BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1764.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778057.1| hypothetical protein Hsero_4683 [Herbaspiril...   259   6e-68
emb|CCA88260.1| conserved hypothetical protein [Ralstonia syzygi...   160   6e-38
emb|CCA88264.1| conserved hypothetical protein [Ralstonia syzygi...   155   2e-36
emb|CBJ40750.1| hypothethical protein [Ralstonia solanacearum CM...   154   4e-36
emb|CBJ40752.1| hypothethical protein [Ralstonia solanacearum CM...   132   2e-29

>ref|YP_003778057.1| hypothetical protein Hsero_4683 [Herbaspirillum seropedicae SmR1]
 gb|ADJ66149.1| hypothetical protein Hsero_4683 [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  259 bits (663), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 122/145 (84%), Positives = 135/145 (93%)

Query: 1   MSQGMLDFAEPDVSPQILMPTATAAELGGALRLALSRSRNVSVPEFQEILKSGIVQKNAK 60
           M+QGMLDFA+PD+SPQILMPT T AELGGALRLALS+SR V+VPEFQEILKSGIVQKNAK
Sbjct: 21  MAQGMLDFADPDLSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAK 80

Query: 61  ERQALLMQQYGYKNRKAMMRKMACCWITANSGNIEIKPTHHKNIDGYSGISNDGPEILYV 120
           ERQAL+MQ++GYKNRKAMMRKMACCWITA+   IEIKPTHHKNIDGYSGISNDGPEI+++
Sbjct: 81  ERQALIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFI 140

Query: 121 DTNSSDTELGAALMEGFARCTSAVP 145
            TNS D ELGAAL EGF+RCTSAVP
Sbjct: 141 STNSGDAELGAALKEGFSRCTSAVP 165


>emb|CCA88260.1| conserved hypothetical protein [Ralstonia syzygii R24]
          Length = 165

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 96/144 (66%)

Query: 1   MSQGMLDFAEPDVSPQILMPTATAAELGGALRLALSRSRNVSVPEFQEILKSGIVQKNAK 60
           MSQG+LD+ +PDV+P  L      AELG ALR AL  S+ VS  +FQ + KSG++Q   +
Sbjct: 22  MSQGILDYVDPDVAPHYLESGVNDAELGEALRSALRESKCVSAEDFQNLFKSGVIQNAER 81

Query: 61  ERQALLMQQYGYKNRKAMMRKMACCWITANSGNIEIKPTHHKNIDGYSGISNDGPEILYV 120
           ER    M +YGYK ++AM + M CCWI    G +EIKPT HK++D Y+G+SN GP I++V
Sbjct: 82  ERVEWAMARYGYKTKRAMYKDMRCCWIKFQGGVVEIKPTFHKSMDCYTGLSNGGPGIIHV 141

Query: 121 DTNSSDTELGAALMEGFARCTSAV 144
               SD ELGAAL EGF RC  A+
Sbjct: 142 RDAVSDAELGAALREGFGRCAGAI 165


>emb|CCA88264.1| conserved hypothetical protein [Ralstonia syzygii R24]
          Length = 166

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/144 (54%), Positives = 99/144 (68%)

Query: 1   MSQGMLDFAEPDVSPQILMPTATAAELGGALRLALSRSRNVSVPEFQEILKSGIVQKNAK 60
           MSQGML +AEP VSP  L P    A LG ALR AL++S+ V V +FQEI  SGIVQK AK
Sbjct: 22  MSQGMLSYAEPSVSPCYLPPEVDDASLGKALREALAKSQRVEVEKFQEIFHSGIVQKIAK 81

Query: 61  ERQALLMQQYGYKNRKAMMRKMACCWITANSGNIEIKPTHHKNIDGYSGISNDGPEILYV 120
           ER AL+M+ YGYK ++AM +KM  C +      IE++P H K++DGY+   + GP  L+V
Sbjct: 82  ERDALVMKSYGYKTKRAMFQKMDSCSVAVFDDQIEVQPLHQKSLDGYAARKDTGPFPLHV 141

Query: 121 DTNSSDTELGAALMEGFARCTSAV 144
              ++D ELGAAL EGF RCTSA+
Sbjct: 142 PATATDAELGAALREGFKRCTSAI 165


>emb|CBJ40750.1| hypothethical protein [Ralstonia solanacearum CMR15]
          Length = 166

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/144 (52%), Positives = 101/144 (70%)

Query: 1   MSQGMLDFAEPDVSPQILMPTATAAELGGALRLALSRSRNVSVPEFQEILKSGIVQKNAK 60
           MS+GM+ +AEP   P  L P      LG ALR AL++S  VSV +FQEI +SG+VQK  K
Sbjct: 22  MSRGMMSYAEPGAEPSYLDPHVDDDLLGRALREALAKSCQVSVEDFQEIFQSGVVQKLGK 81

Query: 61  ERQALLMQQYGYKNRKAMMRKMACCWITANSGNIEIKPTHHKNIDGYSGISNDGPEILYV 120
           ER+AL M++YGYK R+AM++KM  C ++     IEI+PTH K++DG++   ++GP  LYV
Sbjct: 82  EREALAMEKYGYKTRRAMLKKMDTCSVSVVDNQIEIQPTHQKSLDGWTVTKDEGPFPLYV 141

Query: 121 DTNSSDTELGAALMEGFARCTSAV 144
              ++D ELGAAL EGF RCTSA+
Sbjct: 142 PGTATDIELGAALREGFKRCTSAI 165


>emb|CBJ40752.1| hypothethical protein [Ralstonia solanacearum CMR15]
          Length = 166

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 90/143 (62%)

Query: 2   SQGMLDFAEPDVSPQILMPTATAAELGGALRLALSRSRNVSVPEFQEILKSGIVQKNAKE 61
           S GM+ + EP   P  L P    A LG ALR AL+ S++VSV EFQ I  SG+++    E
Sbjct: 23  SVGMMAYPEPSAPPHYLSPDVDDAALGNALRSALASSKHVSVEEFQGIWNSGVIENIESE 82

Query: 62  RQALLMQQYGYKNRKAMMRKMACCWITANSGNIEIKPTHHKNIDGYSGISNDGPEILYVD 121
           R   + +QYGYK ++AM + M  C ++     ++I+PTH K +DGY+   ++GP  LYV 
Sbjct: 83  RDDWIKKQYGYKTKRAMYKNMDTCNVSGIDDQVKIQPTHQKTLDGYTVRKDEGPFPLYVP 142

Query: 122 TNSSDTELGAALMEGFARCTSAV 144
             ++D ELGAAL EGF RCTSA+
Sbjct: 143 GAATDAELGAALREGFKRCTSAI 165