BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1756.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778050.1| exodeoxyribonuclease III protein [Herbaspiri... 530 e-149 ref|YP_004754772.1| exodeoxyribonuclease III [Collimonas fungivo... 429 e-118 ref|YP_001098525.1| putative nuclease [Herminiimonas arsenicoxyd... 413 e-113 ref|YP_001351880.1| exodeoxyribonuclease III [Janthinobacterium ... 412 e-113 ref|ZP_08275356.1| Exodeoxyribonuclease III [Oxalobacteraceae ba... 401 e-110 >ref|YP_003778050.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1] gb|ADJ66142.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 257/258 (99%), Positives = 257/258 (99%) Query: 1 MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEDFLAPAGYVGHFHY 60 MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTE FLAPAGYVGHFHY Sbjct: 1 MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEQFLAPAGYVGHFHY 60 Query: 61 AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120 AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ Sbjct: 61 AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120 Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT Sbjct: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180 Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI Sbjct: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240 Query: 241 YKEQRFSDHAPLTVVYSD 258 YKEQRFSDHAPLTVVYSD Sbjct: 241 YKEQRFSDHAPLTVVYSD 258 >ref|YP_004754772.1| exodeoxyribonuclease III [Collimonas fungivorans Ter331] gb|AEK63949.1| Exodeoxyribonuclease III [Collimonas fungivorans Ter331] Length = 255 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 199/257 (77%), Positives = 232/257 (90%), Gaps = 2/257 (0%) Query: 1 MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEDFLAPAGYVGHFHY 60 MP+I+SANLNGIRSAA+KGFFEW+ K++ DF+CVQELKAQAADMT +FLAP GY GHFHY Sbjct: 1 MPRIISANLNGIRSAARKGFFEWMAKQSADFICVQELKAQAADMTPEFLAPEGYTGHFHY 60 Query: 61 AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120 A+KKGYSGVG+YS+R+P++VRIGFGN EFD EGRYVECD+GDLTVISLY PSGSSSEERQ Sbjct: 61 AEKKGYSGVGLYSKRKPNAVRIGFGNPEFDAEGRYVECDFGDLTVISLYCPSGSSSEERQ 120 Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180 AKFRFMEAFLPHL +L +SGREVVICGDWNIAH+E DLKNWK N+KNSGFLPEERAW+T Sbjct: 121 IAKFRFMEAFLPHLQQLRESGREVVICGDWNIAHQERDLKNWKGNKKNSGFLPEERAWLT 180 Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240 +F+Q+GLVDV+R++ + E YTWWSNRGQAWA NVGWRIDYH+STPGIAA A + AI Sbjct: 181 HLFEQVGLVDVFRQV--DQREEQYTWWSNRGQAWAKNVGWRIDYHISTPGIAANAHAVAI 238 Query: 241 YKEQRFSDHAPLTVVYS 257 YK++RFSDHAPLT+ Y+ Sbjct: 239 YKDERFSDHAPLTIDYT 255 >ref|YP_001098525.1| putative nuclease [Herminiimonas arsenicoxydans] emb|CAL60396.1| Putative Nuclease [Herminiimonas arsenicoxydans] Length = 259 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 187/257 (72%), Positives = 222/257 (86%) Query: 1 MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEDFLAPAGYVGHFHY 60 M KIVSANLNGIRSAAKKGFF+W+ + + D++CVQELKAQ ADMT DFL P GY G+FHY Sbjct: 1 