BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1766.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778060.1| transcription regulator protein [Herbaspiril...   219   1e-55
ref|YP_004754914.1| putative transcriptional regulator [Collimon...   175   2e-42
ref|ZP_08272803.1| putative transcriptional regulator LiuR of le...   160   9e-38
ref|ZP_00945554.1| probable transcriptional regulator [Ralstonia...   156   1e-36
emb|CAQ56571.1| hypothetical protein RSMK04076 [Ralstonia solana...   156   1e-36

>ref|YP_003778060.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ66152.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  219 bits (557), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/142 (92%), Positives = 133/142 (93%), Gaps = 5/142 (3%)

Query: 1   MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60
           MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL
Sbjct: 1   MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60

Query: 61  GFTLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120
           GFTL+EIKDLIDMYESPKDTQ QLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR
Sbjct: 61  GFTLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120

Query: 121 QLLADAKP-----KIKRKAVAA 137
           QLL D KP     K +RKAVAA
Sbjct: 121 QLLTDGKPRPLGSKPRRKAVAA 142


>ref|YP_004754914.1| putative transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK64091.1| putative transcriptional regulator LiuR of leucine degradation
           pathway, MerR family [Collimonas fungivorans Ter331]
          Length = 134

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/127 (73%), Positives = 111/127 (87%)

Query: 1   MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60
           MPTYTITELA EF ITPRAIRFYED G+L+PKR+G GGR+RVY  RERTRLKLTLRGKRL
Sbjct: 1   MPTYTITELAREFDITPRAIRFYEDQGLLSPKRDGAGGRNRVYAGRERTRLKLTLRGKRL 60

Query: 61  GFTLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120
           G TL+EIK L+DMY+SPKD+ PQL+ FL +L +HRE LEQQRED+E+TL+EI AHE+ECR
Sbjct: 61  GLTLSEIKSLVDMYDSPKDSAPQLELFLQVLARHREHLEQQREDIEVTLAEITAHEDECR 120

Query: 121 QLLADAK 127
           +LL+  +
Sbjct: 121 RLLSSGE 127


>ref|ZP_08272803.1| putative transcriptional regulator LiuR of leucine degradation
           pathway, MerR family [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33734.1| putative transcriptional regulator LiuR of leucine degradation
           pathway, MerR family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 142

 Score =  160 bits (404), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 85/123 (69%), Positives = 103/123 (83%)

Query: 1   MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60
           M TYTITEL+ EF ITPRAIRFYED G+L+P REG  GR RVY ARERTRLKLTLRGKRL
Sbjct: 1   MSTYTITELSREFDITPRAIRFYEDQGLLSPSREGASGRVRVYSARERTRLKLTLRGKRL 60

Query: 61  GFTLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120
           G TL+EIK L+DMYESP+DT  Q++ F+ +L QHR  LE QRED+++TL+EI+AHE +CR
Sbjct: 61  GLTLSEIKSLVDMYESPRDTIAQMKHFMEVLGQHRLTLEMQREDIDVTLAEISAHEAQCR 120

Query: 121 QLL 123
           ++L
Sbjct: 121 KVL 123


>ref|ZP_00945554.1| probable transcriptional regulator [Ralstonia solanacearum UW551]
 ref|YP_002258510.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
 gb|EAP71994.1| probable transcriptional regulator [Ralstonia solanacearum UW551]
 emb|CAQ60433.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
          Length = 165

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/125 (67%), Positives = 101/125 (80%)

Query: 3   TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62
           ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG 
Sbjct: 28  SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87

Query: 63  TLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122
           +L EIK+++D+YESP+DT PQL+RFL  L QHR  L QQ EDL   L+EI  HE +CRQL
Sbjct: 88  SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRQL 147

Query: 123 LADAK 127
           L +A+
Sbjct: 148 LDEAR 152


>emb|CAQ56571.1| hypothetical protein RSMK04076 [Ralstonia solanacearum MolK2]
          Length = 165

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/125 (67%), Positives = 101/125 (80%)

Query: 3   TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62
           ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG 
Sbjct: 28  SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87

Query: 63  TLAEIKDLIDMYESPKDTQPQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122
           +L EIK+++D+YESP+DT PQL+RFL  L QHR  L QQ EDL   L+EI  HE +CRQL
Sbjct: 88  SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRQL 147

Query: 123 LADAK 127
           L +A+
Sbjct: 148 LDEAR 152