BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1762.p         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum sero...   319   9e-86
ref|YP_004754753.1| peptide deformylase [Collimonas fungivorans ...   285   2e-75
ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium s...   269   9e-71
ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacteri...   265   2e-69
ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicox...   263   6e-69

>ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
 gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  319 bits (818), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 165/172 (95%), Positives = 171/172 (99%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           MALLNILRYPDPRLHK+A PVTVFDERIKKLVADMAETMYAAPGVGLAA+QVDVHEQVVV
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           IDVSD+GKNLQVFINPEI+WASE+KRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF
Sbjct: 61  IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKKKAG 172
           EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE+KKKAG
Sbjct: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKKKAG 172


>ref|YP_004754753.1| peptide deformylase [Collimonas fungivorans Ter331]
 gb|AEK63930.1| Peptide deformylase [Collimonas fungivorans Ter331]
          Length = 176

 Score =  285 bits (728), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 142/169 (84%), Positives = 156/169 (92%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           M+LLNILRYPD RLHK+A PVTVFD R+KKL+ADMAETMY APGVGLAASQVDVHEQ+VV
Sbjct: 1   MSLLNILRYPDVRLHKIAKPVTVFDTRLKKLIADMAETMYEAPGVGLAASQVDVHEQLVV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           ID SD G +L+VFINPEILWASEEK++YDEGCLSVPG+YDGVERPAR+KVRA DADGK F
Sbjct: 61  IDTSDTGTDLRVFINPEILWASEEKQIYDEGCLSVPGVYDGVERPARIKVRALDADGKPF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKK 169
           EVDAD LLAVCIQHEMDHL GKVFVEYLSPLKRNRIK K+ KEERE+K+
Sbjct: 121 EVDADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKAKMLKEERELKR 169


>ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
 gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
          Length = 178

 Score =  269 bits (688), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 136/169 (80%), Positives = 152/169 (89%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           M++LNILRYPDPRLHKVA PV+VFDERIK LVADMAETMY APGVGLAASQVDVHEQV+V
Sbjct: 1   MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           ID S+    L+ +INPEI+WAS E +VYDEGCLSVPG+YDGVER A+VKVRAFDADGK F
Sbjct: 61  IDTSETHTELRAYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGKQF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKK 169
           E++AD LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIK K+ KEERE+ +
Sbjct: 121 ELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERELAR 169


>ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 177

 Score =  265 bits (677), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 129/169 (76%), Positives = 148/169 (87%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           M LLNILRYPDPRLHK+A PVTVFD+R+K+LVADMAETMY APGVGLA+SQVDVHEQ+++
Sbjct: 1   MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           +D+SD    L+V INPEI WAS E ++YDEGCLSVPG+YDGVER AR+KVRA D DGK F
Sbjct: 61  VDISDNQSELRVLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGKEF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKK 169
           +  AD LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIK K+ KEERE+ +
Sbjct: 121 DTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERELNR 169


>ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans]
 emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans]
          Length = 176

 Score =  263 bits (673), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 129/169 (76%), Positives = 149/169 (88%)

Query: 1   MALLNILRYPDPRLHKVAVPVTVFDERIKKLVADMAETMYAAPGVGLAASQVDVHEQVVV 60
           M++LNILRYPD RLHK+A PVT FD RIK LVADMAETMY APGVGLAASQVDVHEQV+V
Sbjct: 1   MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDVSDEGKNLQVFINPEILWASEEKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           ID S+    L+ +INPE++W S E ++YDEGCLSVPG+YDGVER A+VKVRA+DADGK F
Sbjct: 61  IDTSETRTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGKQF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREMKK 169
           E++A+ LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTK+ KEERE+ +
Sbjct: 121 ELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLKEERELNR 169