BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1761.p (446 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778053.1| SMF protein involved in DNA uptake protein [... 417 e-114 ref|YP_001098481.1| putative nucleotide-binding protein involved... 384 e-104 ref|YP_004754751.1| Rossmann fold nucleotide-binding protein Smf... 362 9e-98 ref|ZP_00945653.1| Smf protein [Ralstonia solanacearum UW551] >g... 356 6e-96 gb|AEG70581.1| smf protein (predicted rossmann fold nucleotide-b... 355 7e-96 >ref|YP_003778053.1| SMF protein involved in DNA uptake protein [Herbaspirillum seropedicae SmR1] gb|ADJ66145.1| SMF protein involved in DNA uptake protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 258/364 (70%), Positives = 298/364 (81%), Gaps = 5/364 (1%) Query: 82 AAWLRLAMTDGIGPVLARRLLAVFGLPQGIWQADQEALRAVVPAPVAARLVCAPTAQQRE 141 A WLRL++ +G+GP ARRLLA FGLP +WQAD AL AVV +AARL+ APT R Sbjct: 19 AWWLRLSLAEGVGPATARRLLAAFGLPGQLWQADASALAAVVSPALAARLLRAPTPAVRA 78 Query: 142 RIAATLAWAQMPGQSVITLADASYPPGLLQIADPPLLLYVRGNPALLAGNALAVVGSRNA 201 +IAATLAW Q PG +++TLAD+ YPP LL IADPPLLLY+RG+PA L A+AVVGSRNA Sbjct: 79 QIAATLAWLQQPGHAILTLADSRYPPALLDIADPPLLLYLRGDPAWLGAEAVAVVGSRNA 138 Query: 202 TAQGVQHAGRFSEELSRGGITIVSGLALGIDAAAHAGGLVGPGSTVAVIGTGIDLDYPQR 261 TAQG+ HA RFS ELSR G++IVSGLALGIDAAAH GGL GPGSTVAVIGTGID+ YP+R Sbjct: 139 TAQGIAHASRFSRELSRAGLSIVSGLALGIDAAAHEGGLDGPGSTVAVIGTGIDIVYPRR 198 Query: 262 NRALAQRIAEGGCIVSEYALGTPPLAANFPRRNRLISGLSRAVLVVEAAARSGSLITARM 321 + ALA RIA GCIVSEY LGTPPLA+NFPRRNRLISGL+RAVLVVEAAA+SGSLITARM Sbjct: 199 HEALAARIAAAGCIVSEYPLGTPPLASNFPRRNRLISGLARAVLVVEAAAQSGSLITARM 258 Query: 322 AAEQGRDVFAIPGSIHAPLSKGCHQLIRQGAKLVETTQDILDELPGWSTLPKQQAVVRAT 381 AAEQGRDVFAIPGSIHAPL+KGCHQLIRQGAKLVETTQD+LDELP +Q V Sbjct: 259 AAEQGRDVFAIPGSIHAPLAKGCHQLIRQGAKLVETTQDMLDELPS-----RQAVRVAHP 313 Query: 382 SSRTKDELDAASQQLLQSLGHDPVDADTLALRCGLDAAGLAGSLLTLELQGWVELLPGSR 441 S +++ + DA + ++Q++ HDPVD DTLA RCGL+AA LAG LLTLEL G +ELLPG+ Sbjct: 314 SPQSQVDDDAMTSLVMQAMAHDPVDIDTLAARCGLEAAVLAGLLLTLELAGRIELLPGAL 373 Query: 442 YRRI 445 YRR+ Sbjct: 374 YRRL 377 >ref|YP_001098481.1| putative nucleotide-binding protein involved in DNA uptake (Smf protein) [Herminiimonas arsenicoxydans] emb|CAL60352.1| putative