BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1742.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_841696.1| copper resistance protein B, copper extruder [R... 352 3e-95 emb|CBJ40260.1| CopB ATPase, Copper resistance protein B precurs... 352 7e-95 ref|YP_001099841.1| copper resistance protein B [Herminiimonas a... 350 2e-94 ref|NP_522218.1| copper resistance protein B [Ralstonia solanace... 349 3e-94 ref|ZP_07677915.1| copper resistance protein B [Ralstonia sp. 5_... 345 6e-93 >ref|YP_841696.1| copper resistance protein B, copper extruder [Ralstonia eutropha H16] emb|CAJ96966.1| copper resistance protein B, copper extruder [Ralstonia eutropha H16] Length = 341 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 196/343 (57%), Positives = 231/343 (67%), Gaps = 17/343 (4%) Query: 1 MTLTRYSTQILVLTLASASMSAALAQ-AHEGHA----APAASSA---SQPAMTTMDSMDS 52 +++ R+ IL + LA ++ AA AQ H GHA APAA Q D + + Sbjct: 8 ISMHRHKKTILAVALALTAIGAAQAQDPHAGHAHQHDAPAAMQGMDHGQMQGMEQDGIQT 67 Query: 53 MDGSTASPAMPMDHGAMNHAGMNHGGMDMGGMDMGSSSTAPADARDPHGYSNGYTLNTGP 112 MDG A D M M+HG M M G +AP DARDPH YS GY L G Sbjct: 68 MDGGGAPTP---DTQGMAAPAMDHGDMKMQG------GSAPPDARDPHAYSGGYQLGVGK 118 Query: 113 YAQKDTSALMMSDMHSFGSFLVDRLERVHTRSGNSVAYDTQGWVGNSYDKFYLKAEGDIE 172 YA D L+M+D H F S LVDRLE H N+ AY+ Q W GNSYDK LKAEG+ Sbjct: 119 YALGDKRQLVMADEHLFASVLVDRLEWAHANGSNAAAYEAQAWFGNSYDKLVLKAEGEAS 178 Query: 173 QGRVGDARTELLWSHAITPYWDTQLGLRVDVGSNRPGRNWLAFGVQGLAPYWFEVEATGY 232 +G++ +ARTELLW HA+ YWDTQLGLR D GS RP RNWLAFGVQGLAPYWFEV+AT Y Sbjct: 179 KGKLHEARTELLWGHAVASYWDTQLGLRNDTGSGRPARNWLAFGVQGLAPYWFEVDATAY 238 Query: 233 VGEQGRTALRLAAEYEVLLTQRWVLQPRVEANLYGKEDPELGIGRGLSSAAYGVRLRYEF 292 VG GRTALRL+AEYE+LLTQR +LQPR+EANLYGK DPE+GIG GLS+ G+RLRYEF Sbjct: 239 VGTSGRTALRLSAEYELLLTQRLILQPRIEANLYGKNDPEVGIGSGLSNGTVGLRLRYEF 298 Query: 293 TRQFAPYVGIERNQSFGRTASFVRGAGGNAGETRLVAGVRVLF 335 +RQFAPY+G+ER Q+FG TA +R +GG AGETR VAGVRV F Sbjct: 299 SRQFAPYIGVERYQTFGNTADMIRTSGGKAGETRFVAGVRVWF 341 >emb|CBJ40260.1| CopB ATPase, Copper resistance protein B precursor [Ralstonia solanacearum CMR15] Length = 332 Score = 352 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 197/325 (60%), Positives = 227/325 (69%), Gaps = 22/325 (6%) Query: 21 SAALAQAHEGH-AAPAASSASQPAMTTMD---------SMDSMDGSTASPAMPMDHGAMN 70 +AA GH A P ++ AM MD +M MD S AMPMDHGAM Sbjct: 20 AAAQTTPQSGHDAMPGMDHSAHGAMPGMDHGTMPMDHGAMQGMDHS----AMPMDHGAM- 74 Query: 71 HAGMNHGGMDMGGMDMGSSSTAPADARDPHGYSNGYTLNTGPYAQKDTSALMMSDMHSFG 130 GM+HG M+M G +APADARDP YSNGY L TGPYA DT LMM+D H F Sbjct: 75 -PGMDHGSMNMQG------GSAPADARDPDAYSNGYRLGTGPYALGDTRHLMMADEHKFA 127 Query: 131 SFLVDRLERVHTRSGNSVAYDTQGWVGNSYDKFYLKAEGDIEQGRVGDARTELLWSHAIT 190 S LV+RLE H N+ AYD Q W G SYDK +KAEGDI +GR +ARTELLW HAI Sbjct: 128 SVLVERLEWAHGNGTNATAYDAQAWFGTSYDKLVIKAEGDIHKGRAEEARTELLWGHAIA 187 Query: 191 PYWDTQLGLRVDVGSNRPGRNWLAFGVQGLAPYWFEVEATGYVGEQGRTALRLAAEYEVL 250 P+WDTQLGLR D G+ RPGRNW AFGVQGLAPYWF +EAT YVG+ GRTALRL++EYE+L Sbjct: 188 PFWDTQLGLRNDAGTGRPGRNWAAFGVQGLAPYWFHLEATAYVGDSGRTALRLSSEYELL 247 Query: 251 LTQRWVLQPRVEANLYGKEDPELGIGRGLSSAAYGVRLRYEFTRQFAPYVGIERNQSFGR 310 LTQR +LQPR+EA+ YGK DP L IG GLSS G+RLRYEF+RQFAPYVG+ERNQ+FG Sbjct: 248 LTQRLILQPRLEASFYGKRDPALDIGSGLSSGTLGLRLRYEFSRQFAPYVGVERNQAFGG 307 Query: 311 TASFVRGAGGNAGETRLVAGVRVLF 335 TA+ + AGG GETR+VAGVR F Sbjct: 308 TANLIEAAGGRRGETRVVAGVRFWF 332 >ref|YP_001099841.1| copper resistance protein B [Herminiimonas arsenicoxydans] emb|CAL61714.1| Copper resistance protein B precursor [Herminiimonas arsenicoxydans] Length = 326 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 181/325 (55%), Positives = 233/325 (71%), Gaps = 12/325 (3%) Query: 11 LVLTLASASMSAALAQAHEGHAAPAASSASQPAMTTMDSMDSMDGSTASPAMPMDHGAMN 70 +V L+S +++ + ++H GH + SA+ TMD D + + DHG + Sbjct: 14 VVCVLSSTALAQSAQESHSGHGQTSTQSAADAGFGTMD-----DSAVTPASNAADHGNIQ 68 Query: 71 HAGMNHGGMDMGGMDMGSSSTAPADARDPHGYSNGYTLNTGPYAQKDTSALMMSDMHSFG 130 GM G DMGG S+APADARDPH YS GY L TG YA + +LMM+D H F Sbjct: 69 MDGMT-GMSDMGG------SSAPADARDPHAYSGGYELGTGLYAVGEQRSLMMADEHKFA 121 Query: 131 SFLVDRLERVHTRSGNSVAYDTQGWVGNSYDKFYLKAEGDIEQGRVGDARTELLWSHAIT 190 S LVDR ERV++ G+S +Y+ Q W G+SY+K +KAEG+ QGRV DARTELLW+ A Sbjct: 122 SLLVDRFERVYSNGGDSNSYEVQAWYGDSYNKLTVKAEGEFAQGRVQDARTELLWAKAFH 181 Query: 191 PYWDTQLGLRVDVGSNRPGRNWLAFGVQGLAPYWFEVEATGYVGEQGRTALRLAAEYEVL 250 PYWD Q G+R D+ ++ P RNWLAFGVQGLAPYWFEV+AT Y+G +GRTA RL+ EYE++ Sbjct: 182 PYWDVQAGIRNDISADGPSRNWLAFGVQGLAPYWFEVDATAYLGTEGRTAFRLSTEYELM 241 Query: 251 LTQRWVLQPRVEANLYGKEDPELGIGRGLSSAAYGVRLRYEFTRQFAPYVGIERNQSFGR 310 LTQR +LQPR+EAN+YGK+DPE+G+GRGLSSA +GVRLRYEF+RQFAPY+GIE + FGR Sbjct: 242 LTQRLILQPRLEANVYGKDDPEVGVGRGLSSATFGVRLRYEFSRQFAPYIGIEHSARFGR 301 Query: 311 TASFVRGAGGNAGETRLVAGVRVLF 335 TA+ VR AGG+A +T++VAGVR F Sbjct: 302 TATLVRNAGGDAQQTQVVAGVRFWF 326 >ref|NP_522218.1| copper resistance protein B [Ralstonia solanacearum GMI1000] emb|CAD17808.1| probable copper resistance protein b [Ralstonia solanacearum GMI1000] Length = 346 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 193/320 (60%), Positives = 224/320 (70%), Gaps = 15/320 (4%) Query: 23 ALAQAHEGHAAPAASSASQPAMTTMDSMDSMDGSTASP-------AMPMDHGAMNHAGMN 