BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1773.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778067.1| hypothetical protein Hsero_4693 [Herbaspiril... 258 2e-67 ref|YP_001795525.1| hypothetical protein RALTA_A0130 [Cupriavidu... 226 9e-58 ref|YP_004684028.1| hypothetical protein CNE_1c01780 [Cupriavidu... 221 4e-56 ref|YP_724707.1| prolyl-tRNA synthetase domain-containing protei... 220 5e-56 ref|YP_582274.1| hypothetical protein Rmet_0119 [Cupriavidus met... 216 7e-55 >ref|YP_003778067.1| hypothetical protein Hsero_4693 [Herbaspirillum seropedicae SmR1] gb|ADJ66159.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 184 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 147/170 (86%), Positives = 159/170 (93%) Query: 3 AMNEPAAALPSSAQRVADLLAAMGHDKPVTMLPSTGRTSAEAAAAVGCSVAEIAKSIIFR 62 AM + AA LPSSAQRVADLL +MGHDKPV MLPSTGRTSAEAAAAVGC VAEIAKSIIFR Sbjct: 15 AMTDTAAPLPSSAQRVADLLVSMGHDKPVVMLPSTGRTSAEAAAAVGCDVAEIAKSIIFR 74 Query: 63 RVSDGAPVLVIASGANRVDEAKVTALTGPLGKADAKFVRDTTGYAIGGVCPIGHVVKPVM 122 R++D APVLVIASGANRVDEAKVTALTGPLGKADAKFVR+ TGYAIGGVCP+GHVVKPVM Sbjct: 75 RLADDAPVLVIASGANRVDEAKVTALTGPLGKADAKFVREKTGYAIGGVCPVGHVVKPVM 134 Query: 123 LIDQDLFNFDSVWAAAGHPHAVFNLTAAQLEKMTGGTVADVRLDAAPTAN 172 LID+DLFNFDS+WAAAGHPHA+F+LTAAQLEKMTGG VADVRL+A P A+ Sbjct: 135 LIDRDLFNFDSIWAAAGHPHALFSLTAAQLEKMTGGAVADVRLEAPPPAH 184 >ref|YP_001795525.1| hypothetical protein RALTA_A0130 [Cupriavidus taiwanensis LMG 19424] emb|CAP62803.1| conserved hypothetical protein; YbaK/prolyl-tRNA synthetase associated region [Cupriavidus taiwanensis LMG 19424] Length = 172 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 125/160 (78%), Positives = 139/160 (86%) Query: 4 MNEPAAALPSSAQRVADLLAAMGHDKPVTMLPSTGRTSAEAAAAVGCSVAEIAKSIIFRR 63 M P ALP SAQRVADLLA +GHD+PV MLP+TG+TSAEAAA +GCSVAEIAKSIIFRR Sbjct: 1 MTMPDQALPESAQRVADLLAGIGHDRPVVMLPATGKTSAEAAAGLGCSVAEIAKSIIFRR 60 Query: 64 VSDGAPVLVIASGANRVDEAKVTALTGPLGKADAKFVRDTTGYAIGGVCPIGHVVKPVML 123 V+D APVLVIASG+NRVDEAKV A G LGKADA+FVR+ TGYAIGGVCPIGH V PVML Sbjct: 61 VADDAPVLVIASGSNRVDEAKVAARVGALGKADARFVREKTGYAIGGVCPIGHAVAPVML 120 Query: 124 IDQDLFNFDSVWAAAGHPHAVFNLTAAQLEKMTGGTVADV 163 +DQDLF +DS+WAAAGHPHAVFNLT QL++MTG VADV Sbjct: 121 LDQDLFRYDSLWAAAGHPHAVFNLTPHQLQQMTGAEVADV 160 >ref|YP_004684028.1| hypothetical protein CNE_1c01780 [Cupriavidus necator N-1] gb|AEI75547.1| hypothetical protein CNE_1c01780 [Cupriavidus necator N-1] Length = 166 Score = 221 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 123/154 (79%), Positives = 137/154 (88%) Query: 10 ALPSSAQRVADLLAAMGHDKPVTMLPSTGRTSAEAAAAVGCSVAEIAKSIIFRRVSDGAP 69 ALP SAQRVADLLA +GHD+PV MLP+TG+TSAEAAA +GCSVAEIAKSIIFRRV+D AP Sbjct: 7 ALPESAQRVADLLAGLGHDRPVVMLPATGKTSAEAAAGLGCSVAEIAKSIIFRRVADDAP 66 Query: 70 VLVIASGANRVDEAKVTALTGPLGKADAKFVRDTTGYAIGGVCPIGHVVKPVMLIDQDLF 129 VLVIASG+NRVDEAKV A G LGKADA+FVR+ TGYAIGGVCPIGH V PVML+DQDLF Sbjct: 67 VLVIASGSNRVDEAKVAAHVGALGKADARFVREKTGYAIGGVCPIGHAVAPVMLLDQDLF 126 Query: 130 NFDSVWAAAGHPHAVFNLTAAQLEKMTGGTVADV 163 +DS+WAAAGHPHAVFNLT QL++MTG VADV Sbjct: 127 RYDSLWAAAGHPHAVFNLTPQQLQQMTGAEVADV 160 >ref|YP_724707.1| prolyl-tRNA synthetase domain-containing protein [Ralstonia eutropha H16] emb|CAJ91339.1| uncharacterized conserved protein containing prolyl-tRNA synthetase domain [Ralstonia eutropha H16] Length = 166 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 123/154 (79%), Positives = 137/154 (88%) Query: 10 ALPSSAQRVADLLAAMGHDKPVTMLPSTGRTSAEAAAAVGCSVAEIAKSIIFRRVSDGAP 69 ALP SAQRVADLLA +GHD+PV MLP+TG+TSAEAAA +GCSVAEIAKSIIFRRV+D AP Sbjct: 7 ALPESAQRVADLLAGLGHDRPVVMLPATGKTSAEAAAGLGCSVAEIAKSIIFRRVADDAP 66 Query: 70 VLVIASGANRVDEAKVTALTGPLGKADAKFVRDTTGYAIGGVCPIGHVVKPVMLIDQDLF 129 VLVIASG+NRVDEAKV A G LGKADA+FVR+ TGYAIGGVCPIGH V PVML+DQDLF Sbjct: 67 VLVIASGSNRVDEAKVAARVGALGKADARFVREKTGYAIGGVCPIGHAVAPVMLLDQDLF 126 Query: 130 NFDSVWAAAGHPHAVFNLTAAQLEKMTGGTVADV 163 +DS+WAAAGHPHAVFNLT QL++MTG VADV Sbjct: 127 RYDSLWAAAGHPHAVFNLTPHQLQQMTGAEVADV 160 >ref|YP_582274.1| hypothetical protein Rmet_0119 [Cupriavidus metallidurans CH34] gb|ABF07005.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 165 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 120/156 (76%), Positives = 133/156 (85%) Query: 8 AAALPSSAQRVADLLAAMGHDKPVTMLPSTGRTSAEAAAAVGCSVAEIAKSIIFRRVSDG 67 + LP +AQRVADLL +GHD+PV MLP+TG+TSAEAAA +GC+VAEIAKSIIFRRV D Sbjct: 4 SPTLPDAAQRVADLLVGIGHDRPVVMLPATGKTSAEAAAGLGCTVAEIAKSIIFRRVEDD 63 Query: 68 APVLVIASGANRVDEAKVTALTGPLGKADAKFVRDTTGYAIGGVCPIGHVVKPVMLIDQD 127 PVLVIASG+NRVDEAKV A G LGKADAKFVR+ TGYAIGGVCPIGH V PVML+DQD Sbjct: 64 VPVLVIASGSNRVDEAKVAARVGALGKADAKFVREKTGYAIGGVCPIGHAVAPVMLLDQD 123 Query: 128 LFNFDSVWAAAGHPHAVFNLTAAQLEKMTGGTVADV 163 LF +DSVWAAAGHPHAVFNLT QL+ MTG VADV Sbjct: 124 LFQYDSVWAAAGHPHAVFNLTPQQLQAMTGAEVADV 159