DNA protecting protein DprA [Herminiimonas arsenicoxydans] Length = 372 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 226/372 (60%), Positives = 272/372 (73%), Gaps = 12/372 (3%) Query: 80 ELAAWLRLAMTDGIGPVLARRLLAVFGLPQGIWQADQEALRAVVPAPVAARLVCAPTAQQ 139 +LA+WLRL T G+GP AR+LL FGLP+ I+ A+ AL+ VVP +A L+ P Sbjct: 6 DLASWLRLEQTPGVGPDTARKLLGAFGLPENIFAANFIALQQVVPERIAHALLAPPAENV 65 Query: 140 RERIAATLAWAQMPGQSVITLADASYPPGLLQIADPPLLLYVRGNPALLAGNALAVVGSR 199 R I AT WA G V+TLADA YPP LL+I DPP+LLY +G LL+ +LAVVGSR Sbjct: 66 RALIEATHKWAAQAGNHVLTLADADYPPALLKIPDPPILLYAKGRLNLLSRPSLAVVGSR 125 Query: 200 NATAQGVQHAGRFSEELSRGGITIVSGLALGIDAAAHAGGLVGP------GSTVAVIGTG 253 NAT QG+ +A +FSE LS G++IVSG+ALGID AAH GGL+ GST+AVIGTG Sbjct: 126 NATTQGIVNAEKFSEALSLAGLSIVSGMALGIDTAAHRGGLLAARQAPHAGSTIAVIGTG 185 Query: 254 IDLDYPQRNRALAQRIAEGGCIVSEYALGTPPLAANFPRRNRLISGLSRAVLVVEAAARS 313 D+ YP RNRALA +IAE GCI+SEY LG P +A+NFPRRNR+ISGL+R VLVVEAA +S Sbjct: 186 ADIVYPARNRALAHQIAEAGCILSEYPLGMPAIASNFPRRNRIISGLARGVLVVEAALQS 245 Query: 314 GSLITARMAAEQGRDVFAIPGSIHAPLSKGCHQLIRQGAKLVETTQDILDELPGWSTLPK 373 GSLITARMAAEQGRD+FAIPGSIH+PLSKGCH LI+QGAKLVET QDIL+EL LP Sbjct: 246 GSLITARMAAEQGRDMFAIPGSIHSPLSKGCHLLIKQGAKLVETAQDILEELQ--YALPA 303 Query: 374 QQAVVRATSSRTKDELDAASQQLLQSLGHDPVDADTLALRCGLDAAGLAGSLLTLELQGW 433 A ++ + LDA +QQ+LQ+LG DPVDADTLA RC LD A L LL LEL Sbjct: 304 ANAASKSVAP----ALDAQAQQILQALGFDPVDADTLAARCQLDMATLHAQLLMLELSNQ 359 Query: 434 VELLPGSRYRRI 445 +E+LPG+ YRR+ Sbjct: 360 LEILPGALYRRL 371 >ref|YP_004754751.1| Rossmann fold nucleotide-binding protein Smf [Collimonas fungivorans Ter331] gb|AEK63928.1| Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake [Collimonas fungivorans Ter331] Length = 405 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 226/374 (60%), Positives = 264/374 (70%), Gaps = 8/374 (2%) Query: 78 ATELAAWLRLAMTDGIGPVLARRLLAVFGLPQGIWQADQEALRAVVPAPVAARLVCAPTA 137 A ELAAWLRL T G+G ARRLL FGLP I+ AL VVP +A L+ AP+ Sbjct: 33 ADELAAWLRLEQTAGVGAETARRLLVAFGLPANIFSCSFSALHKVVPERIAYALLAAPSD 92 Query: 138 QQRERIAATLAWAQMPGQSVITLADASYPPGLLQIADPPLLLYVRGNPALLAGNALAVVG 197 + I T W Q PG + TLAD++YP LL I+DPPL+LYV+G LL A+AVVG Sbjct: 93 AVQALIERTQEWLQQPGNRLFTLADSAYPQALLDISDPPLMLYVKGRAELLERPAMAVVG 