BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1744.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_145679.1| copper resistance D transmembrane protein [Rals... 247 2e-63 ref|YP_001899292.1| copper resistance D domain-containing protei... 246 2e-63 ref|ZP_07677917.1| copper resistance protein D [Ralstonia sp. 5_... 239 3e-61 ref|YP_001561475.1| copper resistance D domain-containing protei... 238 1e-60 gb|ADN85632.1| CopD [Achromobacter sp. AO22] 237 2e-60 >ref|YP_145679.1| copper resistance D transmembrane protein [Ralstonia metallidurans CH34] ref|YP_581924.1| copper resistance protein CopD [Cupriavidus metallidurans CH34] emb|CAI11328.1| copper resistance D transmembrane protein [Cupriavidus metallidurans CH34] gb|ABF12974.1| copper resistance protein D, transmembrane component, CopD putative canal involved in Cu(II)/Cu(I) uptake [Cupriavidus metallidurans CH34] Length = 305 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 160/305 (52%), Positives = 209/305 (68%), Gaps = 2/305 (0%) Query: 1 MDGMTVLVRFALYLDLMLVFGLPLFQLHALRWPERSSPLGKKFVLLTASAAAIGLVLSAV 60 MD TV VRFALYLDL +FGLPLF L+ALR ER SP+G F L AA +G+VLS V Sbjct: 1 MDWATVAVRFALYLDLAALFGLPLFALYALRQEERRSPIGASFATLCKVAATLGIVLSFV 60 Query: 61 SMLLMAKAMTGAADIGSIEQHMFEMMLTDTSFGIAWCLRMGMLLVVIMAALLSNVWPTVS 120 ++ +MAK MTGAA ++ H+FEM++T T+FG AW +R+ L + ++AAL P Sbjct: 61 NIAVMAKGMTGAASYTELQGHVFEMIVTGTAFGTAWIVRVVALFLCLLAALFLRNRPLSQ 120 Query: 121 AVLMSAAGATALATLSWAGHGAMDEGVRGQVHLIADIIHLLAAGGWIGALAAFILMLVLR 180 ++ A ALATL+W GHGAMD+GV+G +HL +DI HL+AAG W GAL AF+++ R Sbjct: 121 FSAITGGAAFALATLAWGGHGAMDDGVKGYIHLASDIAHLIAAGAWFGALIAFVVL--SR 178 Query: 181 YGNDPADVSLLSRTLNGFALMGTLIVGSLVITGALNYWLIVGPTVTGLFSSPYGQLLIAK 240 P V+LLSRT NGFA +GT++V +LV+TG +NYW+I+G + L + YG LL+ K Sbjct: 179 TAATPNKVALLSRTSNGFAQVGTMVVATLVVTGVVNYWMIIGLQLPELSLASYGGLLLFK 238 Query: 241 LGLFGLMLALAAANRYRLSPLLERVHVSGEHATAIAALRRSLFVETCCAFLILALVAWLG 300 L LFG+ML LAAANR+ LSP LE +G+H A+ L+RSL +ET A LIL LVA LG Sbjct: 239 LALFGIMLLLAAANRFHLSPQLEHAVRTGDHVVAVRTLQRSLTIETGAATLILILVASLG 298 Query: 301 TLGPM 305 L PM Sbjct: 299 ILSPM 303 >ref|YP_001899292.1| copper resistance D domain-containing protein [Ralstonia pickettii 12J] ref|YP_002973807.1| copper resistance D domain protein [Ralstonia pickettii 12D] ref|ZP_07677869.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] gb|ACD26860.1| copper resistance D domain protein [Ralstonia pickettii 12J] gb|ACS66563.1| copper resistance D domain protein [Ralstonia pickettii 12D] gb|EFP63712.