHE++DG+GYP Sbjct: 744 KIPVPSSILSKPGRLSEAEFAIIKNHARFGAEILSAINFPWPIADIVLQHHEHVDGTGYP 803 Query: 127 RGIGGDALPLEARILTVADIVESMSADRPYRKSLGMAVALEEIQRQSGSRLDPVVVDACL 186 G+ GD + LEA+I+ V+D+VE+MS+ RPYR +LG+ ALEEIQ++ D VVD CL Sbjct: 804 HGLKGDEISLEAKIVCVSDVVEAMSSFRPYRPALGIEEALEEIQKKRQIWFDSRVVDVCL 863 Query: 187 HVVQQHN---WRPVT 198 H+ ++ W+ +T Sbjct: 864 HIFKETGGEFWKEIT 878