152 Query: 198 SRNATAQGVQHAGRFSEELSRGGITIVSGLALGIDAAAHAGGLVGP------GSTVAVIG 251 SRNAT QGV +A RF+E LS+ G+T++SG+ALGIDAAAH G L G GSTVAVIG Sbjct: 153 SRNATVQGVANADRFAEILSQRGLTVISGMALGIDAAAHQGALRGAAGNPEGGSTVAVIG 212 Query: 252 TGIDLDYPQRNRALAQRIAEGGCIVSEYALGTPPLAANFPRRNRLISGLSRAVLVVEAAA 311 TG D+ YP RNR LA +IAE GCIVSEY LG P +AANFPRRNR+ISGL+R VLVVEAAA Sbjct: 213 TGADIVYPARNRGLAHQIAEAGCIVSEYPLGMPGVAANFPRRNRIISGLARGVLVVEAAA 272 Query: 312 RSGSLITARMAAEQGRDVFAIPGSIHAPLSKGCHQLIRQGAKLVETTQDILDELPGWSTL 371 +SGSLITARMAAEQGRDVFAIPGSIH+PLSKGCHQLI+QGAKLVE+ QDIL+EL S Sbjct: 273 QSGSLITARMAAEQGRDVFAIPGSIHSPLSKGCHQLIKQGAKLVESAQDILEELG--SLQ 330 Query: 372 PKQQAVVRATSSRTKDELDAASQQLLQSLGHDPVDADTLALRCGLDAAGLAGSLLTLELQ 431 + + + D+ Q+LL LG+DPV D LA R G DAA L G LL LEL Sbjct: 331 AAVATPAQPAAMPSAAPADSGGQELLAILGYDPVGFDVLAARSGSDAASLGGRLLELELA 390 Query: 432 GWVELLPGSRYRRI 445 G +E LPG+ YRRI Sbjct: 391 GLIEALPGAIYRRI 404 >ref|ZP_00945653.1| Smf protein [Ralstonia solanacearum UW551] ref|YP_002258339.1| smf protein (predicted rossmann fold nucleotide-binding protein involved in dna uptake) [Ralstonia solanacearum IPO1609] gb|EAP71839.1| Smf protein [Ralstonia solanacearum UW551] emb|CAQ60260.1| smf protein (predicted rossmann fold nucleotide-binding protein involved in dna uptake) [Ralstonia solanacearum IPO1609] Length = 403 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 223/385 (57%), Positives = 263/385 (68%), Gaps = 13/385 (3%) Query: 72 DTIADPATELAAWLRLAMTDGIGPVLARRLLAVFGLPQGIWQADQEALRAVVPAPVAARL 131 D DPA ELAAWLRL T GIGPV AR+LLA FGLPQ I++ AL +P A L Sbjct: 20 DATRDPA-ELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALVKTLPERQARAL 78 Query: 132 VCAPTAQQRERIAATLAWAQMPGQSVITLADASYPPGLLQIADPPLLLYVRGNPALLAGN 191 + P I TLAW+ PG + TLAD YPP LL++ DPP LLY +G+ +LL Sbjct: 79 LAEPDEALATLIERTLAWSAEPGNIIFTLADRGYPPRLLELPDPPTLLYAKGDVSLLRAA 138 Query: 192 ALAVVGSRNATAQGVQHAGRFSEELSRGGITIVSGLALGIDAAAHAGGLVGPGSTVAVIG 251 A+ VVG+RNATAQG+++A F++ LS +T+VSGLALGIDAAAH G L GPGST+AV+G Sbjct: 139 AVGVVGARNATAQGLENARAFAQALSAANVTVVSGLALGIDAAAHEGALTGPGSTIAVVG 198 Query: 252 TGIDLDYPQRNRALAQRIAEGGCIVSEYALGTPPLAANFPRRNRLISGLSRAVLVVEAAA 311 TG+D+ YP RNRALA RIAE G IVSEY LG A