BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1743.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_581923.1| copper resistance protein CopC [Cupriavidus met...   145   3e-33
ref|YP_145680.1| copper resistance C signal peptide protein [Ral...   143   7e-33
ref|YP_001353415.1| copper resistance signal peptide protein C [...   143   7e-33
ref|YP_001099840.1| copper resistance protein CopC [Herminiimona...   141   3e-32
ref|YP_841695.1| copper resistance protein C [Ralstonia eutropha...   137   4e-31

>ref|YP_581923.1| copper resistance protein CopC [Cupriavidus metallidurans CH34]
 gb|ABF12973.1| CopC Copper resistance protein precursor, ''E set domains''
           superfamily CopC Cu(II) binding protein [Cupriavidus
           metallidurans CH34]
          Length = 132

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/105 (76%), Positives = 89/105 (84%)

Query: 24  FAHPKLLGSTPEDNSTVSAPEKIELHFSENLSKQFSGASLLMTSMPGMNHASPMKMAAKV 83
           FAHPKLL STP D + V+AP+KIEL FSENLS QFSGA+LLMT MPGM   SPMK+AAKV
Sbjct: 28  FAHPKLLTSTPADKAEVAAPQKIELKFSENLSTQFSGANLLMTGMPGMADHSPMKIAAKV 87

Query: 84  SGSDDPKTMVITPSQPLMPGVYSIEWRAVSSDTHPITGKITFTVK 128
           +G DDPKTMV+TP+QPL PG Y +EWRAVSSDTHPI G ITFTVK
Sbjct: 88  AGGDDPKTMVVTPTQPLSPGNYRVEWRAVSSDTHPINGNITFTVK 132


>ref|YP_145680.1| copper resistance C signal peptide protein [Ralstonia metallidurans
           CH34]
 emb|CAI11329.1| copper resistance C signal peptide protein [Cupriavidus
           metallidurans CH34]
          Length = 128

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 80/105 (76%), Positives = 89/105 (84%)

Query: 24  FAHPKLLGSTPEDNSTVSAPEKIELHFSENLSKQFSGASLLMTSMPGMNHASPMKMAAKV 83
           FAHPKLL STP D + V+AP+KIEL FSENLS QFSGA+LLMT MPGM   SPMK+AAKV
Sbjct: 24  FAHPKLLTSTPADKAEVAAPQKIELKFSENLSTQFSGANLLMTGMPGMADHSPMKIAAKV 83

Query: 84  SGSDDPKTMVITPSQPLMPGVYSIEWRAVSSDTHPITGKITFTVK 128
           +G DDPKTMV+TP+QPL PG Y +EWRAVSSDTHPI G ITFTVK
Sbjct: 84  AGGDDPKTMVVTPTQPLSPGNYRVEWRAVSSDTHPINGNITFTVK 128


>ref|YP_001353415.1| copper resistance signal peptide protein C [Janthinobacterium sp.
           Marseille]
 gb|ABR91575.1| copper resistance signal peptide protein C [Janthinobacterium sp.
           Marseille]
          Length = 125

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 78/109 (71%), Positives = 91/109 (83%), Gaps = 3/109 (2%)

Query: 20  ATAAFAHPKLLGSTPEDNSTVSAPEKIELHFSENLSKQFSGASLLMTSMPGMNHASPMKM 79
           AT+AFAHP L+ STP+DNS   AP KIEL FSENL+KQFSGA+L+M  MPGM     MKM
Sbjct: 20  ATSAFAHPSLVESTPKDNSEGPAPAKIELRFSENLTKQFSGANLIMAEMPGM---GAMKM 76

Query: 80  AAKVSGSDDPKTMVITPSQPLMPGVYSIEWRAVSSDTHPITGKITFTVK 128
           AAK+ G+DDPK MV+TP+QPL PG Y++EWRAVS+DTHPITGKITFTVK
Sbjct: 77  AAKIGGTDDPKVMVLTPNQPLTPGKYNVEWRAVSTDTHPITGKITFTVK 125


>ref|YP_001099840.1| copper resistance protein CopC [Herminiimonas arsenicoxydans]
 emb|CAL61713.1| Copper resistance protein C precursor CopC [Herminiimonas
           arsenicoxydans]
          Length = 125

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/120 (65%), Positives = 94/120 (78%), Gaps = 3/120 (2%)

Query: 9   KTAVTIAAAAFATAAFAHPKLLGSTPEDNSTVSAPEKIELHFSENLSKQFSGASLLMTSM 68
           +  V   A   ATAAFAHP L+ STP+DNS   AP KIEL FSE L+KQFSGA+L+M  M
Sbjct: 9   RIGVASLATLIATAAFAHPSLVDSTPKDNSEGPAPAKIELRFSETLTKQFSGANLIMAEM 68

Query: 69  PGMNHASPMKMAAKVSGSDDPKTMVITPSQPLMPGVYSIEWRAVSSDTHPITGKITFTVK 128
           PGM     MK+AAK++G+DDPK MV+TP+QPL PG Y++EWRAVS+DTHPITGKITFTVK
Sbjct: 69  PGM---GAMKIAAKIAGTDDPKVMVLTPNQPLTPGKYNVEWRAVSTDTHPITGKITFTVK 125


>ref|YP_841695.1| copper resistance protein C [Ralstonia eutropha H16]
 emb|CAJ96965.1| copper resistance protein C [Ralstonia eutropha H16]
          Length = 128

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 77/109 (70%), Positives = 91/109 (83%)

Query: 20  ATAAFAHPKLLGSTPEDNSTVSAPEKIELHFSENLSKQFSGASLLMTSMPGMNHASPMKM 79
           ++ AFAHPKL+ STP D + V+AP+KIEL FSE+L  QFSGA+L+MT MPGM   +PMKM
Sbjct: 20  SSIAFAHPKLVSSTPADKAEVAAPQKIELQFSESLVTQFSGANLVMTGMPGMADHAPMKM 79

Query: 80  AAKVSGSDDPKTMVITPSQPLMPGVYSIEWRAVSSDTHPITGKITFTVK 128
           A KVSGSDDPKTMVITP+QPL PG Y ++WRAVSSDTHP+ GKI FTVK
Sbjct: 80  AVKVSGSDDPKTMVITPTQPLPPGSYRVDWRAVSSDTHPVNGKIAFTVK 128