MLKIVSANLNGIRSAAKKGFFQWMARHSADYICVQELKAQEADMTPDFLTPEGYFGYFHY 60 Query: 61 AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120 A+KKGYSG GVY + +PD+V+IGF EFD EGRYV+CD+G+L+VIS+Y PSGSS EERQ Sbjct: 61 AEKKGYSGAGVYCKTKPDNVQIGFNCPEFDAEGRYVQCDFGNLSVISVYCPSGSSGEERQ 120 Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180 +AKFRFM+ FLPHL+EL+ GRE VICGDWNIAH EIDLKN+K N+KNSGFLPEER W+T Sbjct: 121 QAKFRFMDVFLPHLLELKSQGREFVICGDWNIAHNEIDLKNYKGNRKNSGFLPEEREWLT 180 Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240 R+FD++GLVDVYRRLHP TT E YTWWSNRGQA+A NVGWRIDY V+TP +AA+A +A I Sbjct: 181 RVFDEVGLVDVYRRLHPGTTEECYTWWSNRGQAYAKNVGWRIDYQVATPSLAARAHAAEI 240 Query: 241 YKEQRFSDHAPLTVVYS 257 YK +RFSDHAPLT+ Y+ Sbjct: 241 YKVERFSDHAPLTITYT 257 >ref|YP_001351880.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille] gb|ABR88273.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille] Length = 259 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 190/256 (74%), Positives = 219/256 (85%) Query: 1 MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEDFLAPAGYVGHFHY 60 M KIVSANLNGIRSAAKKGFF W+ K DF+CVQELKAQA DMT +FL P GY G+FHY Sbjct: 1 MLKIVSANLNGIRSAAKKGFFTWMAKHDADFICVQELKAQAPDMTPEFLTPPGYTGYFHY 60 Query: 61 AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120 A+KKGYSG GVY + PD V+IGFG +EFD EGRYV+CD+G L+VIS+Y PSGSSSEERQ Sbjct: 61 AEKKGYSGAGVYCKTVPDHVQIGFGCSEFDAEGRYVQCDFGKLSVISVYCPSGSSSEERQ 120 Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180 AKFRFM+ FLPHL+EL+ GR+ VICGDWNIAH EIDLKN+K N+KNSGFLPEERAW++ Sbjct: 121 LAKFRFMDVFLPHLLELKAQGRDFVICGDWNIAHNEIDLKNFKGNRKNSGFLPEERAWLS 180 Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240 R+FD++GLVDVYRRLHP TT E YTWWSNRGQA+A NVGWRIDY V+TP +A A SAAI Sbjct: 181 RVFDEVGLVDVYRRLHPTTTEECYTWWSNRGQAYAKNVGWRIDYQVATPALAETARSAAI 240 Query: 241 YKEQRFSDHAPLTVVY 256 YK++RFSDHAPLT+ Y Sbjct: 241 YKDERFSDHAPLTIDY 256 >ref|ZP_08275356.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480] gb|EGF31174.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480] Length = 256 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 185/256 (72%), Positives = 220/256 (85%), Gaps = 2/256 (0%) Query: 1 MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEDFLAPAGYVGHFHY 60 M KI++ANLNGIRSA+KKGFFEW+ K+ DF+CVQELKAQAADM+ + LAP GY G+FHY Sbjct: 1 MLKIIAANLNGIRSASKKGFFEWMAKQDADFICVQELKAQAADMSPEMLAPEGYHGYFHY 60 Query: 61 AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120 A+KKGYSG GVYS+R PD V GFG EFD EGRYV+CDYG+L+++S+Y PSGSS EERQ Sbjct: 61 AEKKGYSGTGVYSKRVPDQVITGFGTPEFDAEGRYVQCDYGNLSIVSVYCPSGSSGEERQ 120 Query: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180 AKFRFM+ FLPHL L+ SGREVVICGDWNIAH+EIDLKNWK N+KNSGFLPEERAW++ Sbjct: 121 LAKFRFMDVFLPHLAALKASGREVVICGDWNIAHQEIDLKNWKGNKKNSGFLPEERAWLS 180 Query: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240 R+FD++ LVDV+RR+ + E YTWWSNRGQAWANNVGWRIDY ++TPGIAA A + AI Sbjct: 181 RLFDEVALVDVFRRV--DERAEQYTWWSNRGQAWANNVGWRIDYQIATPGIAATAKAVAI 238 Query: 241 YKEQRFSDHAPLTVVY 256 YK++RFSDHAPLT+ Y Sbjct: 239 YKDERFSDHAPLTIEY 254