75 A AQ H G A ++A D+M MD S S AMPMDHGAM GM+ Sbjct: 35 AWAQEHPGPDAGQPTAAQAAPQGGHDAMPGMDHSAHSAMPGMDHGAMPMDHGAM--PGMD 92 Query: 76 HGGMDMGGMDMGSSSTAPADARDPHGYSNGYTLNTGPYAQKDTSALMMSDMHSFGSFLVD 135 HG M+M G +AP DARDP YSNGY L GPYA DT LMM+D H F S LV+ Sbjct: 93 HGSMNMQG------GSAPPDARDPDAYSNGYRLGAGPYALGDTRHLMMADEHRFASVLVE 146 Query: 136 RLERVHTRSGNSVAYDTQGWVGNSYDKFYLKAEGDIEQGRVGDARTELLWSHAITPYWDT 195 RLE H N+ AYD Q W G SYDK +KAEGDI +GRV +ARTELLW HAI P+WDT Sbjct: 147 RLEWAHGNGTNATAYDAQAWFGTSYDKLVIKAEGDIHKGRVEEARTELLWGHAIAPFWDT 206 Query: 196 QLGLRVDVGSNRPGRNWLAFGVQGLAPYWFEVEATGYVGEQGRTALRLAAEYEVLLTQRW 255 QLGLR D G+ RPGR+W AFGVQGLAPYWF +EAT YVG+ GRTALRL++EYE+LLTQR Sbjct: 207 QLGLRNDAGTGRPGRSWAAFGVQGLAPYWFHLEATAYVGDSGRTALRLSSEYELLLTQRL 266 Query: 256 VLQPRVEANLYGKEDPELGIGRGLSSAAYGVRLRYEFTRQFAPYVGIERNQSFGRTASFV 315 +LQPR+EA+ YGK DP L IG GLSS G+RLRYEF+RQFAPYVG+ER+Q+FG TA+ + Sbjct: 267 ILQPRLEASFYGKRDPALEIGSGLSSGTLGLRLRYEFSRQFAPYVGVERSQAFGGTANLI 326 Query: 316 RGAGGNAGETRLVAGVRVLF 335 AGG GETR+VAGVR F Sbjct: 327 EAAGGRRGETRVVAGVRFWF 346 >ref|ZP_07677915.1| copper resistance protein B [Ralstonia sp. 5_7_47FAA] gb|EFP63758.1| copper resistance protein B [Ralstonia sp. 5_7_47FAA] Length = 355 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 196/355 (55%), Positives = 246/355 (69%), Gaps = 22/355 (6%) Query: 3 LTRYSTQILVLTLASASMSAALAQAHEGH---AAPAASSASQPA-MTTMDSMD--SMDGS 56 + +++ L + L SAALAQ AP++S+ +QP ++M MD SM G Sbjct: 1 MQKHAKAALTIALTVVGTSAALAQESTTSYDTMAPSSSAGTQPKDHSSMQGMDHGSMQGM 60 Query: 57 TASPAMPMDHGAM------NHAGMNHG---GMDMG---GMDMGS----SSTAPADARDPH 100 MDHG+M + GM+HG GMD G GMD GS + P DARDP+ Sbjct: 61 DHGSMQGMDHGSMQGMDHGSMQGMDHGSMQGMDHGSMQGMDHGSMQMQGGSPPPDARDPN 120 Query: 101 GYSNGYTLNTGPYAQKDTSALMMSDMHSFGSFLVDRLERVHTRSGNSVAYDTQGWVGNSY 160 YS GY L G YA +T LMM+D H+FGSFL+DRLE V + N+ +Y+ Q W G++Y Sbjct: 121 AYSGGYQLGVGKYALGNTRQLMMADEHNFGSFLIDRLEWVRGTNSNAASYEAQAWYGSTY 180 Query: 161 DKFYLKAEGDIEQGRVGDARTELLWSHAITPYWDTQLGLRVDVGSNRPGRNWLAFGVQGL 220 +K LKAEGD+++GR+ +ARTELLW HAIT +WDTQLG+R DVGS RP RNW AFGVQGL Sbjct: 181 NKVVLKAEGDVKKGRLEEARTELLWGHAITTFWDTQLGIRNDVGSGRPARNWAAFGVQGL 240 Query: 221 APYWFEVEATGYVGEQGRTALRLAAEYEVLLTQRWVLQPRVEANLYGKEDPELGIGRGLS 280 APYWF ++AT YVG GRTALRL+ EYE+LLTQR +LQPRVEANLYGK DP L IG GLS Sbjct: 241 APYWFNIQATAYVGNSGRTALRLSTEYELLLTQRLILQPRVEANLYGKNDPVLEIGSGLS 300 Query: 281 SAAYGVRLRYEFTRQFAPYVGIERNQSFGRTASFVRGAGGNAGETRLVAGVRVLF 335 SA+ G+RLRYEF+RQFAPY+G+ER Q+FG TA+ +R GG +GETR VAG+RV + Sbjct: 301 SASVGLRLRYEFSRQFAPYIGVERYQTFGNTANMIRADGGRSGETRFVAGLRVWY 355