NFPRRNRLI+GL+R +LVVEAAA Sbjct: 199 TGLDMVYPARNRALAHRIAETGLIVSEYPLGMGARAENFPRRNRLIAGLARGLLVVEAAA 258 Query: 312 RSGSLITARMAAEQGRDVFAIPGSIHAPLSKGCHQLIRQGAKLVETTQDILDELPGWSTL 371 +SGSLITAR+AAEQGRDVFAIPGSIH+PL+KGCH LI+QGAKLVET DILDEL GWS Sbjct: 259 QSGSLITARLAAEQGRDVFAIPGSIHSPLAKGCHLLIKQGAKLVETAADILDEL-GWSRA 317 Query: 372 PK-----------QQAVVRATSSRTKDELDAASQQLLQSLGHDPVDADTLALRCGLDAAG 420 P A A + A LL +LG DPVD DTL R G AA Sbjct: 318 PAPATRASRATAPAPAPASAPPQAARPAATAEETALLDALGFDPVDLDTLCQRTGQTAAP 377 Query: 421 LAGSLLTLELQGWVELLPGSRYRRI 445 L+ LLTLEL+G +E PG R+ R+ Sbjct: 378 LSAQLLTLELEGRIERQPGGRFLRL 402 >gb|AEG70581.1| smf protein (predicted rossmann fold nucleotide-binding protein involved in dna uptake) [Ralstonia solanacearum Po82] Length = 403 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 222/385 (57%), Positives = 264/385 (68%), Gaps = 13/385 (3%) Query: 72 DTIADPATELAAWLRLAMTDGIGPVLARRLLAVFGLPQGIWQADQEALRAVVPAPVAARL 131 D DPA ELAAWLRL T GIGPV AR+LLA FGLPQ I++ AL +P A L Sbjct: 20 DATRDPA-ELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALVKTLPERQARAL 78 Query: 132 VCAPTAQQRERIAATLAWAQMPGQSVITLADASYPPGLLQIADPPLLLYVRGNPALLAGN 191 + P I T+AW+ PG + TLAD YPP LL++ DPP LLY +G+ +LL Sbjct: 79 LAEPDEALATLIERTVAWSAEPGNVIFTLADRGYPPRLLELPDPPTLLYAKGDVSLLRAA 138 Query: 192 ALAVVGSRNATAQGVQHAGRFSEELSRGGITIVSGLALGIDAAAHAGGLVGPGSTVAVIG 251 A+ VVG+RNATAQG+++A F++ LS +T+VSGLALGIDAAAH G L GPGST+AV+G Sbjct: 139 AVGVVGARNATAQGLENARAFAQALSAANVTVVSGLALGIDAAAHEGALTGPGSTIAVVG 198 Query: 252 TGIDLDYPQRNRALAQRIAEGGCIVSEYALGTPPLAANFPRRNRLISGLSRAVLVVEAAA 311 TG+D+ YP RNRALA RIAE G IVSEY LG A NFPRRNRLI+GL+R +LVVEAAA Sbjct: 199 TGLDMVYPARNRALAHRIAETGLIVSEYPLGMGARAENFPRRNRLIAGLARGLLVVEAAA 258 Query: 312 RSGSLITARMAAEQGRDVFAIPGSIHAPLSKGCHQLIRQGAKLVETTQDILDELPGWSTL 371 +SGSLITAR+AAEQGRDVFAIPGSIH+PL+KGCH LI+QGAKLVET DILDEL GWS Sbjct: 259 QSGSLITARLAAEQGRDVFAIPGSIHSPLAKGCHLLIKQGAKLVETAADILDEL-GWSRA 317 Query: 372 P-----------KQQAVVRATSSRTKDELDAASQQLLQSLGHDPVDADTLALRCGLDAAG 420 P + A A + A LL +LG DPVD DTL R G AA Sbjct: 318 PVPATRASRATARAPAPASAPPQAARPAATAEETALLDALGFDPVDLDTLCQRTGQTAAP 377 Query: 421 LAGSLLTLELQGWVELLPGSRYRRI 445 L+ LLTLEL+G +E PG R+ R+ Sbjct: 378 LSAQLLTLELEGRIERQPGGRFLRL 402