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] Length = 309 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 154/303 (50%), Positives = 203/303 (66%) Query: 2 DGMTVLVRFALYLDLMLVFGLPLFQLHALRWPERSSPLGKKFVLLTASAAAIGLVLSAVS 61 D + + +RF LYLDL ++FG+ LF + ALR R++ + +++V AA+G+VLS S Sbjct: 4 DWLNIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWS 63 Query: 62 MLLMAKAMTGAADIGSIEQHMFEMMLTDTSFGIAWCLRMGMLLVVIMAALLSNVWPTVSA 121 ++MAKAMTGA + + H+F MMLT T+ G+AW R+ L ++A P Sbjct: 64 FVVMAKAMTGATEYAELTSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHF 123 Query: 122 VLMSAAGATALATLSWAGHGAMDEGVRGQVHLIADIIHLLAAGGWIGALAAFILMLVLRY 181 + + GA AL T++WAGHGAMD+GV+G +HL DI H+LAAG W+GALAAF+L+ R Sbjct: 124 GVCAGLGAVALLTVTWAGHGAMDDGVKGYLHLTFDIAHVLAAGAWVGALAAFVLLASTRQ 183 Query: 182 GNDPADVSLLSRTLNGFALMGTLIVGSLVITGALNYWLIVGPTVTGLFSSPYGQLLIAKL 241 V +LS T NGFA +GTLIV +L TG NY+LIVGPT+ GLF++PYG+LL+ KL Sbjct: 184 AASSETVEILSHTSNGFARLGTLIVATLFATGTFNYFLIVGPTINGLFTTPYGRLLLIKL 243 Query: 242 GLFGLMLALAAANRYRLSPLLERVHVSGEHATAIAALRRSLFVETCCAFLILALVAWLGT 301 LF LML LAAANRYRLSP L + +H A+ ALRRSL +ET A LILALVAWLG Sbjct: 244 ALFALMLGLAAANRYRLSPRLAAAVRAADHVHAVIALRRSLVMETSLAILILALVAWLGV 303 Query: 302 LGP 304 L P Sbjct: 304 LSP 306 >ref|ZP_07677917.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] gb|EFP63760.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] Length = 309 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 154/303 (50%), Positives = 208/303 (68%) Query: 2 DGMTVLVRFALYLDLMLVFGLPLFQLHALRWPERSSPLGKKFVLLTASAAAIGLVLSAVS 61 D + + +RFALYLDL ++FG+ LF + ALR R+S + +++V + AA+G++LS S Sbjct: 4 DWLNIALRFALYLDLTILFGVSLFGVQALRPDHRASAIARRYVCTVGTTAALGILLSLWS 63 Query: 62 MLLMAKAMTGAADIGSIEQHMFEMMLTDTSFGIAWCLRMGMLLVVIMAALLSNVWPTVSA 121 +++MAKAMTGA + G++ H+F M+LT T+ G+AW R+ L+ ++ P Sbjct: 64 IVVMAKAMTGATEYGALTSHIFGMILTTTTVGLAWIARLVALVSCLVVVAWLAKRPIPHF 123 Query: 122 VLMSAAGATALATLSWAGHGAMDEGVRGQVHLIADIIHLLAAGGWIGALAAFILMLVLRY 181 L + GA AL T++WAGHGAM +G G +HL +DI H+LAAG W+GALAAF+L+ +R+ Sbjct: 124 GLCAGLGAVALVTVTWAGHGAMHDGATGYLHLASDIAHVLAAGAWVGALAAFVLLASMRH 183 Query: 182 GNDPADVSLLSRTLNGFALMGTLIVGSLVITGALNYWLIVGPTVTGLFSSPYGQLLIAKL 241 V +LS T NGFA +GTLIV +L+ TG NYWLIVGPT+ GLFSS YG+LL+ KL Sbjct: 184 AASTEAVEILSHTSNGFARLGTLIVATLLATGVFNYWLIVGPTLDGLFSSLYGRLLLLKL 243 Query: 242 GLFGLMLALAAANRYRLSPLLERVHVSGEHATAIAALRRSLFVETCCAFLILALVAWLGT 301 LFG ML LAAANRYRLSP LE G+H+ A+ ALRRSL +E A +ILA VAWLG Sbjct: 244 ALFGAMLGLAAANRYRLSPQLETALDVGDHSDAVIALRRSLCMEAGLAVVILAAVAWLGV 303 Query: 302 LGP 304 L P Sbjct: 304 LSP 306 >ref|YP_001561475.1| copper resistance D domain-containing protein [Delftia acidovorans SPH-1] ref|ZP_08506047.1| Putative copper resistance D transmembrane protein, CopD [Methyloversatilis universalis FAM5] gb|ABX33090.1| copper resistance D domain protein [Delftia acidovorans SPH-1] gb|EGK70625.1| Putative copper resistance D transmembrane protein, CopD [Methyloversatilis universalis FAM5] Length = 308 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 213/303 (70%), Gaps = 1/303 (0%) Query: 2 DGMTVLVRFALYLDLMLVFGLPLFQLHALRWPERSSPLGKKFVLLTASAAAIGLVLSAVS 61 D +T+++R ALYLDL FG+ +F L+AL ERSS + +++ +L ++AAIG+VLS Sbjct: 4 DWLTIVLRLALYLDLAAAFGVAMFGLYALGNDERSSTISRRYRVLIGASAAIGIVLSMWG 63 Query: 62 MLLMAKAMTGAADIGSIEQHMFEMMLTDTSFGIAWCLRMGMLLVVIMAALLSNVWPTVSA 121 M +MAKAM+GA + H+F+M++T T GIAWC+R+ L+ ++ A+L + T+ Sbjct: 64 MTVMAKAMSGAQSYAELSTHVFDMLITGTHMGIAWCIRILALVTCVLIAVL-RMNSTLRF 122 Query: 122 VLMSAAGATALATLSWAGHGAMDEGVRGQVHLIADIIHLLAAGGWIGALAAFILMLVLRY 181 M+A+ ALATL+WAGHGAMD+GVRG +HL +DI HL AAG W+GAL AF+++ + Sbjct: 123 AAMAASSGVALATLAWAGHGAMDDGVRGYIHLASDITHLWAAGAWVGALIAFLVLAANKP 182 Query: 182 GNDPADVSLLSRTLNGFALMGTLIVGSLVITGALNYWLIVGPTVTGLFSSPYGQLLIAKL 241 V +LSRT NGFA +GT+IV +LV+TGALNY LI GP++ LFS+ YG+LL+ KL Sbjct: 183 NTGQGSVEILSRTSNGFARIGTVIVAALVVTGALNYLLIAGPSLDPLFSTLYGRLLVGKL 242 Query: 242 GLFGLMLALAAANRYRLSPLLERVHVSGEHATAIAALRRSLFVETCCAFLILALVAWLGT 301 LFG MLALAAANR+RLSP LE +G HA A+ LR+SLF E A L+LA VAWLG Sbjct: 243 LLFGGMLALAAANRFRLSPSLEAALRTGNHAHAVVKLRQSLFTEATLAVLVLASVAWLGI 302 Query: 302 LGP 304 L P Sbjct: 303 LSP 305 >gb|ADN85632.1| CopD [Achromobacter sp. AO22] Length = 308 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 157/303 (51%), Positives = 212/303 (69%), Gaps = 1/303 (0%) Query: 2 DGMTVLVRFALYLDLMLVFGLPLFQLHALRWPERSSPLGKKFVLLTASAAAIGLVLSAVS 61 D +T+++R ALYLDL FG+ +F L+AL ERSS + +++ +L ++AAIG+VLS Sbjct: 4 DWLTIVLRLALYLDLAAAFGVAMFGLYALGNDERSSTISRRYRVLIGASAAIGIVLSMWG 63 Query: 62 MLLMAKAMTGAADIGSIEQHMFEMMLTDTSFGIAWCLRMGMLLVVIMAALLSNVWPTVSA 121 M +MAKAM+GA + H+F+M++T T GIAWC+R+ L+ ++ A+L + T+ Sbjct: 64 MTVMAKAMSGAQSYAELSTHVFDMLITGTHMGIAWCIRILALVTCVLIAVL-RMNSTLRF 122 Query: 122 VLMSAAGATALATLSWAGHGAMDEGVRGQVHLIADIIHLLAAGGWIGALAAFILMLVLRY 181 M+A+ ALATL+WAGHGAMD+GVRG +HL +DI HL AAG W+GAL AF+++ + Sbjct: 123 AAMAASSGVALATLAWAGHGAMDDGVRGYIHLASDITHLWAAGAWVGALIAFLVLAANKP 182 Query: 182 GNDPADVSLLSRTLNGFALMGTLIVGSLVITGALNYWLIVGPTVTGLFSSPYGQLLIAKL 241 V +LSRT NGFA GT+IV +LV+TGALNY LI GP++ LFS+ YG+LL+ KL Sbjct: 183 NTGQGSVEILSRTSNGFARXGTVIVAALVVTGALNYLLIAGPSLDQLFSTLYGRLLVGKL 242 Query: 242 GLFGLMLALAAANRYRLSPLLERVHVSGEHATAIAALRRSLFVETCCAFLILALVAWLGT 301 LFG MLALAAANR+RLSP LE +G HA A+ LR+SLF E A L+LA VAWLG Sbjct: 243 LLFGGMLALAAANRFRLSPSLEAALRTGNHAHAVVKLRQSLFTEATLAVLVLASVAWLGI 302 Query: 302 LGP 304 L P Sbjct: 303 LSP 305